ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15d13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ515477.2|TAE515477 Triticum aestivum erebp gene for ethyle... 418 e-114
2gb|AY781352.1| Triticum aestivum ethylene-responsive element bin... 416 e-113
3gb|AF542184.1| Triticum aestivum EREBP transcription factor mRNA... 394 e-107
4gb|AY781361.1| Triticum aestivum DREB transcription factor 6 (DR... 387 e-104
5gb|AY271984.1| Triticum aestivum ethylene-responsive element bin... 157 3e-35
6gb|AY271985.1| Triticum aestivum ethylene-responsive element bin... 133 4e-28
7gb|BT018826.1| Zea mays clone EL01N0551B03.d mRNA sequence 64 3e-07
8gb|AY103951.1| Zea mays PCO106933 mRNA sequence 64 3e-07
9ref|XM_468125.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.081
10ref|XM_507539.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.081
11ref|XM_507538.1| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.081
12ref|XM_507013.2| PREDICTED Oryza sativa (japonica cultivar-group... 46 0.081
13gb|AY581836.1| Cynodon dactylon putative transcription factor ER... 46 0.081
14gb|AF193803.1| Oryza sativa transcription factor EREBP1 mRNA, co... 46 0.081
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
16dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.081
17dbj|AK119885.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.081
18dbj|AK119643.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.081
19dbj|AK103783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.081
20dbj|AK069833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.081
21gb|AF190770.1|AF190770 Oryza sativa EREBP-like protein (tsh1) mR... 46 0.081
22dbj|AK064027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.081
23emb|BX957357.12| Zebrafish DNA sequence from clone DKEY-98L21 in... 46 0.081
24dbj|AK060742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.081
25gb|DP000032.1| Felis catus target 116 genomic scaffold 44 0.32
26gb|AC152958.1| Mus musculus 6 BAC RP23-301K21 (Roswell Park Canc... 42 1.3
27gb|AC102675.9| Mus musculus, clone RP23-232O16, complete sequence 42 1.3
28gb|AC117383.4| Homo sapiens 3 BAC RP11-789L4 (Roswell Park Cance... 42 1.3
29gb|AC022215.4|AC022215 Homo sapiens BAC clone RP11-764I5 from 3,... 42 1.3
30dbj|BS000092.1| Pan troglodytes chromosome 22 clone:RP43-125I01,... 42 1.3
31gb|AY019410.1| Oryza sativa microsatellite MRG1735 containing (A... 40 5.0
32gb|AC154279.2| Mus musculus BAC clone RP24-271E12 from chromosom... 40 5.0
33gb|AC134826.4| Mus musculus BAC clone RP24-459P6 from chromosome... 40 5.0
34gb|AC164441.4| Mus musculus BAC clone CH25-660D15 from chromosom... 40 5.0
35gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome ... 40 5.0
36gb|AC122325.4| Mus musculus BAC clone RP23-334H17 from chromosom... 40 5.0
37gb|AC132459.3| Mus musculus BAC clone RP23-152I2 from chromosome... 40 5.0
38gb|AC129319.4| Mus musculus BAC clone RP24-127J16 from chromosom... 40 5.0
39gb|AC129313.4| Mus musculus BAC clone RP23-342K4 from chromosome... 40 5.0
40emb|AL356319.18| Human DNA sequence from clone RP11-810G21 on ch... 40 5.0
41emb|Z54140.2|SPBC12C2 S.pombe chromosome II cosmid c12C2 40 5.0
42emb|BX294164.13| Zebrafish DNA sequence from clone CH211-266D19 ... 40 5.0
43gb|AC087321.20| Homo sapiens 12 BAC RP11-606D9 (Roswell Park Can... 40 5.0
44gb|AC090457.6| Homo sapiens chromosome 18, clone RP11-357H3, com... 40 5.0
45gb|AC154287.2| Mus musculus BAC clone RP24-484I9 from chromosome... 40 5.0
46gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosom... 40 5.0
47ref|NM_001021929.1| Schizosaccharomyces pombe 972h- hypothetical... 40 5.0
48gb|AC158403.4| Mus musculus chromosome 3, clone RP24-211L17, com... 40 5.0
49dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
50gb|AC074008.5| Homo sapiens BAC clone RP11-582H21 from 2, comple... 40 5.0
51gb|AC113303.16| Mus musculus chromosome 5, clone RP23-431E5, com... 40 5.0
52gb|AC079437.2| Rattus norvegicus strain Brown Norway chromosome ... 40 5.0
53dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
54emb|X15346.1|GCMVRNA1 Hungarian grapevine chrome mosaic nepoviru... 40 5.0
55emb|AJ223984.1|SPSTE16 Schizosaccharomyces pombe ste20 gene 40 5.0
56dbj|AP000474.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 40 5.0
57dbj|AP001689.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.0
58emb|CT030654.8| Mouse DNA sequence from clone RP23-332G16 on chr... 40 5.0
59emb|AL732410.6| Mouse DNA sequence from clone RP23-91L2 on chrom... 40 5.0
60gb|AC121834.4| Mus musculus BAC clone RP24-72F20 from chromosome... 40 5.0
61emb|AL355005.3| Mouse DNA sequence from clone RP21-429M4 on chro... 40 5.0 
>emb|AJ515477.2|TAE515477 Triticum aestivum erebp gene for ethylene response element binding
            protein
          Length = 1451

