ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15c16 |
|---|---|
| Clone Library Name | barley_pub |
>RTN3_HUMAN (O95197) Reticulon-3 (Neuroendocrine-specific protein-like 2)| (NSP-like protein II) (NSPLII) Length = 236 Score = 61.2 bits (147), Expect = 2e-09 Identities = 34/107 (31%), Positives = 63/107 (58%) Frame = -1 Query: 545 NVSRALRNDVNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIH 366 N A +NR+L L + + DL L + +W+++ VG+ + +TL+ +A L+I Sbjct: 133 NYMNAAMVHINRALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLIF 192 Query: 365 TVPILYDKYQDKVDHFAGKAHTEACKHYEVLDQKVLSKIPRGPAKTK 225 +VPI+Y+KY+ ++DH+ G A + + + +K+ +K+P G AK K Sbjct: 193 SVPIVYEKYKTQIDHYVGIARDQT----KSIVEKIQAKLP-GIAKKK 234
>RTN3_MOUSE (Q9ES97) Reticulon-3| Length = 237 Score = 60.1 bits (144), Expect = 5e-09 Identities = 33/107 (30%), Positives = 63/107 (58%) Frame = -1 Query: 545 NVSRALRNDVNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIH 366 N A VN++L L + + DL L + +W+++ VG+ + +TL+ +A L++ Sbjct: 134 NYMNAAMVHVNKALKLIIRLFLVEDLVDSLKLAVFMWLMTYVGAVFNGITLLILAELLVF 193 Query: 365 TVPILYDKYQDKVDHFAGKAHTEACKHYEVLDQKVLSKIPRGPAKTK 225 +VPI+Y+KY+ ++DH+ G A + + + +K+ +K+P G AK K Sbjct: 194 SVPIVYEKYKTQIDHYVGIARDQT----KSIVEKIQAKLP-GIAKKK 235
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 57.8 bits (138), Expect = 3e-08 Identities = 32/109 (29%), Positives = 61/109 (55%) Frame = -1 Query: 572 VEIPEDLAVNVSRALRNDVNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTL 393 V I E+L S + VN ++ R + + DL L +WV + VG+ + LTL Sbjct: 1081 VAISEELVQKYSNSALGHVNCTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTL 1140 Query: 392 IYIAVLMIHTVPILYDKYQDKVDHFAGKAHTEACKHYEVLDQKVLSKIP 246 + +A++ + +VP++Y+++Q ++DH+ G A+ K+ + K+ +KIP Sbjct: 1141 LILALISLFSVPVIYERHQAQIDHYLGLAN----KNVKDAMAKIQAKIP 1185
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 57.4 bits (137), Expect = 3e-08 Identities = 31/109 (28%), Positives = 60/109 (55%) Frame = -1 Query: 572 VEIPEDLAVNVSRALRNDVNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTL 393 V I E+L S + VN ++ R + + DL L +WV + VG+ + LTL Sbjct: 1051 VAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTL 1110 Query: 392 IYIAVLMIHTVPILYDKYQDKVDHFAGKAHTEACKHYEVLDQKVLSKIP 246 + +A++ + ++P++Y+++Q ++DH+ G A+ K + K+ +KIP Sbjct: 1111 LILALISLFSIPVIYERHQAQIDHYLGLAN----KSVKDAMAKIQAKIP 1155
>RTN4_RAT (Q9JK11) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Glut4 vesicle 20 kDa protein) Length = 1163 Score = 57.0 bits (136), Expect = 4e-08 Identities = 31/109 (28%), Positives = 60/109 (55%) Frame = -1 Query: 572 VEIPEDLAVNVSRALRNDVNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTL 393 V I E+L S + VN ++ R + + DL L +WV + VG+ + LTL Sbjct: 1052 VAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLKFAVLMWVFTYVGALFNGLTL 1111 Query: 392 IYIAVLMIHTVPILYDKYQDKVDHFAGKAHTEACKHYEVLDQKVLSKIP 246 + +A++ + ++P++Y+++Q ++DH+ G A+ K + K+ +KIP Sbjct: 1112 LILALISLFSIPVIYERHQVQIDHYLGLAN----KSVKDAMAKIQAKIP 1156
>RTN1_MOUSE (Q8K0T0) Reticulon-1 (Neuroendocrine-specific protein)| Length = 780 Score = 53.1 bits (126), Expect = 6e-07 Identities = 30/91 (32%), Positives = 51/91 (56%) Frame = -1 Query: 518 VNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIHTVPILYDKY 339 VN +L R + + DL L +W+L+ VG+ + LTL+ +AV+ + T+P++Y K+ Sbjct: 687 VNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKH 746 Query: 338 QDKVDHFAGKAHTEACKHYEVLDQKVLSKIP 246 Q +VD + G T H + K+ +KIP Sbjct: 747 QAQVDQYLGLVRT----HINTVVAKIQAKIP 773
