| Clone Name | rbags15d14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468187.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2143 Score = 450 bits (227), Expect = e-123 Identities = 389/443 (87%) Strand = Plus / Minus Query: 277 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 336 |||||||||||||||| || ||||||||||| |||||||||||||| | ||| |||||| Sbjct: 1791 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 1732 Query: 337 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 396 || ||||||||||| | |||||| ||||| | |||||| |||||| || |||||||| Sbjct: 1731 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 1672 Query: 397 acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 456 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1671 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 1612 Query: 457 aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 516 ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 1611 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 1552 Query: 517 ataaccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagtt 576 ||||||||||||||||| || || || ||||||||||| | ||| |||||||||| |||| Sbjct: 1551 ataaccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagtt 1492 Query: 577 atttgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatat 636 ||||| || | || || || || ||||| ||||||||||| |||||||||||||||||| Sbjct: 1491 atttgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatat 1432 Query: 637 attgctgtgcaaattacgaagcatataaagagtgccttagggaatttcgtgcgatcagac 696 ||||||||||||||| | ||||||||||| |||||||||| |||||||||||| || ||| Sbjct: 1431 attgctgtgcaaattgcaaagcatataaacagtgccttagtgaatttcgtgcggtctgac 1372 Query: 697 attgattggtagatattcggaaa 719 ||||||||||| ||||| ||||| Sbjct: 1371 attgattggtaaatatttggaaa 1349
>ref|XM_468186.1| Oryza sativa (japonica cultivar-group), mRNA Length = 864 Score = 450 bits (227), Expect = e-123 Identities = 389/443 (87%) Strand = Plus / Minus Query: 277 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 336 |||||||||||||||| || ||||||||||| |||||||||||||| | ||| |||||| Sbjct: 743 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 684 Query: 337 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 396 || ||||||||||| | |||||| ||||| | |||||| |||||| || |||||||| Sbjct: 683 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 624 Query: 397 acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 456 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 623 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 564 Query: 457 aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 516 ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 563 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 504 Query: 517 ataaccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagtt 576 ||||||||||||||||| || || || ||||||||||| | ||| |||||||||| |||| Sbjct: 503 ataaccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagtt 444 Query: 577 atttgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatat 636 ||||| || | || || || || ||||| ||||||||||| |||||||||||||||||| Sbjct: 443 atttgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatat 384 Query: 637 attgctgtgcaaattacgaagcatataaagagtgccttagggaatttcgtgcgatcagac 696 ||||||||||||||| | ||||||||||| |||||||||| |||||||||||| || ||| Sbjct: 383 attgctgtgcaaattgcaaagcatataaacagtgccttagtgaatttcgtgcggtctgac 324 Query: 697 attgattggtagatattcggaaa 719 ||||||||||| ||||| ||||| Sbjct: 323 attgattggtaaatatttggaaa 301
>dbj|AK066747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088E05, full insert sequence Length = 2143 Score = 442 bits (223), Expect = e-121 Identities = 388/443 (87%) Strand = Plus / Minus Query: 277 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 336 |||||||||||||||| || ||||||||||| |||||||||||||| | ||| |||||| Sbjct: 1791 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 1732 Query: 337 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 396 || ||||||||||| | |||||| ||||| | |||||| |||||| || ||||| || Sbjct: 1731 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgacgca 1672 Query: 397 acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 456 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1671 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 1612 Query: 457 aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 516 ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 1611 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 1552 Query: 517 ataaccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagtt 576 ||||||||||||||||| || || || ||||||||||| | ||| |||||||||| |||| Sbjct: 1551 ataaccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagtt 1492 Query: 577 atttgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatat 636 ||||| || | || || || || ||||| ||||||||||| |||||||||||||||||| Sbjct: 1491 atttgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatat 1432 Query: 637 attgctgtgcaaattacgaagcatataaagagtgccttagggaatttcgtgcgatcagac 696 ||||||||||||||| | ||||||||||| |||||||||| |||||||||||| || ||| Sbjct: 1431 attgctgtgcaaattgcaaagcatataaacagtgccttagtgaatttcgtgcggtctgac 1372 Query: 697 attgattggtagatattcggaaa 719 ||||||||||| ||||| ||||| Sbjct: 1371 attgattggtaaatatttggaaa 1349
>dbj|AK060825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B05, full insert sequence Length = 1219 Score = 436 bits (220), Expect = e-119 Identities = 388/443 (87%), Gaps = 2/443 (0%) Strand = Plus / Minus Query: 277 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 336 |||||||||||||||| || ||||||||||| |||||||||||||| | ||| |||||| Sbjct: 722 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 663 Query: 337 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 396 || ||||||||||| | |||||| ||||| | |||||| |||||| || |||||||| Sbjct: 662 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 603 Query: 397 acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 456 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 602 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 543 Query: 457 aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 516 ||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||| Sbjct: 542 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 483 Query: 517 ataaccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagtt 576 ||||||||||||||||| || || || ||||||||||| | ||| ||||||||| |||| Sbjct: 482 ataaccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattc--agtt 425 Query: 577 atttgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatat 636 ||||| || | || || || || ||||| ||||||||||| |||||||||||||||||| Sbjct: 424 atttgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatat 365 Query: 637 attgctgtgcaaattacgaagcatataaagagtgccttagggaatttcgtgcgatcagac 696 ||||||||||||||| | ||||||||||| |||||||||| |||||||||||| || ||| Sbjct: 364 attgctgtgcaaattgcaaagcatataaacagtgccttagtgaatttcgtgcggtctgac 305 Query: 697 attgattggtagatattcggaaa 719 ||||||||||| ||||| ||||| Sbjct: 304 attgattggtaaatatttggaaa 282
>gb|AY106678.1| Zea mays PCO130308 mRNA sequence Length = 920 Score = 375 bits (189), Expect = e-100 Identities = 402/473 (84%) Strand = Plus / Minus Query: 262 gctttattctgtgcgatcttcaagaagcacaaggcgggcattatgacagccacaagtata 321 ||||| ||||| |||||||||| ||| ||||||| ||||||||||| |||||||||||| Sbjct: 604 gctttgttctgcgcgatcttcaggaaacacaagggtggcattatgactgccacaagtata 545 Query: 322 ctgagcagggatccaatcagagccatcaccaaaccgaagaatggaagaagaaatgcaatg 381 || || || |||||||| |||| |||||| | ||| ||||| || |||||||| |||||| Sbjct: 544 ctaagaagagatccaatgagagacatcacaagaccaaagaacggcagaagaaaggcaatg 485 Query: 382 acaacagttgatgccacaaggctcgtcctcagtataatagagacaattgtttcgttcaaa 441 ||||||||||| | |||| |||||||||||||||| | ||||||||||| | Sbjct: 484 catacagttgatgcaagaagggcagtcctcagtataatagcgcatgatgtttcgttcata 425 Query: 442 aatccttcagggcgcaactcttctaaactccgagccaatgggtttaacaacaaggcaaat 501 || |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 424 aaaccttcaggacgcaactcttctaaactccgagctaatgggtttaacaacaaggcaaat 365 Query: 502 ttggtgaaagggttgataaccgtggtccacagagcaacttttgaggcaaatgactctttt 561 ||||||||||||||||| ||||||||||| || ||||||| ||||||||| || | ||| Sbjct: 364 ttggtgaaagggttgatcaccgtggtccatagtgcaacttctgaggcaaacgaatgcttt 305 Query: 562 ggaagattcaaagttatttgggacattgtcttgtcaccaaacatcagatagccaataata 621 ||||| || ||||| ||||| || | || || | |||||||| ||| ||||||| | | Sbjct: 304 ggaaggtttaaagtgatttgtgataaagtgttctttccaaacatgagaaagccaatgaca 245 Query: 622 gcaaacgagccatatattgctgtgcaaattacgaagcatataaagagtgccttagggaat 681 ||||| |||||||||||||||||||||||| |||| ||||| || |||||||||||||| Sbjct: 244 gcaaaagagccatatattgctgtgcaaattgcgaaacatatgaacagtgccttagggaac 185 Query: 682 ttcgtgcgatcagacattgattggtagatattcggaaataccgaatgcccgga 734 || | ||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct: 184 ttagatcgatcggacattgactggtagatatttggaaataccgaatgcccgga 132