 Score =  418 bits (211), Expect = e-114
 Identities = 334/376 (88%), Gaps = 3/376 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    caataaggtngaaacaggaatacaaaataagcagttccc-attacatactaagnntcata 59
            ||||||||| |||||| |||||||||||||||||||||| || |||||||  |  |||||
Sbjct: 1360 caataaggtagaaacatgaatacaaaataagcagttccccatcacatactg-gtctcata 1302

                                                                        
Query: 60   cacatatagatatatagtcccggggtncaagacaaaagnctattgcanaagacttnagtc 119
             | | ||| |  |||||||  ||||  ||||||| | | |||||||| ||||| | ||||
Sbjct: 1301 tatagatataagtatagtctgggggcacaagacagaggtctattgcaaaagacctcagtc 1242

                                                                        
Query: 120  tcctgaccatttaagctagacataactataagactgacatcgctactgctcgattctaga 179
             ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct: 1241 acctgaccatttaagctagacataaccata-gactgacatcgctactgctcaattctaga 1183

                                                                        
Query: 180  ggcaccagacacaagcacttgttgatgtccagaatacttattccctttgtctatatatac 239
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1182 ggcaccagacacaagcacttgttgatgtcctgaatacttattccctttgtctatatatac 1123

                                                                        
Query: 240  aggcacccagcaacctnaattccctcagtagaaaccagcngacaagggcatgtcatnaaa 299
            ||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 1122 aggcacccagcgacctcgattccctcagtagaaaccagcagacaagggcatgtcatcaaa 1063

                                                                        
Query: 300  ggtncacaggtccatgttgccnaccacatcctggngcacatnacagcttanaatgctgtc 359
            ||| || ||| |||||||||| |||||||||||| | |||| |||||||| |||||||||
Sbjct: 1062 ggtccaaaggcccatgttgccgaccacatcctggggtacatcacagcttagaatgctgtc 1003

                            
Query: 360  aattgactcatctgaa 375
            ||||||||||||||||
Sbjct: 1002 aattgactcatctgaa 987
to top
>gb|AY781352.1| Triticum aestivum ethylene-responsive element binding protein 1
            (EREB1) mRNA, complete cds
          Length = 1403

 Score =  416 bits (210), Expect = e-113
 Identities = 334/375 (89%), Gaps = 4/375 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    caataaggtngaaacaggaatacaaaataagcagttcccattacatactaagnntcatac 60
            ||||||||| ||||||||||||||||||||||||||||||| |||||||  |  ||||| 
Sbjct: 1359 caataaggtagaaacaggaatacaaaataagcagttcccatcacatactg-gtttcatat 1301

                                                                        
Query: 61   acatatagatatatagtcccggggtncaagacaaaagnctattgcanaagacttnagtct 120
            | | ||| | ||||||||  ||||  ||||||| | | |||||||| |||||||  ||||
Sbjct: 1300 atagatata-atatagtctgggggcacaagacagaggtctattgcaaaagacttaggtct 1242

                                                                        
Query: 121  cctgaccatttaagctagacataactataagactgacatcgctactgctcgattctagag 180
            ||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct: 1241 cctgaccatttaagctagacataaccata-gactgacgtcgctactgctcgattctagag 1183

                                                                        
Query: 181  gcaccagacacaagcacttgttgatgtccagaatacttattccctttgtctatatataca 240
            ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1182 gcaccagacacaagcacttgttgatgtccagaatacttattcc-tttgtctatatataca 1124

