ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14o14 |
|---|---|
| Clone Library Name | barley_pub |
>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 480 Score = 134 bits (337), Expect(2) = 4e-36 Identities = 63/88 (71%), Positives = 73/88 (82%) Frame = -2 Query: 641 APTAVSR*AWCGTRTRPPRGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA 462 +PT V + + + AH +CILTEW+EFK+LDY+KIFDNMQKPAFVFDGRN+VDA Sbjct: 393 SPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDA 452 Query: 461 EKLREIGFIVYSIGKPLDGWLKDMPAVA 378 +KLREIGFIVYSIGKPLD WLKDMPAVA Sbjct: 453 DKLREIGFIVYSIGKPLDPWLKDMPAVA 480 Score = 44.3 bits (103), Expect = 4e-04 Identities = 20/25 (80%), Positives = 22/25 (88%) Frame = -1 Query: 660 MHLQPTSPHGRKQVSVVWDAYEATK 586 +HLQPTSP K+VSVVWDAYEATK Sbjct: 387 IHLQPTSPTTVKKVSVVWDAYEATK 411 Score = 37.4 bits (85), Expect(2) = 4e-36 Identities = 14/15 (93%), Positives = 15/15 (100%) Frame = -3 Query: 706 IQRDLAMNKFDWDHP 662 IQRDL+MNKFDWDHP Sbjct: 372 IQRDLSMNKFDWDHP 386
>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless) Length = 476 Score = 75.1 bits (183), Expect = 2e-13 Identities = 31/57 (54%), Positives = 45/57 (78%) Frame = -2 Query: 587 RGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGK 417 R HA+ I TEW+EF LD+K+I+ +M KPA++FDGR ++D E+L++IGF V +IGK Sbjct: 403 RATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459
>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva protein 4) Length = 481 Score = 72.8 bits (177), Expect = 1e-12 Identities = 32/60 (53%), Positives = 45/60 (75%) Frame = -2 Query: 587 RGAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLD 408 RGAHA+ +LTEW+EF L+Y +I ++MQ PA +FDGR ++D + LREIGF ++IG D Sbjct: 411 RGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470
>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 68.2 bits (165), Expect = 2e-11 Identities = 33/58 (56%), Positives = 42/58 (72%), Gaps = 2/58 (3%) Frame = -2 Query: 584 GAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLREIGFIVYSIGK 417 GAHAV I TEW+ FK LDY++I M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 407 GAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 494 Score = 68.2 bits (165), Expect = 2e-11 Identities = 33/58 (56%), Positives = 42/58 (72%), Gaps = 2/58 (3%) Frame = -2 Query: 584 GAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLREIGFIVYSIGK 417 GAHAV I TEW+ FK LDY++I M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 407 GAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 67.0 bits (162), Expect = 5e-11 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%) Frame = -2 Query: 584 GAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLREIGFIVYSIGK 417 GAHA+ I TEW+ FK LDY++I M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 407 GAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464
>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 493 Score = 67.0 bits (162), Expect = 5e-11 Identities = 32/58 (55%), Positives = 42/58 (72%), Gaps = 2/58 (3%) Frame = -2 Query: 584 GAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDA--EKLREIGFIVYSIGK 417 GAHA+ I TEW+ FK LDY++I M KPAF+FDGR V+D +L+ IGF + +IGK Sbjct: 407 GAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464
>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 453 Score = 54.3 bits (129), Expect = 4e-07 Identities = 26/63 (41%), Positives = 40/63 (63%) Frame = -2 Query: 584 GAHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDG 405 GA A+ ++TEW +F+ D++KI +M+ P V DGRN+ ++ E+GFI IG+P G Sbjct: 388 GADALVLVTEWKQFRQPDFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIGRPRAG 446 Query: 404 WLK 396 K Sbjct: 447 HCK 449
>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 432 Score = 52.0 bits (123), Expect = 2e-06 Identities = 21/54 (38%), Positives = 39/54 (72%) Frame = -2 Query: 572 VCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPL 411 + I TEW+EFK L++++I+D ++ P + D RN++D E +++IGF Y++G + Sbjct: 380 IVIATEWSEFKELNWQEIYDLVKSP-IIIDFRNILDNETMKKIGFRYYAVGSKI 432
