ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags14n17 |
|---|---|
| Clone Library Name | barley_pub |
>GSH1_ARATH (P46309) Glutamate--cysteine ligase, chloroplast precursor (EC| 6.3.2.2) (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 522 Score = 88.2 bits (217), Expect(2) = 1e-25 Identities = 42/52 (80%), Positives = 47/52 (90%) Frame = -1 Query: 615 KVPVTGLKTPFRDGYVRDLAEDVLQLAKNGLERRGYKEVGFLREVDEVVRTG 460 KVPVTGLKTPFRDG ++ +AEDVL+LAK+GLERRGYKE GFL VDEVVRTG Sbjct: 443 KVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEAGFLNAVDEVVRTG 494 Score = 47.8 bits (112), Expect(2) = 1e-25 Identities = 21/28 (75%), Positives = 24/28 (85%) Frame = -2 Query: 458 VTPAEKLLNLYETKWQRSVDPVFEELLY 375 VTPAEKLL +Y +W +SVDPVFEELLY Sbjct: 495 VTPAEKLLEMYNGEWGQSVDPVFEELLY 522
>GSH1_BRAJU (O23736) Glutamate--cysteine ligase, chloroplast precursor (EC| 6.3.2.2) (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 514 Score = 87.0 bits (214), Expect(2) = 2e-24 Identities = 42/52 (80%), Positives = 47/52 (90%) Frame = -1 Query: 615 KVPVTGLKTPFRDGYVRDLAEDVLQLAKNGLERRGYKEVGFLREVDEVVRTG 460 KVPVTGLKTPFRDG ++ +AEDVL+LAK+GLERRGYKEVGFL V EVVRTG Sbjct: 435 KVPVTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEVGFLNAVTEVVRTG 486 Score = 44.7 bits (104), Expect(2) = 2e-24 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = -2 Query: 458 VTPAEKLLNLYETKWQRSVDPVFEELLY 375 VTPAE LL +Y +W +SVDPVF+ELLY Sbjct: 487 VTPAENLLEMYNGEWGQSVDPVFQELLY 514
>GSH1_LYCES (O22493) Glutamate--cysteine ligase, chloroplast precursor (EC| 6.3.2.2) (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 523 Score = 77.0 bits (188), Expect(2) = 6e-23 Identities = 36/52 (69%), Positives = 44/52 (84%) Frame = -1 Query: 615 KVPVTGLKTPFRDGYVRDLAEDVLQLAKNGLERRGYKEVGFLREVDEVVRTG 460 KVP +GLKTPFRDG + +A+DV++LAK GLERRG+KE GFL EV EVV+TG Sbjct: 444 KVPKSGLKTPFRDGLLMHVAQDVVKLAKEGLERRGFKETGFLNEVAEVVKTG 495 Score = 50.1 bits (118), Expect(2) = 6e-23 Identities = 22/34 (64%), Positives = 28/34 (82%) Frame = -2 Query: 476 KLLEQEVTPAEKLLNLYETKWQRSVDPVFEELLY 375 ++++ VTPAEKLL LY KW +SVDP+FEELLY Sbjct: 490 EVVKTGVTPAEKLLELYHGKWGQSVDPIFEELLY 523
>GSH1_MEDTR (Q9ZNX6) Glutamate--cysteine ligase, chloroplast precursor (EC| 6.3.2.2) (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) Length = 508 Score = 78.6 bits (192), Expect(2) = 4e-22 Identities = 38/52 (73%), Positives = 45/52 (86%) Frame = -1 Query: 615 KVPVTGLKTPFRDGYVRDLAEDVLQLAKNGLERRGYKEVGFLREVDEVVRTG 460 KV VTGLKTPFRDG ++ +AE+VL+LAK+GLERRG+KE GFL V EVVRTG Sbjct: 429 KVTVTGLKTPFRDGLLKHVAEEVLELAKDGLERRGFKESGFLNAVAEVVRTG 480 Score = 45.8 bits (107), Expect(2) = 4e-22 Identities = 20/28 (71%), Positives = 24/28 (85%) Frame = -2 Query: 458 VTPAEKLLNLYETKWQRSVDPVFEELLY 375 VTPAE+LL LY KW++SVD VF+ELLY Sbjct: 481 VTPAERLLELYHGKWEQSVDHVFDELLY 508
>BRE1_DEBHA (Q6BWW6) Ubiquitin-protein ligase BRE1 (EC 6.3.2.-)| Length = 691 Score = 33.9 bits (76), Expect = 0.39 Identities = 24/61 (39%), Positives = 35/61 (57%) Frame = -1 Query: 597 LKTPFRDGYVRDLAEDVLQLAKNGLERRGYKEVGFLREVDEVVRTGSDTC*EASESIRDE 418 LK+ F + V DL +L L K+ +RR K L+ +DE + GSD EASE+++ E Sbjct: 175 LKSQF-ESKVEDLQAQLLTLVKDN-DRRSSKT---LQRIDESLTNGSDVKEEASETVKSE 229 Query: 417 V 415 V Sbjct: 230 V 230
>TYCC_BREPA (O30409) Tyrocidine synthetase 3 (Tyrocidine synthetase III)| [Includes: ATP-dependent asparagine adenylase (AsnA) (Asparagine activase); ATP-dependent glutamine adenylase (GlnA) (Glutamine activase); ATP-dependent tyrosine adenylase (TyrA) (Ty Length = 6486 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Frame = +3 Query: 177 TGERKTASH---KQSVPSSKLFAAARPEVGFPRQVACGIEDGIF-VQGYSLKTLSTLSSV 344 +GER T S Q+ +KL + +G P A GI D F + G+SLK ++ ++ V Sbjct: 4064 SGERTTGSAFVAAQNDTEAKLQQIWQEVLGIP---AIGIHDNFFEIGGHSLKAMNVITQV 4120 Query: 345 HRSY 356 H+++ Sbjct: 4121 HKTF 4124