                                                                        
Query: 241  ggcacccagcaacctnaattccctcagtagaaaccagcngacaagggcatgtcatnaaag 300
            |||||||||| ||||  ||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1123 ggcacccagcgacctcgattccctcagtagaaaccagcagacaagggcatgtcatcaaag 1064

                                                                        
Query: 301  gtncacaggtccatgttgccnaccacatcctggngcacatnacagcttanaatgctgtca 360
            || || ||| |||||||||| || || |||||  | |||| |||||||| ||||||||||
Sbjct: 1063 gtccaaaggcccatgttgccgacaacgtcctgcggtacatcacagcttagaatgctgtca 1004

                           
Query: 361  attgactcatctgaa 375
            |||||||||||||||
Sbjct: 1003 attgactcatctgaa 989
to top
>gb|AF542184.1| Triticum aestivum EREBP transcription factor mRNA, complete cds
          Length = 1475

 Score =  394 bits (199), Expect = e-107
 Identities = 333/376 (88%), Gaps = 5/376 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    caataaggtngaaacaggaatacaaaataagcagttccc-attacatactaagnntcata 59
            ||||||||| |||||| |||||||||||||||||||||| || |||||||  |  |||||
Sbjct: 1449 caataaggtagaaacatgaatacaaaataagcagttccccatcacatactg-gtctcata 1391

                                                                        
Query: 60   cacatatagatatatagtcccggggtncaagacaaaagnctattgcanaagacttnagtc 119
             | | ||| | ||||||||  ||||  ||||||| | | |||||||| |||||   ||||
Sbjct: 1390 tatagatata-atatagtctgggggcacaagacagaggtctattgcaaaagaccccagtc 1332

                                                                        
Query: 120  tcctgaccatttaagctagacataactataagactgacatcgctactgctcgattctaga 179
             ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct: 1331 acctgaccatttaagctagacataaccata-gactgacatcgctactgctcaattctaga 1273

                                                                        
Query: 180  ggcaccagacacaagcacttgttgatgtccagaatacttattccctttgtctatatatac 239
            |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1272 ggcaccagacacaagcacttgttgatgtcctgaatacttattcc-tttgtctatatatac 1214

                                                                        
Query: 240  aggcacccagcaacctnaattccctcagtagaaaccagcngacaagggcatgtcatnaaa 299
            ||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 1213 aggcacccagcgacctcgattccctcagtagaaaccagcagacaagggcatgtcatcaaa 1154

                                                                        
Query: 300  ggtncacaggtccatgttgccnaccacatcctggngcacatnacagcttanaatgctgtc 359
            ||| || ||| |||||||||| |||||||||||| | |||| |||||||| |||||||||
Sbjct: 1153 ggtccaaaggcccatgttgccgaccacatcctggggtacatcacagcttagaatgctgtc 1094

                            
Query: 360  aattgactcatctgaa 375
            ||||||||||||||||
Sbjct: 1093 aattgactcatctgaa 1078
to top
>gb|AY781361.1| Triticum aestivum DREB transcription factor 6 (DREB6) mRNA, complete
            cds
          Length = 1525

 Score =  387 bits (195), Expect = e-104
 Identities = 333/376 (88%), Gaps = 6/376 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    caataaggtngaaacaggaatacaaaataagcagttccc-attacatactaagnntcata 59
            ||||||||| |||||| |||||||||||||||||||||| || |||||||  |  |||||
Sbjct: 1097 caataaggtagaaacatgaatacaaaataagcagttccccatcacatactg-gtctcata 1155

                                                                        
Query: 60   cacatatagatatatagtcccggggtncaagacaaaagnctattgcanaagacttnagtc 119
             | | ||| | ||||||||  ||||  ||||||| | | |||||||| ||||| | ||||
Sbjct: 1156 tatagatata-atatagtctgggggcacaagacagaggtctattgcaaaagacctcagtc 1214

                                                                        
Query: 120  tcctgaccatttaagctagacataactataagactgacatcgctactgctcgattctaga 179
             ||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||
Sbjct: 1215 acctgaccatttaagctagacataaccata-gactgacatcgctactgctcaattctaga 1273

                                                                        
Query: 180  ggcaccagacacaagcacttgttgatgtccagaatacttattccctttgtctatatatac 239
            |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1274 ggcaccagacacaagcacttgttgatgtcctgaatacttattcc-tttgtctatatatac 1332