>RTN1_RAT (Q64548) Reticulon-1 (Neuroendocrine-specific protein) (S-rex)| Length = 777 Score = 53.1 bits (126), Expect = 6e-07 Identities = 30/91 (32%), Positives = 51/91 (56%) Frame = -1 Query: 518 VNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIHTVPILYDKY 339 VN +L R + + DL L +W+L+ VG+ + LTL+ +AV+ + T+P++Y K+ Sbjct: 684 VNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKH 743 Query: 338 QDKVDHFAGKAHTEACKHYEVLDQKVLSKIP 246 Q +VD + G T H + K+ +KIP Sbjct: 744 QAQVDQYLGLVRT----HINTVVAKIQAKIP 770
>RTN1_PANTR (Q5IS59) Reticulon-1| Length = 776 Score = 52.8 bits (125), Expect = 8e-07 Identities = 29/91 (31%), Positives = 51/91 (56%) Frame = -1 Query: 518 VNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIHTVPILYDKY 339 VN +L R + + DL L +W+L+ VG+ + LTL+ +AV+ + T+P++Y K+ Sbjct: 683 VNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKH 742 Query: 338 QDKVDHFAGKAHTEACKHYEVLDQKVLSKIP 246 Q ++D + G T H + K+ +KIP Sbjct: 743 QAQIDQYLGLVRT----HINAVVAKIQAKIP 769
>RTN1_HUMAN (Q16799) Reticulon-1 (Neuroendocrine-specific protein)| Length = 776 Score = 52.8 bits (125), Expect = 8e-07 Identities = 29/91 (31%), Positives = 51/91 (56%) Frame = -1 Query: 518 VNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIHTVPILYDKY 339 VN +L R + + DL L +W+L+ VG+ + LTL+ +AV+ + T+P++Y K+ Sbjct: 683 VNSTLKELRRLFLVQDLVDSLKFAVLMWLLTYVGALFNGLTLLLMAVVSMFTLPVVYVKH 742 Query: 338 QDKVDHFAGKAHTEACKHYEVLDQKVLSKIP 246 Q ++D + G T H + K+ +KIP Sbjct: 743 QAQIDQYLGLVRT----HINAVVAKIQAKIP 769
>RTN2_MOUSE (O70622) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 471 Score = 42.7 bits (99), Expect = 9e-04 Identities = 27/99 (27%), Positives = 52/99 (52%) Frame = -1 Query: 542 VSRALRNDVNRSLHLFREIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIHT 363 +S+ + + V + R + DL L + ++L+ VG+ + LTL+ + V+ + T Sbjct: 358 LSQQIASHVVSTATQLRHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTLVILGVVALFT 417 Query: 362 VPILYDKYQDKVDHFAGKAHTEACKHYEVLDQKVLSKIP 246 VP+LY ++Q ++D + G T H + K+ +KIP Sbjct: 418 VPLLYRQHQAQIDQYVGLV-TNQLSH---IKAKIRAKIP 452
>RTN2_HUMAN (O75298) Reticulon-2 (Neuroendocrine-specific protein-like 1)| (NSP-like protein 1) (NSPLI) Length = 545 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/83 (28%), Positives = 45/83 (54%) Frame = -1 Query: 494 REIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIHTVPILYDKYQDKVDHFA 315 R + DL L + ++L+ VG+ + LTL+ + V+ + T+P+LY ++Q ++D + Sbjct: 447 RHFFLVEDLVDSLKLALLFYILTFVGAIFNGLTLLILGVIGLFTIPLLYRQHQAQIDQYV 506 Query: 314 GKAHTEACKHYEVLDQKVLSKIP 246 G T H + K+ +KIP Sbjct: 507 GLV-TNQLSH---IKAKIRAKIP 525
>HAIR_RAT (P97609) Protein hairless| Length = 1181 Score = 32.7 bits (73), Expect = 0.88 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Frame = +2 Query: 116 PIWIGEPNCLVALRTWITEP----QTPSSMHARDSQHSRSSWFSPVLAVSCSKPSGPAPR 283 P+++G P+ V W + P T ++ A +S P + C P P P Sbjct: 265 PVFLGYPDT-VPRTPWPSCPPGLVHTLGNVWAGPGSNSFGYQLGPPVTPRCPSPGPPTPP 323 Query: 284 SACTPRYEPFRRSDP-PCPGTYRTRSAPCGSS 376 C + P R DP PC + + +P GSS Sbjct: 324 GGCCSSHLPAREGDPGPC---RKCQDSPEGSS 352