>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 434 Score = 50.1 bits (118), Expect = 7e-06 Identities = 21/54 (38%), Positives = 38/54 (70%) Frame = -2 Query: 572 VCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPL 411 + I TEW+EFK L++++I+ N+ K + D RN++D E +++IGF Y++G + Sbjct: 382 IVIATEWSEFKELNWQEIY-NLVKSPMIIDLRNILDNEVMKKIGFRYYAVGSQI 434
>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) Length = 437 Score = 47.8 bits (112), Expect = 3e-05 Identities = 23/56 (41%), Positives = 37/56 (66%) Frame = -2 Query: 581 AHAVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKP 414 A A+ I+TEWNEF++LD+ ++ M+ P V D RN+ +++ + GF SIG+P Sbjct: 382 ADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFRYASIGRP 436
>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja| UDPGD intein] Length = 895 Score = 46.2 bits (108), Expect = 1e-04 Identities = 21/50 (42%), Positives = 34/50 (68%) Frame = -2 Query: 566 ILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGK 417 I+T +F D++KI N+ K VFDGRN++D EK++++GF Y +G+ Sbjct: 847 IITVEYDFNKEDWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFKYYGVGR 895
>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc| dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid biosynthesis protein tuaD) Length = 461 Score = 45.1 bits (105), Expect = 2e-04 Identities = 20/54 (37%), Positives = 35/54 (64%) Frame = -2 Query: 575 AVCILTEWNEFKSLDYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKP 414 A ILT+W E K ++ K+ +++P + DGRN+ E+++ G+I +SIG+P Sbjct: 380 ACLILTDWPEVKEMELVKVKTLLKQPVII-DGRNLFSLEEMQAAGYIYHSIGRP 432
>NCOR1_MOUSE (Q60974) Nuclear receptor corepressor 1 (N-CoR1) (N-CoR) (Retinoid| X receptor-interacting protein 13) (RIP13) Length = 2453 Score = 35.0 bits (79), Expect = 0.22 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +3 Query: 327 DDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPE 455 D A+ P DV+ E +G VL+PP AD VD E +PE Sbjct: 801 DSASAETAEPMDVDHEECGAEGSSVLDPPAPTKADSVDPEMQVPE 845
>RS3_HALSA (P15009) 30S ribosomal protein S3P (HS4) (HHAS3)| Length = 302 Score = 31.2 bits (69), Expect = 3.2 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +3 Query: 318 APIDDAAGRQTRPADVESE-LGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAA 482 A D AA ++ PAD E E + + +E ++ LAD V+ E + E VDD AA Sbjct: 229 ADADAAAEPESEPADFEDEEVIETDDDVEEELDELADAVEGEDEDDEFSDVDDEAA 284
>GLND_CAUCR (Q9AC53) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 940 Score = 30.4 bits (67), Expect = 5.5 Identities = 15/52 (28%), Positives = 23/52 (44%) Frame = -3 Query: 172 LLSFRSIHVCVCRSYNQTPRPPVLSEEVFSPLYPMNFVAGGSSTVLXNCYRI 17 L F I + R Y QTP + E + L+ + F G +S + C R+ Sbjct: 117 LAPFSDIDLLFLRPYKQTPHAESVIEYMLYALWDLGFKVGHASRTIEECVRL 168
>BIGA_SALTY (P25927) Putative surface-exposed virulence protein bigA precursor| Length = 1953 Score = 30.4 bits (67), Expect = 5.5 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 2/61 (3%) Frame = +3 Query: 321 PIDDAAGRQTRPADVESEL--GDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVEDE 494 P D G T P D + DGG+V P DG DD P+ G DDVA +D Sbjct: 99 PKPDNGGDVTPPDDGGNVTPPDDGGNVTPPD-----DGGDDNVTPPDDSGDDDVAPPDDS 153 Query: 495 G 497 G Sbjct: 154 G 154
>ARX_MOUSE (O35085) Homeobox protein ARX (Aristaless-related homeobox)| Length = 564 Score = 29.6 bits (65), Expect = 9.4 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = +3 Query: 312 PAAPIDDAAGRQTRPADVESELGDGGHVLEPPVERLADGVDDEADLPELLGVDDVAAVED 491 P + A+G + PA GG E E L + +DE + ELL DD +ED Sbjct: 200 PEERLSAASGPGSAPA------AGGGTGAEDDEEELLEDEEDEEEEEELLEDDDEELLED 253 Query: 492 EGRLL 506 + R L Sbjct: 254 DARAL 258
>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1449 Score = 29.6 bits (65), Expect = 9.4 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = -2 Query: 533 DYKKIFDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLD 408 DY +I +Q F+ NV D E+LRE+ +Y +GK +D Sbjct: 702 DYLEI-QPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMD 742 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,426,158 Number of Sequences: 219361 Number of extensions: 1915060 Number of successful extensions: 6391 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6012 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6382 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7139613222 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