                                                                        
Query: 240  aggcacccagcaacctnaattccctcagtagaaaccagcngacaagggcatgtcatnaaa 299
            ||||||||||| ||||  ||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 1333 aggcacccagcgacctcgattccctcagtagaaaccagcagacaagggcatgtcatcaaa 1392

                                                                        
Query: 300  ggtncacaggtccatgttgccnaccacatcctggngcacatnacagcttanaatgctgtc 359
            ||| || ||| ||||| |||| |||||||||||| | |||| |||||||| |||||||||
Sbjct: 1393 ggtccaaaggcccatg-tgccgaccacatcctggggtacatcacagcttagaatgctgtc 1451

                            
Query: 360  aattgactcatctgaa 375
            ||||||||||||||||
Sbjct: 1452 aattgactcatctgaa 1467
to top
>gb|AY271984.1| Triticum aestivum ethylene-responsive element binding protein
           (TaERF1) mRNA, complete cds
          Length = 999

 Score =  157 bits (79), Expect = 3e-35
 Identities = 102/112 (91%)
 Strand = Plus / Minus

                                                                       
Query: 264 tcagtagaaaccagcngacaagggcatgtcatnaaaggtncacaggtccatgttgccnac 323
           ||||||||||||||| |||||||||||||||| |||||| || ||| |||||||||| ||
Sbjct: 999 tcagtagaaaccagcagacaagggcatgtcatcaaaggtccaaaggcccatgttgccgac 940

                                                               
Query: 324 cacatcctggngcacatnacagcttanaatgctgtcaattgactcatctgaa 375
           |||||||||| | |||| |||||||| |||||||||||||||||||||||||
Sbjct: 939 cacatcctggggtacatcacagcttagaatgctgtcaattgactcatctgaa 888
to top
>gb|AY271985.1| Triticum aestivum ethylene-responsive element binding protein
            (TaERF2) mRNA, complete cds
          Length = 1068

 Score =  133 bits (67), Expect = 4e-28
 Identities = 99/112 (88%)
 Strand = Plus / Minus

                                                                        
Query: 264  tcagtagaaaccagcngacaagggcatgtcatnaaaggtncacaggtccatgttgccnac 323
            ||||||||||||||| |||||||||||||||| |||||| || ||| |||||||||| ||
Sbjct: 1068 tcagtagaaaccagcagacaagggcatgtcatcaaaggtccaaaggcccatgttgccgac 1009

                                                                
Query: 324  cacatcctggngcacatnacagcttanaatgctgtcaattgactcatctgaa 375
             || |||||  | |||| |||||||| |||||||||||||||||||||||||
Sbjct: 1008 aacgtcctgcggtacatcacagcttagaatgctgtcaattgactcatctgaa 957
to top
>gb|BT018826.1| Zea mays clone EL01N0551B03.d mRNA sequence
          Length = 1835

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 262  cctcagtagaaaccagcngacaagggcatgtcatnaaaggtncacaggtccatgttgccn 321
            ||||||||||||||||| |||| ||||||||| |  ||| | || |||||||||||||  
Sbjct: 1279 cctcagtagaaaccagcagacatgggcatgtcctcgaagctccaaaggtccatgttgctg 1220

                        
Query: 322  accacatcctgg 333
            ||||| ||||||
Sbjct: 1219 accacgtcctgg 1208
to top
>gb|AY103951.1| Zea mays PCO106933 mRNA sequence
          Length = 2052

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 61/72 (84%)
 Strand = Plus / Minus

                                                                        
Query: 262  cctcagtagaaaccagcngacaagggcatgtcatnaaaggtncacaggtccatgttgccn 321
            ||||||||||||||||| |||| ||||||||| |  ||| | || |||||||||||||  
Sbjct: 1275 cctcagtagaaaccagcagacatgggcatgtcctcgaagctccaaaggtccatgttgctg 1216

                        
Query: 322  accacatcctgg 333
            ||||| ||||||
Sbjct: 1215 accacgtcctgg 1204
to top
>ref|XM_468125.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1484

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1148 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1101
to top
>ref|XM_507539.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1585

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1241 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1194
to top
>ref|XM_507538.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1687

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1243 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1196
to top
>ref|XM_507013.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1311_D08.9 mRNA
          Length = 1602