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 153 bits (77), Expect = 1e-33 Identities = 128/145 (88%) Strand = Plus / Plus Query: 354 accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 413 |||||| ||||| | |||||| |||||| || |||||||| |||||| |||||||| Sbjct: 33531971 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 33532030 Query: 414 tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 473 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 33532031 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 33532090 Query: 474 agccaatgggtttaacaacaaggca 498 |||||||||||||||||||| |||| Sbjct: 33532091 agccaatgggtttaacaacagggca 33532115 Score = 119 bits (60), Expect = 1e-23 Identities = 114/132 (86%) Strand = Plus / Plus Query: 520 accgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttatt 579 |||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||||| Sbjct: 33532363 accgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttatt 33532422 Query: 580 tgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatatatt 639 || || | || || || || ||||| ||||||||||| ||||||||||||||||||||| Sbjct: 33532423 tgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatatatt 33532482 Query: 640 gctgtgcaaatt 651 |||||||||||| Sbjct: 33532483 gctgtgcaaatt 33532494 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 658 catataaagagtgccttagggaatttcgtgcgatcagacattgattggtagatattcgga 717 |||||||| |||||||||| |||||||||||| || |||||||||||||| ||||| ||| Sbjct: 33532585 catataaacagtgccttagtgaatttcgtgcggtctgacattgattggtaaatatttgga 33532644 Query: 718 aa 719 || Sbjct: 33532645 aa 33532646 Score = 48.1 bits (24), Expect = 0.041 Identities = 36/40 (90%) Strand = Plus / Plus Query: 311 ccacaagtatactgagcagggatccaatcagagccatcac 350 ||||||||||||| | ||| |||||||| ||||||||||| Sbjct: 33531192 ccacaagtatactcaacagagatccaataagagccatcac 33531231 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 ttggtgaaagggttgataacc 522 ||||||||||||||||||||| Sbjct: 33532262 ttggtgaaagggttgataacc 33532282
>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0054K20 Length = 153584 Score = 153 bits (77), Expect = 1e-33 Identities = 128/145 (88%) Strand = Plus / Plus Query: 354 accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 413 |||||| ||||| | |||||| |||||| || |||||||| |||||| |||||||| Sbjct: 106846 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 106905 Query: 414 tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 473 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 106906 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 106965 Query: 474 agccaatgggtttaacaacaaggca 498 |||||||||||||||||||| |||| Sbjct: 106966 agccaatgggtttaacaacagggca 106990 Score = 119 bits (60), Expect = 1e-23 Identities = 114/132 (86%) Strand = Plus / Plus Query: 520 accgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttatt 579 |||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||||| Sbjct: 107238 accgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttatt 107297 Query: 580 tgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatatatt 639 || || | || || || || ||||| ||||||||||| ||||||||||||||||||||| Sbjct: 107298 tgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatatatt 107357 Query: 640 gctgtgcaaatt 651 |||||||||||| Sbjct: 107358 gctgtgcaaatt 107369 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 658 catataaagagtgccttagggaatttcgtgcgatcagacattgattggtagatattcgga 717 |||||||| |||||||||| |||||||||||| || |||||||||||||| ||||| ||| Sbjct: 107460 catataaacagtgccttagtgaatttcgtgcggtctgacattgattggtaaatatttgga 107519 Query: 718 aa 719 || Sbjct: 107520 aa 107521 Score = 48.1 bits (24), Expect = 0.041 Identities = 36/40 (90%) Strand = Plus / Plus Query: 311 ccacaagtatactgagcagggatccaatcagagccatcac 350 ||||||||||||| | ||| |||||||| ||||||||||| Sbjct: 106067 ccacaagtatactcaacagagatccaataagagccatcac 106106 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 ttggtgaaagggttgataacc 522 ||||||||||||||||||||| Sbjct: 107137 ttggtgaaagggttgataacc 107157
