ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15c19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477797.1| Oryza sativa (japonica cultivar-group), mRNA 313 4e-82
2dbj|AK111603.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 4e-82
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
4dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
5ref|NM_129596.3| Arabidopsis thaliana nucleotide binding AT2G403... 68 4e-08
6gb|AC007020.5| Arabidopsis thaliana chromosome 2 clone T3G21 map... 68 4e-08
7gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, comp... 46 0.14
8gb|AC025627.13| Homo sapiens chromosome 17, clone RP11-1113L8, c... 46 0.14
9emb|AL365315.8| Human DNA sequence from clone RP11-275K8 on chro... 42 2.2
10emb|X95815.1|PJRNAIVC P.jarrei mRNA for type IV collagen 42 2.2
11gb|AC182808.1| Gasterosteus aculeatus clone VMRC28-105K03, compl... 42 2.2
12gb|AC092799.2| Homo sapiens chromosome 1 clone RP11-5F19, comple... 42 2.2
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
14emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
15ref|XM_520868.1| PREDICTED: Pan troglodytes similar to poly (ADP... 40 8.6
16ref|XM_516695.1| PREDICTED: Pan troglodytes similar to poly (ADP... 40 8.6
17gb|AY582736.1| Cucumis melo clone BAC 31O16, complete sequence 40 8.6
18gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosom... 40 8.6
19gb|AY362551.1| Maize chlorotic dwarf virus strain Severe, comple... 40 8.6
20gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 40 8.6
21gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 40 8.6
22gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, com... 40 8.6
23gb|AC116694.9| Mus musculus chromosome 7, clone RP24-386G12, com... 40 8.6
24gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 8.6
25gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome ... 40 8.6
26gb|AC128666.4| Mus musculus BAC clone RP24-153M4 from chromosome... 40 8.6
27ref|XM_814698.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.6
28emb|AL358434.16| Human DNA sequence from clone RP11-471P6 on chr... 40 8.6
29emb|AL355520.8| Human DNA sequence from clone RP4-595C2 on chrom... 40 8.6
30emb|AL139132.16| Human DNA sequence from clone RP11-177A2 on chr... 40 8.6
31gb|AC092908.9| Homo sapiens 3q BAC RP11-757I12 (Roswell Park Can... 40 8.6
32gb|AC010857.8| Homo sapiens chromosome 8, clone RP11-301G7, comp... 40 8.6
33gb|AF165142.2| Homo sapiens chromosome 8 clone CTA-392C11 map ce... 40 8.6
34gb|AC087721.4| Homo sapiens chromosome 15 clone RP11-16O9 map 15... 40 8.6
35gb|AC105999.4| Homo sapiens chromosome 8, clone CTA-392C11, comp... 40 8.6
36gb|AC098595.2| Homo sapiens BAC clone RP11-495L18 from 4, comple... 40 8.6
37gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 8.6
38gb|AC175464.1| Mus musculus BAC clone RP23-129E4 from chromosome... 40 8.6
39emb|BX005204.7| Zebrafish DNA sequence from clone CH211-151G17, ... 40 8.6
40emb|AL592202.21| Zebrafish DNA sequence from clone XX-DZ105N24 C... 40 8.6
41emb|BX001058.4| Zebrafish DNA sequence from clone CH211-14I21, c... 40 8.6 
>ref|XM_477797.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1947

 Score =  313 bits (158), Expect = 4e-82
 Identities = 293/338 (86%)
 Strand = Plus / Minus

                                                                        
Query: 283  gtgaacaaccacggttgtctcgggtggaatttgcaatccaaaactcctcttctatctgaa 342
            ||||||||||| || ||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1907 gtgaacaaccaaggctgtcttgggtggaatttgcaatccagaactcctcttccatctgaa 1848

                                                                        
Query: 343  ctcaaatggccacgaagaatctccaatggtacaataagtgggttctggttgagatcagca 402
            ||  |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| | |
Sbjct: 1847 cttgaatgaccacgaagaatttccaatggtacaataagtgggttttggttaagatctgaa 1788