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1145 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1098
to top
>gb|AY581836.1| Cynodon dactylon putative transcription factor EREBP1 mRNA, partial
           cds
          Length = 330

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 285 gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
           ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 76  gggcatgtcatcaaagctccagaggtccatgttgctgactacatcctg 29
to top
>gb|AF193803.1| Oryza sativa transcription factor EREBP1 mRNA, complete cds
          Length = 1612

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1176 gggcatgtcatcaaagctccataggtccatgttgctgacaacatcctg 1129
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                                
Query: 285      gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
                ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 33218835 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 33218882
to top
>dbj|AP004849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1311_D08
          Length = 163702

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Plus

                                                             
Query: 285   gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
             ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 48144 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 48191
to top
>dbj|AK119885.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-H02, full
            insert sequence
          Length = 1484

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1148 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1101
to top
>dbj|AK119643.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-130-F11, full
            insert sequence
          Length = 1587

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1242 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1195
to top
>dbj|AK103783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033145H23, full
            insert sequence
          Length = 1689

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1244 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1197
to top
>dbj|AK069833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031B06, full
            insert sequence
          Length = 1677

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/46 (89%), Gaps = 2/46 (4%)
 Strand = Plus / Minus

                                                          
Query: 203  gatgtccagaatacttattccctttgtc--tatatatacaggcacc 246
            ||||||||||||  ||||||| ||||||  ||||||||||||||||
Sbjct: 1237 gatgtccagaatgtttattccatttgtccttatatatacaggcacc 1192
to top
>gb|AF190770.1|AF190770 Oryza sativa EREBP-like protein (tsh1) mRNA, complete cds
          Length = 1597

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/46 (89%), Gaps = 2/46 (4%)
 Strand = Plus / Minus

                                                          
Query: 203  gatgtccagaatacttattccctttgtc--tatatatacaggcacc 246
            ||||||||||||  ||||||| ||||||  ||||||||||||||||
Sbjct: 1250 gatgtccagaatgtttattccatttgtccttatatatacaggcacc 1205
to top
>dbj|AK064027.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-B02, full
            insert sequence
          Length = 1603

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                            
Query: 285  gggcatgtcatnaaaggtncacaggtccatgttgccnaccacatcctg 332
            ||||||||||| |||| | || |||||||||||||  || ||||||||
Sbjct: 1146 gggcatgtcatcaaagctccagaggtccatgttgctgacaacatcctg 1099
to top
>emb|BX957357.12| Zebrafish DNA sequence from clone DKEY-98L21 in linkage group 19,
             complete sequence
          Length = 226454

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 55    tcatacacatatagatatatagt 77
             |||||||||||||||||||||||
Sbjct: 48552 tcatacacatatagatatatagt 48574
to top
>dbj|AK060742.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-E01, full
            insert sequence
          Length = 1591

 Score = 46.1 bits (23), Expect = 0.081
 Identities = 41/46 (89%), Gaps = 2/46 (4%)
 Strand = Plus / Minus

                                                          
Query: 203  gatgtccagaatacttattccctttgtc--tatatatacaggcacc 246
            ||||||||||||  ||||||| ||||||  ||||||||||||||||
Sbjct: 1276 gatgtccagaatgtttattccatttgtccttatatatacaggcacc 1231
to top
>gb|DP000032.1| Felis catus target 116 genomic scaffold
          Length = 376810

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 219    attccctttgtctatatataca 240
              ||||||||||||||||||||||
Sbjct: 309547 attccctttgtctatatataca 309568
to top
>gb|AC152958.1| Mus musculus 6 BAC RP23-301K21 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 182995

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 190   acaagcacttgttgatgtcca 210
             |||||||||||||||||||||
Sbjct: 62961 acaagcacttgttgatgtcca 62941
to top
>gb|AC102675.9| Mus musculus, clone RP23-232O16, complete sequence
          Length = 208734

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 190    acaagcacttgttgatgtcca 210
              |||||||||||||||||||||
Sbjct: 199023 acaagcacttgttgatgtcca 199003
to top
>gb|AC117383.4| Homo sapiens 3 BAC RP11-789L4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 194991

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 26    aataagcagttcccattacat 46
             |||||||||||||||||||||
Sbjct: 98873 aataagcagttcccattacat 98853
to top
>gb|AC022215.4|AC022215 Homo sapiens BAC clone RP11-764I5 from 3, complete sequence
          Length = 180068