>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1046_F07 Length = 114184 Score = 153 bits (77), Expect = 1e-33 Identities = 128/145 (88%) Strand = Plus / Plus Query: 354 accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 413 |||||| ||||| | |||||| |||||| || |||||||| |||||| |||||||| Sbjct: 2642 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 2701 Query: 414 tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 473 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 2702 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 2761 Query: 474 agccaatgggtttaacaacaaggca 498 |||||||||||||||||||| |||| Sbjct: 2762 agccaatgggtttaacaacagggca 2786 Score = 119 bits (60), Expect = 1e-23 Identities = 114/132 (86%) Strand = Plus / Plus Query: 520 accgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttatt 579 |||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||||| Sbjct: 3034 accgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttatt 3093 Query: 580 tgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatatatt 639 || || | || || || || ||||| ||||||||||| ||||||||||||||||||||| Sbjct: 3094 tgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatatatt 3153 Query: 640 gctgtgcaaatt 651 |||||||||||| Sbjct: 3154 gctgtgcaaatt 3165 Score = 75.8 bits (38), Expect = 2e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 658 catataaagagtgccttagggaatttcgtgcgatcagacattgattggtagatattcgga 717 |||||||| |||||||||| |||||||||||| || |||||||||||||| ||||| ||| Sbjct: 3256 catataaacagtgccttagtgaatttcgtgcggtctgacattgattggtaaatatttgga 3315 Query: 718 aa 719 || Sbjct: 3316 aa 3317 Score = 48.1 bits (24), Expect = 0.041 Identities = 36/40 (90%) Strand = Plus / Plus Query: 311 ccacaagtatactgagcagggatccaatcagagccatcac 350 ||||||||||||| | ||| |||||||| ||||||||||| Sbjct: 1863 ccacaagtatactcaacagagatccaataagagccatcac 1902 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 502 ttggtgaaagggttgataacc 522 ||||||||||||||||||||| Sbjct: 2933 ttggtgaaagggttgataacc 2953
>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence Length = 213888 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 689 gatcagacattgattggtagatattcggaaataccgaatgccc 731 ||||||||||||| |||||||| || |||||||| |||||||| Sbjct: 92233 gatcagacattgactggtagatgtttggaaatactgaatgccc 92275
>ref|NM_129684.2| Arabidopsis thaliana amino acid permease AT2G41190 mRNA, complete cds Length = 2155 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 285 gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 344 |||||| || || |||||||| | ||||| ||||||||||| || ||||| || ||||| Sbjct: 1741 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1682 Query: 345 catca 349 ||||| Sbjct: 1681 catca 1677
>gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, complete sequence Length = 244565 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 414 tataatagagacaattgtttc 434 ||||||||||||||||||||| Sbjct: 122536 tataatagagacaattgtttc 122556
>gb|AF487277.1| Lecanicillium muscarium, complete genome Length = 24499 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 20118 caatcagagccatcaccaaac 20098
>ref|XM_816496.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506925.450) partial mRNA Length = 2046 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 257 gtgtggctttattctgtgcgatctt 281 |||||| |||||||||||||||||| Sbjct: 155 gtgtggttttattctgtgcgatctt 179
>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence Length = 264425 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 414 tataatagagacaattgtttc 434 ||||||||||||||||||||| Sbjct: 230346 tataatagagacaattgtttc 230326
>gb|BT000792.1| Arabidopsis thaliana clone RAFL05-20-J01 (R10342) unknown protein (At2g41190) mRNA, partial cds Length = 1329 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 285 gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 344 |||||| || || |||||||| | ||||| ||||||||||| || ||||| || ||||| Sbjct: 1094 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1035 Query: 345 catca 349 ||||| Sbjct: 1034 catca 1030
>gb|AY079364.1| Arabidopsis thaliana unknown protein (At2g41190) mRNA, complete cds Length = 1642 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 285 gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 344 |||||| || || |||||||| | ||||| ||||||||||| || ||||| || ||||| Sbjct: 1479 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1420 Query: 345 catca 349 ||||| Sbjct: 1419 catca 1415