                                                                        
Query: 403  taaaccatcccatggaacacatgagctgtacaatcctccgatgacgaggcaaaaagaggg 462
            || ||||| |||||||| ||||  || ||||||||||| || || |||||||||||||| 
Sbjct: 1787 tagaccattccatggaatacataggccgtacaatcctctgaggatgaggcaaaaagagga 1728

                                                                        
Query: 463  tatctccggtggaaagtaacactggttatatccttcttgtggttctttaacatcttgtat 522
            ||| ||||||| ||||||||| | || |||||||||  ||||||||||||  ||||||||
Sbjct: 1727 tatttccggtgaaaagtaacattagtgatatccttcgagtggttctttaatgtcttgtat 1668

                                                                        
Query: 523  ggtcttgtagatagatcagtgtcaaaccaacataatttgccatctttacttcccacaata 582
            ||||  || ||||||||||| || |||||||| ||||| |||||||| || ||||| |||
Sbjct: 1667 ggtcgcgtggatagatcagtatcgaaccaacacaatttaccatctttgctgcccacgata 1608

                                                  
Query: 583  acattatcaccaccaggatggatggagatagaggaaat 620
            |||||||||||||||||||| || ||||| ||||||||
Sbjct: 1607 acattatcaccaccaggatgtatcgagatggaggaaat 1570
to top
>dbj|AK111603.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096A10, full
            insert sequence
          Length = 2591

 Score =  313 bits (158), Expect = 4e-82
 Identities = 293/338 (86%)
 Strand = Plus / Minus

                                                                        
Query: 283  gtgaacaaccacggttgtctcgggtggaatttgcaatccaaaactcctcttctatctgaa 342
            ||||||||||| || ||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct: 2164 gtgaacaaccaaggctgtcttgggtggaatttgcaatccagaactcctcttccatctgaa 2105

                                                                        
Query: 343  ctcaaatggccacgaagaatctccaatggtacaataagtgggttctggttgagatcagca 402
            ||  |||| ||||||||||| ||||||||||||||||||||||| ||||| ||||| | |
Sbjct: 2104 cttgaatgaccacgaagaatttccaatggtacaataagtgggttttggttaagatctgaa 2045

                                                                        
Query: 403  taaaccatcccatggaacacatgagctgtacaatcctccgatgacgaggcaaaaagaggg 462
            || ||||| |||||||| ||||  || ||||||||||| || || |||||||||||||| 
Sbjct: 2044 tagaccattccatggaatacataggccgtacaatcctctgaggatgaggcaaaaagagga 1985

                                                                        
Query: 463  tatctccggtggaaagtaacactggttatatccttcttgtggttctttaacatcttgtat 522
            ||| ||||||| ||||||||| | || |||||||||  ||||||||||||  ||||||||
Sbjct: 1984 tatttccggtgaaaagtaacattagtgatatccttcgagtggttctttaatgtcttgtat 1925

                                                                        
Query: 523  ggtcttgtagatagatcagtgtcaaaccaacataatttgccatctttacttcccacaata 582
            ||||  || ||||||||||| || |||||||| ||||| |||||||| || ||||| |||
Sbjct: 1924 ggtcgcgtggatagatcagtatcgaaccaacacaatttaccatctttgctgcccacgata 1865

                                                  
Query: 583  acattatcaccaccaggatggatggagatagaggaaat 620
            |||||||||||||||||||| || ||||| ||||||||
Sbjct: 1864 acattatcaccaccaggatgtatcgagatggaggaaat 1827
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  151 bits (76), Expect = 3e-33
 Identities = 154/180 (85%)
 Strand = Plus / Plus

                                                                            
Query: 328      cctcttctatctgaactcaaatggccacgaagaatctccaatggtacaataagtgggttc 387
                ||||||| |||||||||  |||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 14481932 cctcttccatctgaacttgaatgaccacgaagaatttccaatggtacaataagtgggttt 14481991

                                                                            
Query: 388      tggttgagatcagcataaaccatcccatggaacacatgagctgtacaatcctccgatgac 447
                ||||| ||||| | ||| ||||| |||||||| ||||  || ||||||||||| || || 
Sbjct: 14481992 tggttaagatctgaatagaccattccatggaatacataggccgtacaatcctctgaggat 14482051