>CCNB3_CANFA (Q659K0) G2/mitotic-specific cyclin-B3| Length = 1330 Score = 30.8 bits (68), Expect = 3.3 Identities = 13/29 (44%), Positives = 14/29 (48%) Frame = +1 Query: 289 TGFLYRDTV*RPCPPCPASTEVICDSVYQ 375 T FL PCPPC ICD +YQ Sbjct: 1152 TAFLIAAKFEEPCPPCVDDFLYICDDIYQ 1180
>RSSA_CAEEL (P46769) Probable 40S ribosomal protein SA (p40)| Length = 275 Score = 30.4 bits (67), Expect = 4.3 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = +1 Query: 82 QGKVKKGSVQTGVCSGSLEMREKS*VVKDPPQLEKEKQQATNRVFRAQNYSQPRD 246 +GK+ + QTG E+ +DP + EKE+ A V AQ Y QP D Sbjct: 185 RGKISR---QTGFVLEGKEIMPDLYFYRDPTETEKEETGAHADVAEAQEYQQPTD 236
>MASZ_BACHD (Q9KB03) Malate synthase G (EC 2.3.3.9)| Length = 727 Score = 30.4 bits (67), Expect = 4.3 Identities = 19/67 (28%), Positives = 32/67 (47%) Frame = -1 Query: 507 KEVGFLREVDEVVRTGSDTC*EASESIRDEVAAQRGPRLRGVVILIH*ITYNFGGRWTRW 328 +E+G+L + E V +E++ DE+AAQ GP+L V+ ++ Y RW Sbjct: 85 EEIGYLEPIPEHVTI-------TTENVDDEIAAQAGPQL---VVPVNNARYAINAANARW 134 Query: 327 TGSSDCI 307 D + Sbjct: 135 GSLYDAL 141
>TKT1_KLULA (Q12630) Transketolase (EC 2.2.1.1) (TK)| Length = 679 Score = 30.0 bits (66), Expect = 5.6 Identities = 18/54 (33%), Positives = 30/54 (55%) Frame = -1 Query: 246 VSRLRIILSSEHSVCGLLFFFLQLWGIFHNLRFFSHFQGAGTNPCLYRPLFHLP 85 ++R R +LS+ H+ C LL+ L L+G ++ HF+ G+ + P F LP Sbjct: 58 INRDRFVLSNGHA-CALLYSLLHLFGYDMSIEDLKHFRHLGSKTPGH-PEFELP 109
>NUDH_ZYMMO (Q9RH11) Probable (di)nucleoside polyphosphate hydrolase (EC| 3.6.1.-) Length = 155 Score = 30.0 bits (66), Expect = 5.6 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -1 Query: 564 DLAEDVLQLAKNGLERRGYKEVGFLREVDE 475 D+ E+ Q+ + GLE + EVG LRE++E Sbjct: 28 DMKEEAWQMPQGGLEAKETPEVGVLRELEE 57
>IKAR_MOUSE (Q03267) DNA-binding protein Ikaros (Lymphoid transcription factor| LyF-1) Length = 517 Score = 30.0 bits (66), Expect = 5.6 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -1 Query: 324 GSSDCIPVQKSRPQFHKPPDEG 259 GSS+ +PV S Q HKPP +G Sbjct: 332 GSSEVVPVISSMYQLHKPPSDG 353
>ORCT3_MOUSE (Q6A4L0) Organic cation transporter-like 3 (Solute carrier family| 22 member 13) Length = 551 Score = 29.6 bits (65), Expect = 7.3 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 115 LFVPTPFSPSPDERLVFGINPSLSCDDGTSFPENNSE 5 +F P P S S ++ L N + +CD G +PEN + Sbjct: 85 MFRPPPDSASLEDILSHRFNETQACDSGWDYPENRPQ 121
>PCNT_MOUSE (P48725) Pericentrin| Length = 1920 Score = 29.3 bits (64), Expect = 9.6 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Frame = +1 Query: 40 HTTEMDLFRIQAVHQGKVKK--GSVQTGVCSGSLEMREKS*VVKDPPQLEKEKQQATNRV 213 H E+ L ++A HQ +KK +Q+ C ++ +K + +LE E QA+ Sbjct: 272 HEAEVSLKNLEAQHQAAIKKLQEDLQSEHCQYLQDLEQKFREKEKAKELELETLQASYED 331 Query: 214 FRAQNYSQPR 243 +AQ+ + R Sbjct: 332 LKAQSQEEIR 341
>SYFB_PSEPK (Q88K22) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 793 Score = 29.3 bits (64), Expect = 9.6 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = -3 Query: 451 LLRSF*IYTRRSGSAAWTPSSRSCYIDTLNHI*LRWTLDKVDRVFRLYPCTKIPSSIPQA 272 LL + + T +SG WT S S D + +D ++ + RLY +P PQA Sbjct: 429 LLNALELTTTKSGEGQWTVSVPSHRFD------ISLEVDLIEELARLYGYNNLPVRYPQA 482 Query: 271 --T*RGKP 254 +GKP Sbjct: 483 RLAPQGKP 490 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,709,064 Number of Sequences: 219361 Number of extensions: 2147523 Number of successful extensions: 6508 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 6250 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6505 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
