ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15d14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_468187.1| Oryza sativa (japonica cultivar-group), mRNA 450 e-123
2ref|XM_468186.1| Oryza sativa (japonica cultivar-group), mRNA 450 e-123
3dbj|AK066747.1| Oryza sativa (japonica cultivar-group) cDNA clon... 442 e-121
4dbj|AK060825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 436 e-119
5gb|AY106678.1| Zea mays PCO130308 mRNA sequence 375 e-100
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-33
7dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-33
8dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic D... 153 1e-33
9gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence 54 7e-04
10ref|NM_129684.2| Arabidopsis thaliana amino acid permease AT2G41... 42 2.5
11gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, comp... 42 2.5
12gb|AF487277.1| Lecanicillium muscarium, complete genome 42 2.5
13ref|XM_816496.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.5
14gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, com... 42 2.5
15gb|BT000792.1| Arabidopsis thaliana clone RAFL05-20-J01 (R10342)... 42 2.5
16gb|AY079364.1| Arabidopsis thaliana unknown protein (At2g41190) ... 42 2.5
17gb|AY039978.1| Arabidopsis thaliana unknown protein (At2g41190) ... 42 2.5
18emb|X55026.1|MTPACG Podospora anserina complete mitochondrial ge... 42 2.5
19gb|AY945289.1| Fusarium oxysporum strain F11 mitochondrion, comp... 42 2.5
20emb|X13337.1|MINCND2D Neurospora crassa mitochondrial DNA with d... 42 2.5
21gb|AF447590.1| Hypocrea jecorina mitochondrion, complete genome 42 2.5
22gb|DQ026693.1| Sciurothamnion stegengae 16S ribosomal RNA gene, ... 42 2.5
23gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete ... 42 2.5
24gb|AY548158.1| Neurospora intermedia isolate M1991-60 tRNA-Met g... 42 2.5
25emb|Z34001.1|NCMT19SRR N.crassa (74-OR23-1A (FGSC #2489)) mitoch... 42 2.5
26gb|AY874423.1| Fusarium oxysporum voucher VPRI 19292 mitochondri... 42 2.5
27gb|AF029891.1|AF029891 Cryphonectria parasitica small subunit ri... 42 2.5
28emb|X14734.1|MIPASMRR Podospora anserina mtDNA for small subunit... 42 2.5
29emb|Z69896.1|MTPCSSURR P.curvicolla mitochondrial small subunit ... 42 2.5
30gb|L33367.1|NEU19RRTR Neurospora crassa (clone p19StyrB1) mitoch... 42 2.5
31gb|J05254.1|NEUMTRG N.crassa mitochondrial small (19S) rRNA and ... 42 2.5

>ref|XM_468187.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2143

 Score =  450 bits (227), Expect = e-123
 Identities = 389/443 (87%)
 Strand = Plus / Minus

                                                                        
Query: 277  atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 336
            ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 1791 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 1732

                                                                        
Query: 337  atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 396
            || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 1731 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 1672

                                                                        
Query: 397  acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 456
            ||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 1671 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 1612

                                                                        
Query: 457  aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 516
            ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 1611 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 1552

                                                                        
Query: 517  ataaccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagtt 576
            ||||||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||
Sbjct: 1551 ataaccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagtt 1492

                                                                        
Query: 577  atttgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatat 636
            ||||| || |  || || || || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 1491 atttgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatat 1432

                                                                        
Query: 637  attgctgtgcaaattacgaagcatataaagagtgccttagggaatttcgtgcgatcagac 696
            ||||||||||||||| | ||||||||||| |||||||||| |||||||||||| || |||
Sbjct: 1431 attgctgtgcaaattgcaaagcatataaacagtgccttagtgaatttcgtgcggtctgac 1372

                                   
Query: 697  attgattggtagatattcggaaa 719
            ||||||||||| ||||| |||||
Sbjct: 1371 attgattggtaaatatttggaaa 1349



to top

>ref|XM_468186.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 864

 Score =  450 bits (227), Expect = e-123
 Identities = 389/443 (87%)
 Strand = Plus / Minus

                                                                       
Query: 277 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 336
           ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 743 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 684

                                                                       
Query: 337 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 396
           || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 683 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 624

                                                                       
Query: 397 acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 456
           ||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 623 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 564

                                                                       
Query: 457 aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 516
           ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 563 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 504