                                                                            
Query: 448      gaggcaaaaagagggtatctccggtggaaagtaacactggttatatccttcttgtggttc 507
                |||||||||||||| ||| ||||||| ||||||||| | || |||||||||  |||||||
Sbjct: 14482052 gaggcaaaaagaggatatttccggtgaaaagtaacattagtgatatccttcgagtggttc 14482111



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                            
Query: 515      tcttgtatggtcttgtagatagatcagtgtcaaaccaacataatttgccatctttacttc 574
                ||||||||||||  || ||||||||||| || |||||||| ||||| |||||||| || |
Sbjct: 14483053 tcttgtatggtcgcgtggatagatcagtatcgaaccaacacaatttaccatctttgctgc 14483112

                                   
Query: 575      ccacaataacattatcacc 593
                |||| ||||||||||||||
Sbjct: 14483113 ccacgataacattatcacc 14483131



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 283      gtgaacaaccacggttgtctcgggtggaatttgcaatccaaaactcct 330
                ||||||||||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 14481461 gtgaacaaccaaggctgtcttgggtggaatttgcaatccagaactcct 14481508
to top
>dbj|AP005200.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0673E01
          Length = 125909

 Score =  151 bits (76), Expect = 3e-33
 Identities = 154/180 (85%)
 Strand = Plus / Plus

                                                                          
Query: 328    cctcttctatctgaactcaaatggccacgaagaatctccaatggtacaataagtgggttc 387
              ||||||| |||||||||  |||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 102263 cctcttccatctgaacttgaatgaccacgaagaatttccaatggtacaataagtgggttt 102322

                                                                          
Query: 388    tggttgagatcagcataaaccatcccatggaacacatgagctgtacaatcctccgatgac 447
              ||||| ||||| | ||| ||||| |||||||| ||||  || ||||||||||| || || 
Sbjct: 102323 tggttaagatctgaatagaccattccatggaatacataggccgtacaatcctctgaggat 102382

                                                                          
Query: 448    gaggcaaaaagagggtatctccggtggaaagtaacactggttatatccttcttgtggttc 507
              |||||||||||||| ||| ||||||| ||||||||| | || |||||||||  |||||||
Sbjct: 102383 gaggcaaaaagaggatatttccggtgaaaagtaacattagtgatatccttcgagtggttc 102442



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 69/79 (87%)
 Strand = Plus / Plus

                                                                          
Query: 515    tcttgtatggtcttgtagatagatcagtgtcaaaccaacataatttgccatctttacttc 574
              ||||||||||||  || ||||||||||| || |||||||| ||||| |||||||| || |
Sbjct: 103384 tcttgtatggtcgcgtggatagatcagtatcgaaccaacacaatttaccatctttgctgc 103443

                                 
Query: 575    ccacaataacattatcacc 593
              |||| ||||||||||||||
Sbjct: 103444 ccacgataacattatcacc 103462



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                              
Query: 283    gtgaacaaccacggttgtctcgggtggaatttgcaatccaaaactcct 330
              ||||||||||| || ||||| ||||||||||||||||||| |||||||
Sbjct: 101792 gtgaacaaccaaggctgtcttgggtggaatttgcaatccagaactcct 101839
to top
>ref|NM_129596.3| Arabidopsis thaliana nucleotide binding AT2G40360 mRNA, complete cds
          Length = 2560

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 358  agaatctccaatggtacaataagtgggttctggttgagatcagcataaaccatcccatgg 417
            |||||||||||||| ||||| || || |||||||| ||||||  ||| ||||| ||||||
Sbjct: 2208 agaatctccaatggcacaatcagaggattctggttcagatcattatacaccattccatgg 2149

                                      
Query: 418  aacacatgagctgtacaatcctccga 443
            || |||| ||||||  ||||||||||
Sbjct: 2148 aaaacataagctgttgaatcctccga 2123



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 515  tcttgtatggtcttgtagatagatcagtgtcaaaccaacataatttgccatctttacttc 574
            ||||||||||| | | |||||||||  ||||||||||||| |  || || ||||| ||||
Sbjct: 2051 tcttgtatggtttcgaagatagatccatgtcaaaccaacacatcttcccttctttgcttc 1992