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 26    aataagcagttcccattacat 46
             |||||||||||||||||||||
Sbjct: 29842 aataagcagttcccattacat 29862
to top
>dbj|BS000092.1| Pan troglodytes chromosome 22 clone:RP43-125I01, map 22, complete
             sequences
          Length = 155948

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 2     aataaggtngaaacaggaatacaa 25
             |||||||| |||||||||||||||
Sbjct: 21323 aataaggtagaaacaggaatacaa 21346
to top
>gb|AY019410.1| Oryza sativa microsatellite MRG1735 containing (AT)X33, genomic
           sequence
          Length = 266

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 56  catacacatatagatatata 75
           ||||||||||||||||||||
Sbjct: 244 catacacatatagatatata 263
to top
>gb|AC154279.2| Mus musculus BAC clone RP24-271E12 from chromosome 17, complete sequence
          Length = 173729

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     atacacatatagatatatag 76
              ||||||||||||||||||||
Sbjct: 112738 atacacatatagatatatag 112719
to top
>gb|AC134826.4| Mus musculus BAC clone RP24-459P6 from chromosome 13, complete sequence
          Length = 168202

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    acaggaatacaaaataagca 33
             ||||||||||||||||||||
Sbjct: 88623 acaggaatacaaaataagca 88642
to top
>gb|AC164441.4| Mus musculus BAC clone CH25-660D15 from chromosome 13, complete
             sequence
          Length = 110316

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    catacacatatagatatata 75
             ||||||||||||||||||||
Sbjct: 55717 catacacatatagatatata 55736
to top
>gb|AC164086.3| Mus musculus BAC clone RP23-25E6 from chromosome 13, complete
            sequence
          Length = 214085

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   catacacatatagatatata 75
            ||||||||||||||||||||
Sbjct: 5954 catacacatatagatatata 5973
to top
>gb|AC122325.4| Mus musculus BAC clone RP23-334H17 from chromosome 5, complete
            sequence
          Length = 184869

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 56   catacacatatagatatata 75
            ||||||||||||||||||||
Sbjct: 5191 catacacatatagatatata 5210
to top
>gb|AC132459.3| Mus musculus BAC clone RP23-152I2 from chromosome 14, complete sequence
          Length = 186486

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     tacacatatagatatatagt 77
              ||||||||||||||||||||
Sbjct: 115686 tacacatatagatatatagt 115667
to top
>gb|AC129319.4| Mus musculus BAC clone RP24-127J16 from chromosome 8, complete sequence
          Length = 169835

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     catacacatatagatatata 75
              ||||||||||||||||||||
Sbjct: 132901 catacacatatagatatata 132882
to top
>gb|AC129313.4| Mus musculus BAC clone RP23-342K4 from chromosome 8, complete sequence
          Length = 215576

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    catacacatatagatatata 75
             ||||||||||||||||||||
Sbjct: 26689 catacacatatagatatata 26670
to top
>emb|AL356319.18| Human DNA sequence from clone RP11-810G21 on chromosome 13 Contains a
             CpG island, complete sequence
          Length = 137260

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    catacacatatagatatata 75
             ||||||||||||||||||||
Sbjct: 35484 catacacatatagatatata 35503
to top
>emb|Z54140.2|SPBC12C2 S.pombe chromosome II cosmid c12C2
          Length = 36149

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    aatacaaaataagcagttcc 38
             ||||||||||||||||||||
Sbjct: 34220 aatacaaaataagcagttcc 34201
to top
>emb|BX294164.13| Zebrafish DNA sequence from clone CH211-266D19 in linkage group 24,
              complete sequence
          Length = 177516

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     catacacatatagatatata 75
              ||||||||||||||||||||
Sbjct: 103451 catacacatatagatatata 103470
to top
>gb|AC087321.20| Homo sapiens 12 BAC RP11-606D9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 123010

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   agacataactataagactga 156
             ||||||||||||||||||||
Sbjct: 11483 agacataactataagactga 11464
to top
>gb|AC090457.6| Homo sapiens chromosome 18, clone RP11-357H3, complete sequence
          Length = 173765

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    catacacatatagatatata 75
             ||||||||||||||||||||
Sbjct: 92914 catacacatatagatatata 92895
to top
>gb|AC154287.2| Mus musculus BAC clone RP24-484I9 from chromosome 14, complete
            sequence
          Length = 165637