                                                                       
Query: 517 ataaccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagtt 576
           ||||||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||
Sbjct: 503 ataaccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagtt 444

                                                                       
Query: 577 atttgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatat 636
           ||||| || |  || || || || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 443 atttgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatat 384

                                                                       
Query: 637 attgctgtgcaaattacgaagcatataaagagtgccttagggaatttcgtgcgatcagac 696
           ||||||||||||||| | ||||||||||| |||||||||| |||||||||||| || |||
Sbjct: 383 attgctgtgcaaattgcaaagcatataaacagtgccttagtgaatttcgtgcggtctgac 324

                                  
Query: 697 attgattggtagatattcggaaa 719
           ||||||||||| ||||| |||||
Sbjct: 323 attgattggtaaatatttggaaa 301



to top

>dbj|AK066747.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088E05, full
            insert sequence
          Length = 2143

 Score =  442 bits (223), Expect = e-121
 Identities = 388/443 (87%)
 Strand = Plus / Minus

                                                                        
Query: 277  atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 336
            ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 1791 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 1732

                                                                        
Query: 337  atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 396
            || ||||||||||| | |||||| ||||| | |||||| ||||||   || ||||| || 
Sbjct: 1731 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgacgca 1672

                                                                        
Query: 397  acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 456
            ||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 1671 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 1612

                                                                        
Query: 457  aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 516
            ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 1611 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 1552

                                                                        
Query: 517  ataaccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagtt 576
            ||||||||||||||||| || || || ||||||||||| | ||| |||||||||| ||||
Sbjct: 1551 ataaccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagtt 1492

                                                                        
Query: 577  atttgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatat 636
            ||||| || |  || || || || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 1491 atttgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatat 1432

                                                                        
Query: 637  attgctgtgcaaattacgaagcatataaagagtgccttagggaatttcgtgcgatcagac 696
            ||||||||||||||| | ||||||||||| |||||||||| |||||||||||| || |||
Sbjct: 1431 attgctgtgcaaattgcaaagcatataaacagtgccttagtgaatttcgtgcggtctgac 1372

                                   
Query: 697  attgattggtagatattcggaaa 719
            ||||||||||| ||||| |||||
Sbjct: 1371 attgattggtaaatatttggaaa 1349



to top

>dbj|AK060825.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-B05, full
           insert sequence
          Length = 1219

 Score =  436 bits (220), Expect = e-119
 Identities = 388/443 (87%), Gaps = 2/443 (0%)
 Strand = Plus / Minus

                                                                       
Query: 277 atcttcaagaagcacaaggcgggcattatgacagccacaagtatactgagcagggatcca 336
           ||||||||||||||||  || ||||||||||| |||||||||||||| | ||| ||||||
Sbjct: 722 atcttcaagaagcacagtgcaggcattatgacggccacaagtatactcaacagagatcca 663

                                                                       
Query: 337 atcagagccatcaccaaaccgaagaatggaagaagaaatgcaatgacaacagttgatgcc 396
           || ||||||||||| | |||||| ||||| | |||||| ||||||   || |||||||| 
Sbjct: 662 ataagagccatcacgagaccgaaaaatggcataagaaacgcaatgcacacggttgatgca 603

                                                                       
Query: 397 acaaggctcgtcctcagtataatagagacaattgtttcgttcaaaaatccttcagggcgc 456
           ||||||   ||||||||||||||||||   ||||||||||||||||||||||||||||||
Sbjct: 602 acaagggcagtcctcagtataatagagcagattgtttcgttcaaaaatccttcagggcgc 543

                                                                       
Query: 457 aactcttctaaactccgagccaatgggtttaacaacaaggcaaatttggtgaaagggttg 516
           ||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 542 aactcctctaaactccgagccaatgggtttaacaacagggcatatttggtgaaagggttg 483

                                                                       
Query: 517 ataaccgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagtt 576
           ||||||||||||||||| || || || ||||||||||| | ||| |||||||||  ||||
Sbjct: 482 ataaccgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattc--agtt 425

                                                                       
Query: 577 atttgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatat 636
           ||||| || |  || || || || ||||| ||||||||||| ||||||||||||||||||
Sbjct: 424 atttgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatat 365