                                        
Query: 575  ccacaataacattatcaccaccaggatg 602
            | || || | ||||||||||||||||||
Sbjct: 1991 ctactatcagattatcaccaccaggatg 1964



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                        
Query: 268  gagtcggcgccggcggtgaacaaccacggttgtctcgggtggaatttgcaatccaaaact 327
            ||||| ||||| || ||||| | ||| ||||||||||| || || ||||| ||||| |||
Sbjct: 2292 gagtcagcgcctgcagtgaatagccatggttgtctcggatgaaacttgcagtccaagact 2233

                
Query: 328  cctc 331
            ||||
Sbjct: 2232 cctc 2229
to top
>gb|AC007020.5| Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete
             sequence
          Length = 82652

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 73/86 (84%)
 Strand = Plus / Plus

                                                                         
Query: 358   agaatctccaatggtacaataagtgggttctggttgagatcagcataaaccatcccatgg 417
             |||||||||||||| ||||| || || |||||||| ||||||  ||| ||||| ||||||
Sbjct: 43324 agaatctccaatggcacaatcagaggattctggttcagatcattatacaccattccatgg 43383

                                       
Query: 418   aacacatgagctgtacaatcctccga 443
             || |||| ||||||  ||||||||||
Sbjct: 43384 aaaacataagctgttgaatcctccga 43409



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                         
Query: 515   tcttgtatggtcttgtagatagatcagtgtcaaaccaacataatttgccatctttacttc 574
             ||||||||||| | | |||||||||  ||||||||||||| |  || || ||||| ||||
Sbjct: 43481 tcttgtatggtttcgaagatagatccatgtcaaaccaacacatcttcccttctttgcttc 43540

                                         
Query: 575   ccacaataacattatcaccaccaggatg 602
             | || || | ||||||||||||||||||
Sbjct: 43541 ctactatcagattatcaccaccaggatg 43568
to top
>gb|AC004448.4| Homo sapiens chromosome 17, clone CTB-187M2, complete sequence
          Length = 149157

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 172   aacaaaatcatcatgaaaatcta 194
             |||||||||||||||||||||||
Sbjct: 16620 aacaaaatcatcatgaaaatcta 16598
to top
>gb|AC025627.13| Homo sapiens chromosome 17, clone RP11-1113L8, complete sequence
          Length = 149866

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 172   aacaaaatcatcatgaaaatcta 194
             |||||||||||||||||||||||
Sbjct: 29443 aacaaaatcatcatgaaaatcta 29465
to top
>emb|AL365315.8| Human DNA sequence from clone RP11-275K8 on chromosome 1 Contains the
             5' end of the KCTD3 gene for potassium channel
             tetramerisation domain containing 3, complete sequence
          Length = 139118

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 573   tcccacaataacattatcaccacca 597
             ||||||||||||||||| |||||||
Sbjct: 88073 tcccacaataacattataaccacca 88049
to top
>emb|X95815.1|PJRNAIVC P.jarrei mRNA for type IV collagen
          Length = 2804

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 600  atggatggagatagaggaaat 620
            |||||||||||||||||||||
Sbjct: 1420 atggatggagatagaggaaat 1440
to top
>gb|AC182808.1| Gasterosteus aculeatus clone VMRC28-105K03, complete sequence
          Length = 124886

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 98    ctccaaacaaaactgtgatagcacg 122
             |||||||||||||||||||| ||||
Sbjct: 95351 ctccaaacaaaactgtgataacacg 95375
to top
>gb|AC092799.2| Homo sapiens chromosome 1 clone RP11-5F19, complete sequence
          Length = 162115

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 573    tcccacaataacattatcaccacca 597
              ||||||||||||||||| |||||||
Sbjct: 159218 tcccacaataacattataaccacca 159242
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 315      gcaatccaaaactcctcttct 335
                |||||||||||||||||||||
Sbjct: 18706617 gcaatccaaaactcctcttct 18706637
to top
>emb|AL662977.3|OSJN00176 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072D21,
             complete sequence
          Length = 160456

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 315   gcaatccaaaactcctcttct 335
             |||||||||||||||||||||
Sbjct: 55755 gcaatccaaaactcctcttct 55775
to top
>ref|XM_520868.1| PREDICTED: Pan troglodytes similar to poly (ADP-ribose) polymerase
           family, member 14 (LOC465423), mRNA
          Length = 5630