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 58   tacacatatagatatatagt 77
            ||||||||||||||||||||
Sbjct: 8359 tacacatatagatatatagt 8340
to top
>gb|AC154596.2| Mus musculus BAC clone RP23-354C17 from chromosome 17, complete
             sequence
          Length = 208266

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    atacacatatagatatatag 76
             ||||||||||||||||||||
Sbjct: 17850 atacacatatagatatatag 17831
to top
>ref|NM_001021929.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC12C2.02c),
            partial mRNA
          Length = 3930

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   aatacaaaataagcagttcc 38
            ||||||||||||||||||||
Sbjct: 3437 aatacaaaataagcagttcc 3418
to top
>gb|AC158403.4| Mus musculus chromosome 3, clone RP24-211L17, complete sequence
          Length = 156964

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 191   caagcacttgttgatgtccagaatactt 218
             |||||||||||||| ||||| |||||||
Sbjct: 50110 caagcacttgttgacgtccacaatactt 50137
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 56       catacacatatagatatata 75
                ||||||||||||||||||||
Sbjct: 20310180 catacacatatagatatata 20310161
to top
>gb|AC074008.5| Homo sapiens BAC clone RP11-582H21 from 2, complete sequence
          Length = 159439

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    catacacatatagatatata 75
             ||||||||||||||||||||
Sbjct: 38647 catacacatatagatatata 38666
to top
>gb|AC113303.16| Mus musculus chromosome 5, clone RP23-431E5, complete sequence
          Length = 221109

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     catacacatatagatatata 75
              ||||||||||||||||||||
Sbjct: 146645 catacacatatagatatata 146664
to top
>gb|AC079437.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-275K4,
             complete sequence
          Length = 109809

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    catacacatatagatatata 75
             ||||||||||||||||||||
Sbjct: 18677 catacacatatagatatata 18658
to top
>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0056L09
          Length = 152910

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    catacacatatagatatata 75
             ||||||||||||||||||||
Sbjct: 57928 catacacatatagatatata 57909
to top
>emb|X15346.1|GCMVRNA1 Hungarian grapevine chrome mosaic nepovirus RNA1 sequence
          Length = 7212

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 11  gaaacaggaatacaaaataa 30
           ||||||||||||||||||||
Sbjct: 394 gaaacaggaatacaaaataa 375
to top
>emb|AJ223984.1|SPSTE16 Schizosaccharomyces pombe ste20 gene
          Length = 4050

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   aatacaaaataagcagttcc 38
            ||||||||||||||||||||
Sbjct: 3521 aatacaaaataagcagttcc 3502
to top
>dbj|AP000474.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-40E19, complete
             sequence
          Length = 94460

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 3     ataaggtngaaacaggaatacaa 25
             ||||||| |||||||||||||||
Sbjct: 76769 ataaggtagaaacaggaatacaa 76791
to top
>dbj|AP001689.1| Homo sapiens genomic DNA, chromosome 21q, section 33/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 3     ataaggtngaaacaggaatacaa 25
             ||||||| |||||||||||||||
Sbjct: 41409 ataaggtagaaacaggaatacaa 41431
to top
>emb|CT030654.8| Mouse DNA sequence from clone RP23-332G16 on chromosome 17, complete
              sequence
          Length = 194694

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     atacacatatagatatatag 76
              ||||||||||||||||||||
Sbjct: 174000 atacacatatagatatatag 173981
to top
>emb|AL732410.6| Mouse DNA sequence from clone RP23-91L2 on chromosome X, complete
              sequence
          Length = 220894

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     atacacatatagatatatag 76
              ||||||||||||||||||||
Sbjct: 175363 atacacatatagatatatag 175344
to top
>gb|AC121834.4| Mus musculus BAC clone RP24-72F20 from chromosome 5, complete sequence
          Length = 226382

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 56     catacacatatagatatata 75
              ||||||||||||||||||||
Sbjct: 132582 catacacatatagatatata 132601
to top
>emb|AL355005.3| Mouse DNA sequence from clone RP21-429M4 on chromosome X, complete
              sequence
          Length = 140069

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     atacacatatagatatatag 76
              ||||||||||||||||||||
Sbjct: 117266 atacacatatagatatatag 117285


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,283,526
Number of Sequences: 3902068
Number of extensions: 2283526
Number of successful extensions: 53320
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 53183
Number of HSP's gapped (non-prelim): 132
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top