                                                                       
Query: 637 attgctgtgcaaattacgaagcatataaagagtgccttagggaatttcgtgcgatcagac 696
           ||||||||||||||| | ||||||||||| |||||||||| |||||||||||| || |||
Sbjct: 364 attgctgtgcaaattgcaaagcatataaacagtgccttagtgaatttcgtgcggtctgac 305

                                  
Query: 697 attgattggtagatattcggaaa 719
           ||||||||||| ||||| |||||
Sbjct: 304 attgattggtaaatatttggaaa 282



to top

>gb|AY106678.1| Zea mays PCO130308 mRNA sequence
          Length = 920

 Score =  375 bits (189), Expect = e-100
 Identities = 402/473 (84%)
 Strand = Plus / Minus

                                                                       
Query: 262 gctttattctgtgcgatcttcaagaagcacaaggcgggcattatgacagccacaagtata 321
           ||||| ||||| |||||||||| ||| |||||||  ||||||||||| ||||||||||||
Sbjct: 604 gctttgttctgcgcgatcttcaggaaacacaagggtggcattatgactgccacaagtata 545

                                                                       
Query: 322 ctgagcagggatccaatcagagccatcaccaaaccgaagaatggaagaagaaatgcaatg 381
           || || || |||||||| |||| |||||| | ||| ||||| || |||||||| ||||||
Sbjct: 544 ctaagaagagatccaatgagagacatcacaagaccaaagaacggcagaagaaaggcaatg 485

                                                                       
Query: 382 acaacagttgatgccacaaggctcgtcctcagtataatagagacaattgtttcgttcaaa 441
              ||||||||||| | ||||   |||||||||||||||| |     ||||||||||| |
Sbjct: 484 catacagttgatgcaagaagggcagtcctcagtataatagcgcatgatgtttcgttcata 425

                                                                       
Query: 442 aatccttcagggcgcaactcttctaaactccgagccaatgggtttaacaacaaggcaaat 501
           || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 424 aaaccttcaggacgcaactcttctaaactccgagctaatgggtttaacaacaaggcaaat 365

                                                                       
Query: 502 ttggtgaaagggttgataaccgtggtccacagagcaacttttgaggcaaatgactctttt 561
           ||||||||||||||||| ||||||||||| || ||||||| ||||||||| || |  |||
Sbjct: 364 ttggtgaaagggttgatcaccgtggtccatagtgcaacttctgaggcaaacgaatgcttt 305

                                                                       
Query: 562 ggaagattcaaagttatttgggacattgtcttgtcaccaaacatcagatagccaataata 621
           ||||| || ||||| ||||| || |  || || |  |||||||| ||| ||||||| | |
Sbjct: 304 ggaaggtttaaagtgatttgtgataaagtgttctttccaaacatgagaaagccaatgaca 245

                                                                       
Query: 622 gcaaacgagccatatattgctgtgcaaattacgaagcatataaagagtgccttagggaat 681
           ||||| |||||||||||||||||||||||| |||| ||||| || |||||||||||||| 
Sbjct: 244 gcaaaagagccatatattgctgtgcaaattgcgaaacatatgaacagtgccttagggaac 185

                                                                
Query: 682 ttcgtgcgatcagacattgattggtagatattcggaaataccgaatgcccgga 734
           || |  ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 184 ttagatcgatcggacattgactggtagatatttggaaataccgaatgcccgga 132



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  153 bits (77), Expect = 1e-33
 Identities = 128/145 (88%)
 Strand = Plus / Plus

                                                                            
Query: 354      accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 413
                |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 33531971 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 33532030

                                                                            
Query: 414      tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 473
                ||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 33532031 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 33532090

                                         
Query: 474      agccaatgggtttaacaacaaggca 498
                |||||||||||||||||||| ||||
Sbjct: 33532091 agccaatgggtttaacaacagggca 33532115



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/132 (86%)
 Strand = Plus / Plus

                                                                            
Query: 520      accgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttatt 579
                |||||||||||||| || || || ||||||||||| | ||| |||||||||| |||||||
Sbjct: 33532363 accgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttatt 33532422

                                                                            
Query: 580      tgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatatatt 639
                || || |  || || || || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 33532423 tgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatatatt 33532482

                            
Query: 640      gctgtgcaaatt 651
                ||||||||||||
Sbjct: 33532483 gctgtgcaaatt 33532494