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 502 tggttctttaacatcttgtatggtcttg 529
           ||||||||||||||||| | ||||||||
Sbjct: 207 tggttctttaacatcttctttggtcttg 180
to top
>ref|XM_516695.1| PREDICTED: Pan troglodytes similar to poly (ADP-ribose) polymerase
           family, member 14 (LOC460634), mRNA
          Length = 6591

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 502 tggttctttaacatcttgtatggtcttg 529
           ||||||||||||||||| | ||||||||
Sbjct: 620 tggttctttaacatcttctttggtcttg 593
to top
>gb|AY582736.1| Cucumis melo clone BAC 31O16, complete sequence
          Length = 159477

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 44/52 (84%)
 Strand = Plus / Minus

                                                                
Query: 542  tgtcaaaccaacataatttgccatctttacttcccacaataacattatcacc 593
            |||||||||||||||| || || ||| | || ||||| |||||||| |||||
Sbjct: 6478 tgtcaaaccaacataactttccttctctgctccccacgataacattgtcacc 6427
to top
>gb|AC165357.4| Mus musculus BAC clone RP23-114G24 from chromosome 10, complete sequence
          Length = 216816

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 595    ccaggatggatggagatagaggaa 618
              |||||||||||||||| |||||||
Sbjct: 114140 ccaggatggatggagacagaggaa 114163
to top
>gb|AY362551.1| Maize chlorotic dwarf virus strain Severe, complete genome
          Length = 11784

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 226  ccttgaaagcatcgtcatca 245
            ||||||||||||||||||||
Sbjct: 5441 ccttgaaagcatcgtcatca 5422
to top
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      ctgatcttgccacggcgctg 43
               ||||||||||||||||||||
Sbjct: 1936155 ctgatcttgccacggcgctg 1936174
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      ctgatcttgccacggcgctg 43
               ||||||||||||||||||||
Sbjct: 4311481 ctgatcttgccacggcgctg 4311462
to top
>gb|AC163402.5| Mus musculus chromosome 7, clone RP23-290H21, complete sequence
          Length = 240582

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 578    caataacattatcaccacca 597
              ||||||||||||||||||||
Sbjct: 191446 caataacattatcaccacca 191465
to top
>gb|AC116694.9| Mus musculus chromosome 7, clone RP24-386G12, complete sequence
          Length = 195638

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    caataacattatcaccacca 597
              ||||||||||||||||||||
Sbjct: 164070 caataacattatcaccacca 164051
to top
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 24      ctgatcttgccacggcgctg 43
               ||||||||||||||||||||
Sbjct: 4192991 ctgatcttgccacggcgctg 4192972
to top
>gb|AC125486.4| Mus musculus BAC clone RP23-21G7 from chromosome 10, complete sequence
          Length = 222316

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 595   ccaggatggatggagatagaggaa 618
             |||||||||||||||| |||||||
Sbjct: 61155 ccaggatggatggagacagaggaa 61178
to top
>gb|AC128666.4| Mus musculus BAC clone RP24-153M4 from chromosome 7, complete sequence
          Length = 138751

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 578   caataacattatcaccacca 597
             ||||||||||||||||||||
Sbjct: 65849 caataacattatcaccacca 65868
to top
>ref|XM_814698.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508799.10) partial mRNA
          Length = 462

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 403 taaaccatcccatggaacacatga 426
           |||||||| |||||||||||||||
Sbjct: 317 taaaccatgccatggaacacatga 294
to top
>emb|AL358434.16| Human DNA sequence from clone RP11-471P6 on chromosome 1 Contains the 5'
              end of the XPR1 gene for xenotropic and polytropic
              retrovirus receptor, complete sequence
          Length = 178375

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    acataatttgccatctttac 571
              ||||||||||||||||||||
Sbjct: 164843 acataatttgccatctttac 164824
to top
>emb|AL355520.8| Human DNA sequence from clone RP4-595C2 on chromosome 1q24.1-25.3
              Contains the 3' end of the gene for Ral-A exchange factor
              RalGPS2 and the ANGPTL1 gene for angiopoietin-like 1,
              complete sequence
          Length = 157575