>gb|AY039978.1| Arabidopsis thaliana unknown protein (At2g41190) mRNA, complete cds Length = 2030 Score = 42.1 bits (21), Expect = 2.5 Identities = 54/65 (83%) Strand = Plus / Minus Query: 285 gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 344 |||||| || || |||||||| | ||||| ||||||||||| || ||||| || ||||| Sbjct: 1741 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1682 Query: 345 catca 349 ||||| Sbjct: 1681 catca 1677
>emb|X55026.1|MTPACG Podospora anserina complete mitochondrial genome Length = 100314 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 15747 caatcagagccatcaccaaac 15727
>gb|AY945289.1| Fusarium oxysporum strain F11 mitochondrion, complete genome Length = 34477 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 28217 caatcagagccatcaccaaac 28197
>emb|X13337.1|MINCND2D Neurospora crassa mitochondrial DNA with duplications of tRNA-Met, tRNA-Cys and ND2 fragments (NADH dehydrogenase complex subunit) Length = 3884 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 3390 caatcagagccatcaccaaac 3370
>gb|AF447590.1| Hypocrea jecorina mitochondrion, complete genome Length = 42130 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 4820 caatcagagccatcaccaaac 4800
>gb|DQ026693.1| Sciurothamnion stegengae 16S ribosomal RNA gene, partial sequence; plastid Length = 1414 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 661 ataaagagtgccttagggaat 681 ||||||||||||||||||||| Sbjct: 920 ataaagagtgccttagggaat 940
>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence Length = 136822 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 484 tttaacaacaaggcaaatttg 504 ||||||||||||||||||||| Sbjct: 73990 tttaacaacaaggcaaatttg 74010
>gb|AY548158.1| Neurospora intermedia isolate M1991-60 tRNA-Met gene, partial sequence; UrfLM gene, complete cds; tRNA-Cys gene, complete sequence; disrupted small subunit ribosomal RNA gene, partial sequence; and integrated plasmid pMADDUR1 reverse transcriptase gene, partial cds; mitochondrial Length = 6030 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 3375 caatcagagccatcaccaaac 3355
>emb|Z34001.1|NCMT19SRR N.crassa (74-OR23-1A (FGSC #2489)) mitochondrial gene for 19S ribosomal RNA and transfer RNA-Tyr Length = 2071 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 76 caatcagagccatcaccaaac 56
>gb|AY874423.1| Fusarium oxysporum voucher VPRI 19292 mitochondrion, partial genome Length = 33396 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 21885 caatcagagccatcaccaaac 21865
>gb|AF029891.1|AF029891 Cryphonectria parasitica small subunit ribosomal RNA gene, complete sequence; including introns with putative maturase (mtSrRNA I1), (mtSrRNA I2), (mtSrRNA I3), and (mtSrRNA I4) genes, complete cds, mitochondrial genes for mitochondrial products Length = 11565 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 1551 caatcagagccatcaccaaac 1531
>emb|X14734.1|MIPASMRR Podospora anserina mtDNA for small subunit rRNA Length = 3981 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 612 caatcagagccatcaccaaac 592
>emb|Z69896.1|MTPCSSURR P.curvicolla mitochondrial small subunit rRNA gene (partial) Length = 249 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 172 caatcagagccatcaccaaac 152
>gb|L33367.1|NEU19RRTR Neurospora crassa (clone p19StyrB1) mitochondrial 19S ribosomal RNA gene and transfer RNA-Tyr gene, complete Length = 2071 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 76 caatcagagccatcaccaaac 56
>gb|J05254.1|NEUMTRG N.crassa mitochondrial small (19S) rRNA and Cys-tRNA Length = 2146 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 caatcagagccatcaccaaac 355 ||||||||||||||||||||| Sbjct: 1343 caatcagagccatcaccaaac 1323 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,628,562 Number of Sequences: 3902068 Number of extensions: 5628562 Number of successful extensions: 102817 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102712 Number of HSP's gapped (non-prelim): 97 length of query: 734 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 711 effective length of database: 17,143,297,704 effective search space: 12188884667544 effective search space used: 12188884667544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)