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                            
Query: 658      catataaagagtgccttagggaatttcgtgcgatcagacattgattggtagatattcgga 717
                |||||||| |||||||||| |||||||||||| || |||||||||||||| ||||| |||
Sbjct: 33532585 catataaacagtgccttagtgaatttcgtgcggtctgacattgattggtaaatatttgga 33532644

                  
Query: 718      aa 719
                ||
Sbjct: 33532645 aa 33532646



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 311      ccacaagtatactgagcagggatccaatcagagccatcac 350
                ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 33531192 ccacaagtatactcaacagagatccaataagagccatcac 33531231



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 502      ttggtgaaagggttgataacc 522
                |||||||||||||||||||||
Sbjct: 33532262 ttggtgaaagggttgataacc 33532282



to top

>dbj|AP005535.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0054K20
          Length = 153584

 Score =  153 bits (77), Expect = 1e-33
 Identities = 128/145 (88%)
 Strand = Plus / Plus

                                                                          
Query: 354    accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 413
              |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 106846 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 106905

                                                                          
Query: 414    tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 473
              ||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 106906 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 106965

                                       
Query: 474    agccaatgggtttaacaacaaggca 498
              |||||||||||||||||||| ||||
Sbjct: 106966 agccaatgggtttaacaacagggca 106990



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/132 (86%)
 Strand = Plus / Plus

                                                                          
Query: 520    accgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttatt 579
              |||||||||||||| || || || ||||||||||| | ||| |||||||||| |||||||
Sbjct: 107238 accgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttatt 107297

                                                                          
Query: 580    tgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatatatt 639
              || || |  || || || || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 107298 tgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatatatt 107357

                          
Query: 640    gctgtgcaaatt 651
              ||||||||||||
Sbjct: 107358 gctgtgcaaatt 107369



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                          
Query: 658    catataaagagtgccttagggaatttcgtgcgatcagacattgattggtagatattcgga 717
              |||||||| |||||||||| |||||||||||| || |||||||||||||| ||||| |||
Sbjct: 107460 catataaacagtgccttagtgaatttcgtgcggtctgacattgattggtaaatatttgga 107519

                
Query: 718    aa 719
              ||
Sbjct: 107520 aa 107521



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                      
Query: 311    ccacaagtatactgagcagggatccaatcagagccatcac 350
              ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 106067 ccacaagtatactcaacagagatccaataagagccatcac 106106



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 502    ttggtgaaagggttgataacc 522
              |||||||||||||||||||||
Sbjct: 107137 ttggtgaaagggttgataacc 107157



to top

>dbj|AP003984.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1046_F07
          Length = 114184

 Score =  153 bits (77), Expect = 1e-33
 Identities = 128/145 (88%)
 Strand = Plus / Plus

                                                                        
Query: 354  accgaagaatggaagaagaaatgcaatgacaacagttgatgccacaaggctcgtcctcag 413
            |||||| ||||| | |||||| ||||||   || |||||||| ||||||   ||||||||
Sbjct: 2642 accgaaaaatggcataagaaacgcaatgcacacggttgatgcaacaagggcagtcctcag 2701

                                                                        
Query: 414  tataatagagacaattgtttcgttcaaaaatccttcagggcgcaactcttctaaactccg 473
            ||||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2702 tataatagagcagattgtttcgttcaaaaatccttcagggcgcaactcctctaaactccg 2761

                                     
Query: 474  agccaatgggtttaacaacaaggca 498
            |||||||||||||||||||| ||||
Sbjct: 2762 agccaatgggtttaacaacagggca 2786



 Score =  119 bits (60), Expect = 1e-23
 Identities = 114/132 (86%)
 Strand = Plus / Plus

                                                                        
Query: 520  accgtggtccacagagcaacttttgaggcaaatgactcttttggaagattcaaagttatt 579
            |||||||||||||| || || || ||||||||||| | ||| |||||||||| |||||||
Sbjct: 3034 accgtggtccacagtgcgaccttggaggcaaatgaatgtttaggaagattcagagttatt 3093

                                                                        
Query: 580  tgggacattgtcttgtcaccaaacatcagatagccaataatagcaaacgagccatatatt 639
            || || |  || || || || ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 3094 tgcgagagagttttatctccgaacatgagatagccaatgatagcaaacgagccatatatt 3153