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     tccaaacaaaactgtgatag 118
              ||||||||||||||||||||
Sbjct: 157387 tccaaacaaaactgtgatag 157406
to top
>emb|AL139132.16| Human DNA sequence from clone RP11-177A2 on chromosome 1q25.1-31.3
            Contains the FAM20B gene for family with sequence
            similarity 20 (member B), theTOR3A gene for torsin family
            3 (member A), the 3' end of the ABL2 gene for v-abl
            Abelson murine leukemia viral oncogene homolog 2 (arg,
            Abelson-related gene), a novel gene and three CpG
            islands, complete sequence
          Length = 157866

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 99   tccaaacaaaactgtgatag 118
            ||||||||||||||||||||
Sbjct: 1812 tccaaacaaaactgtgatag 1831
to top
>gb|AC092908.9| Homo sapiens 3q BAC RP11-757I12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174257

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 502   tggttctttaacatcttgtatggtcttg 529
             ||||||||||||||||| | ||||||||
Sbjct: 13104 tggttctttaacatcttctttggtcttg 13131
to top
>gb|AC010857.8| Homo sapiens chromosome 8, clone RP11-301G7, complete sequence
          Length = 155064

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 569   tacttcccacaataacatta 588
             ||||||||||||||||||||
Sbjct: 10681 tacttcccacaataacatta 10700
to top
>gb|AF165142.2| Homo sapiens chromosome 8 clone CTA-392C11 map cen, complete sequence
          Length = 105496

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 569   tacttcccacaataacatta 588
             ||||||||||||||||||||
Sbjct: 82696 tacttcccacaataacatta 82715
to top
>gb|AC087721.4| Homo sapiens chromosome 15 clone RP11-16O9 map 15q15, complete sequence
          Length = 196603

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    gatcttgccacggcgctgca 45
             ||||||||||||||||||||
Sbjct: 85618 gatcttgccacggcgctgca 85599
to top
>gb|AC105999.4| Homo sapiens chromosome 8, clone CTA-392C11, complete sequence
          Length = 105495

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 569   tacttcccacaataacatta 588
             ||||||||||||||||||||
Sbjct: 22803 tacttcccacaataacatta 22784
to top
>gb|AC098595.2| Homo sapiens BAC clone RP11-495L18 from 4, complete sequence
          Length = 160151

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 552    acataatttgccatctttacttcc 575
              |||||||||||||||||| |||||
Sbjct: 116045 acataatttgccatcttttcttcc 116022
to top
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 25      tgatcttgccacggcgctgc 44
               ||||||||||||||||||||
Sbjct: 1899033 tgatcttgccacggcgctgc 1899052
to top
>gb|AC175464.1| Mus musculus BAC clone RP23-129E4 from chromosome 16, complete sequence
          Length = 224605

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     agaaataagaagatacaaca 93
              ||||||||||||||||||||
Sbjct: 102912 agaaataagaagatacaaca 102893
to top
>emb|BX005204.7| Zebrafish DNA sequence from clone CH211-151G17, complete sequence
          Length = 146297

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   aaacaaaactgtgatagcac 121
             ||||||||||||||||||||
Sbjct: 19617 aaacaaaactgtgatagcac 19598
to top
>emb|AL592202.21| Zebrafish DNA sequence from clone XX-DZ105N24 Contains a CpG island,
             complete sequence
          Length = 106627

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   aaacaaaactgtgatagcac 121
             ||||||||||||||||||||
Sbjct: 93702 aaacaaaactgtgatagcac 93721
to top
>emb|BX001058.4| Zebrafish DNA sequence from clone CH211-14I21, complete sequence
          Length = 209611

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    aacaaaatcatcatgaaaat 191
              ||||||||||||||||||||
Sbjct: 137925 aacaaaatcatcatgaaaat 137906


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,630,610
Number of Sequences: 3902068
Number of extensions: 5630610
Number of successful extensions: 99787
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99541
Number of HSP's gapped (non-prelim): 246
length of query: 631
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 608
effective length of database: 17,143,297,704
effective search space: 10423125004032
effective search space used: 10423125004032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top