                        
Query: 640  gctgtgcaaatt 651
            ||||||||||||
Sbjct: 3154 gctgtgcaaatt 3165



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                        
Query: 658  catataaagagtgccttagggaatttcgtgcgatcagacattgattggtagatattcgga 717
            |||||||| |||||||||| |||||||||||| || |||||||||||||| ||||| |||
Sbjct: 3256 catataaacagtgccttagtgaatttcgtgcggtctgacattgattggtaaatatttgga 3315

              
Query: 718  aa 719
            ||
Sbjct: 3316 aa 3317



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                    
Query: 311  ccacaagtatactgagcagggatccaatcagagccatcac 350
            ||||||||||||| | ||| |||||||| |||||||||||
Sbjct: 1863 ccacaagtatactcaacagagatccaataagagccatcac 1902



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 502  ttggtgaaagggttgataacc 522
            |||||||||||||||||||||
Sbjct: 2933 ttggtgaaagggttgataacc 2953



to top

>gb|AY371488.1| Zea mays clone BAC 276N12-123C01, partial sequence
          Length = 213888

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 689   gatcagacattgattggtagatattcggaaataccgaatgccc 731
             ||||||||||||| |||||||| || |||||||| ||||||||
Sbjct: 92233 gatcagacattgactggtagatgtttggaaatactgaatgccc 92275



to top

>ref|NM_129684.2| Arabidopsis thaliana amino acid permease AT2G41190 mRNA, complete cds
          Length = 2155

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 285  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 344
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1741 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1682

                 
Query: 345  catca 349
            |||||
Sbjct: 1681 catca 1677



to top

>gb|AC120348.9| Mus musculus chromosome 5, clone RP23-55P22, complete sequence
          Length = 244565

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 414    tataatagagacaattgtttc 434
              |||||||||||||||||||||
Sbjct: 122536 tataatagagacaattgtttc 122556



to top

>gb|AF487277.1| Lecanicillium muscarium, complete genome
          Length = 24499

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 335   caatcagagccatcaccaaac 355
             |||||||||||||||||||||
Sbjct: 20118 caatcagagccatcaccaaac 20098



to top

>ref|XM_816496.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506925.450) partial mRNA
          Length = 2046

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 257 gtgtggctttattctgtgcgatctt 281
           |||||| ||||||||||||||||||
Sbjct: 155 gtgtggttttattctgtgcgatctt 179



to top

>gb|AC019028.13| Mus musculus chromosome 5, clone RP23-88A22, complete sequence
          Length = 264425

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 414    tataatagagacaattgtttc 434
              |||||||||||||||||||||
Sbjct: 230346 tataatagagacaattgtttc 230326



to top

>gb|BT000792.1| Arabidopsis thaliana clone RAFL05-20-J01 (R10342) unknown protein
            (At2g41190) mRNA, partial cds
          Length = 1329

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 285  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 344
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1094 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1035

                 
Query: 345  catca 349
            |||||
Sbjct: 1034 catca 1030



to top

>gb|AY079364.1| Arabidopsis thaliana unknown protein (At2g41190) mRNA, complete cds
          Length = 1642

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 285  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 344
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1479 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1420

                 
Query: 345  catca 349
            |||||
Sbjct: 1419 catca 1415



to top

>gb|AY039978.1| Arabidopsis thaliana unknown protein (At2g41190) mRNA, complete cds
          Length = 2030

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 285  gaagcacaaggcgggcattatgacagccacaagtatactgagcagggatccaatcagagc 344
            |||||| || || |||||||| |  ||||| ||||||||||| || ||||| || |||||
Sbjct: 1741 gaagcataaagctggcattattattgccactagtatactgagaagagatcctataagagc 1682

                 
Query: 345  catca 349
            |||||
Sbjct: 1681 catca 1677



to top

>emb|X55026.1|MTPACG Podospora anserina complete mitochondrial genome
          Length = 100314

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 335   caatcagagccatcaccaaac 355
             |||||||||||||||||||||
Sbjct: 15747 caatcagagccatcaccaaac 15727



to top

>gb|AY945289.1| Fusarium oxysporum strain F11 mitochondrion, complete genome
          Length = 34477

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 335   caatcagagccatcaccaaac 355
             |||||||||||||||||||||
Sbjct: 28217 caatcagagccatcaccaaac 28197



to top

>emb|X13337.1|MINCND2D Neurospora crassa mitochondrial DNA with duplications of tRNA-Met,
            tRNA-Cys and ND2 fragments (NADH dehydrogenase complex
            subunit)
          Length = 3884

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  caatcagagccatcaccaaac 355
            |||||||||||||||||||||
Sbjct: 3390 caatcagagccatcaccaaac 3370



to top

>gb|AF447590.1| Hypocrea jecorina mitochondrion, complete genome
          Length = 42130

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  caatcagagccatcaccaaac 355
            |||||||||||||||||||||
Sbjct: 4820 caatcagagccatcaccaaac 4800



to top

>gb|DQ026693.1| Sciurothamnion stegengae 16S ribosomal RNA gene, partial sequence;
           plastid
          Length = 1414

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 661 ataaagagtgccttagggaat 681
           |||||||||||||||||||||
Sbjct: 920 ataaagagtgccttagggaat 940



to top

>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence
          Length = 136822

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 484   tttaacaacaaggcaaatttg 504
             |||||||||||||||||||||
Sbjct: 73990 tttaacaacaaggcaaatttg 74010



to top

>gb|AY548158.1| Neurospora intermedia isolate M1991-60 tRNA-Met gene, partial
            sequence; UrfLM gene, complete cds; tRNA-Cys gene,
            complete sequence; disrupted small subunit ribosomal RNA
            gene, partial sequence; and integrated plasmid pMADDUR1
            reverse transcriptase gene, partial cds; mitochondrial
          Length = 6030

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  caatcagagccatcaccaaac 355
            |||||||||||||||||||||
Sbjct: 3375 caatcagagccatcaccaaac 3355



to top

>emb|Z34001.1|NCMT19SRR N.crassa (74-OR23-1A (FGSC #2489)) mitochondrial gene for 19S
           ribosomal RNA and transfer RNA-Tyr
          Length = 2071

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 335 caatcagagccatcaccaaac 355
           |||||||||||||||||||||
Sbjct: 76  caatcagagccatcaccaaac 56



to top

>gb|AY874423.1| Fusarium oxysporum voucher VPRI 19292 mitochondrion, partial genome
          Length = 33396

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 335   caatcagagccatcaccaaac 355
             |||||||||||||||||||||
Sbjct: 21885 caatcagagccatcaccaaac 21865



to top

>gb|AF029891.1|AF029891 Cryphonectria parasitica small subunit ribosomal RNA gene, complete
            sequence; including introns with putative maturase
            (mtSrRNA I1), (mtSrRNA I2), (mtSrRNA I3), and (mtSrRNA
            I4) genes, complete cds, mitochondrial genes for
            mitochondrial products
          Length = 11565

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  caatcagagccatcaccaaac 355
            |||||||||||||||||||||
Sbjct: 1551 caatcagagccatcaccaaac 1531



to top

>emb|X14734.1|MIPASMRR Podospora anserina mtDNA for small subunit rRNA
          Length = 3981

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 335 caatcagagccatcaccaaac 355
           |||||||||||||||||||||
Sbjct: 612 caatcagagccatcaccaaac 592



to top

>emb|Z69896.1|MTPCSSURR P.curvicolla mitochondrial small subunit rRNA gene (partial)
          Length = 249

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 335 caatcagagccatcaccaaac 355
           |||||||||||||||||||||
Sbjct: 172 caatcagagccatcaccaaac 152



to top

>gb|L33367.1|NEU19RRTR Neurospora crassa (clone p19StyrB1) mitochondrial 19S ribosomal RNA
           gene and transfer RNA-Tyr gene, complete
          Length = 2071

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 335 caatcagagccatcaccaaac 355
           |||||||||||||||||||||
Sbjct: 76  caatcagagccatcaccaaac 56



to top

>gb|J05254.1|NEUMTRG N.crassa mitochondrial small (19S) rRNA and Cys-tRNA
          Length = 2146

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 335  caatcagagccatcaccaaac 355
            |||||||||||||||||||||
Sbjct: 1343 caatcagagccatcaccaaac 1323


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,628,562
Number of Sequences: 3902068
Number of extensions: 5628562
Number of successful extensions: 102817
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102712
Number of HSP's gapped (non-prelim): 97
length of query: 734
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 711
effective length of database: 17,143,297,704
effective search space: 12188884667544
effective search space used: 12188884667544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top