>LRP5_MOUSE (Q91VN0) Low-density lipoprotein receptor-related protein 5 precursor| (LRP7) (Lr3) Length = 1614 Score = 32.3 bits (72), Expect = 1.2 Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Frame = +2 Query: 173 PQTPSSMHARDSQHSRSSWFSPVLAVSCSKPSGPAPRSACTP--RYEPFRRSDPPCPGTY 346 P TP S DS +S S W S + + S P P TP +Y S PP PGT Sbjct: 1538 PTTPCSTDVCDSDYSISRWKSSKYYLDLNSDSDPYPPPP-TPHSQYLSAEDSCPPSPGTE 1596 Query: 347 RT 352 R+ Sbjct: 1597 RS 1598
>Y115_ADE02 (P03290) Hypothetical protein E-115| Length = 115 Score = 32.0 bits (71), Expect = 1.5 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 5/90 (5%) Frame = +2 Query: 122 WIGEPNCLVALRTWITEPQTPSSMHA---RDSQHSRSSWFSPVLAVSCSKPSGPAPRSAC 292 W PN + +W P + R+ SR S S L V + + P PR++C Sbjct: 5 WFLTPNGQSSPGSWNARPSAGPAARMPTPRNRYFSRPS--STPLKVCTAPRAAPPPRASC 62 Query: 293 TPRYEPFR--RSDPPCPGTYRTRSAPCGSS 376 PR P R P T+ TR A GS+ Sbjct: 63 APRATPRRGWTMTPWSNATWPTRRAKTGSA 92
>ZYX_HUMAN (Q15942) Zyxin (Zyxin-2)| Length = 572 Score = 32.0 bits (71), Expect = 1.5 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 9/55 (16%) Frame = +2 Query: 233 SPVLAVSCSKPSGPAPRS------ACTPRYEPFRRSD---PPCPGTYRTRSAPCG 370 SP ++VS S P+ AP+ A P+ PFR D PP PG R + G Sbjct: 7 SPAISVSVSAPAFYAPQKKFGPVVAPKPKVNPFRPGDSEPPPAPGAQRAQMGRVG 61
>VMTH_LAMBD (P03736) Minor tail protein H [Contains: Minor tail protein H*]| Length = 853 Score = 31.2 bits (69), Expect = 2.6 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%) Frame = -3 Query: 321 LRRKGSYRG-VQALRGAGPEGFEQDTARTGENQEDLECWLSR 199 L+R G G +QA A +GF+ T R EN LE W R Sbjct: 259 LQRSGDEAGALQAANEAATKGFDDQTRRLKENMGTLETWADR 300
>RTN2_YEAST (Q12443) Reticulon-like protein 2| Length = 393 Score = 31.2 bits (69), Expect = 2.6 Identities = 12/57 (21%), Positives = 30/57 (52%) Frame = -1 Query: 494 REIAMGHDLKKFLGVIAGLWVLSEVGSCCDFLTLIYIAVLMIHTVPILYDKYQDKVD 324 R++ H + + L+ L + + T++ + + ++TVP++YD+ Q ++D Sbjct: 126 RKLVFAHRTRNNFTIGVSLYFLHGLFAIFSMNTVLIMTTIFLYTVPLIYDRKQARID 182
>CS007_MOUSE (Q6ZPZ3) Zinc finger CCCH-type domain-containing protein C19orf7| homolog Length = 1304 Score = 30.8 bits (68), Expect = 3.4 Identities = 21/68 (30%), Positives = 26/68 (38%) Frame = +2 Query: 236 PVLAVSCSKPSGPAPRSACTPRYEPFRRSDPPCPGTYRTRSAPCGSSGQRCISR*GNHSS 415 P V+ S+ + P P A P P S PP Y R G GQ S + S Sbjct: 1086 PADPVAASRAAKPCPTEASPPAASPSGDSSPPATAPYDPRVLAAGGLGQGSSSGQSSVLS 1145 Query: 416 FRLLTEPR 439 L +PR Sbjct: 1146 GISLYDPR 1153
>ALG10_NEUCR (Q7SA35) Alpha-1,2 glucosyltransferase alg-10 (EC 2.4.1.-)| (Alpha-2-glucosyltransferase ALG10) (Dolichyl-phosphoglucose-dependent glucosyltransferase ALG10) (Asparagine-linked glycosylation protein 10) Length = 770 Score = 30.8 bits (68), Expect = 3.4 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Frame = +2 Query: 134 PNCLVALRTWITEPQTPSSMHARDSQHSRSSW--FSPVLAVSCSKPSGPAPRSACTP 298 P L L IT +TP+ H RSSW P + S + P RS TP Sbjct: 376 PRVLSTLADLITHARTPTPSHTTTKDPGRSSWRFTKPSITSKKSSTTKPPQRSGPTP 432
>WNK4_RAT (Q7TPK6) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein| kinase with no lysine 4) (Protein kinase, lysine-deficient 4) Length = 1222 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = +2 Query: 173 PQTPSSMHARDSQHSRSSWFSPVLAVSCSKPSGPA-PRSACTPRYEPFRRSDPPCPGT 343 PQ PSS+ S S+ + SP L S P P+ P+ P P S PP P T Sbjct: 843 PQAPSSLLPSSSGASQVPFPSPSLPTSSPLPFSPSYPQVPLHPASLPTCPSPPPLPST 900
>IF2_LEPIN (Q8F7K1) Translation initiation factor IF-2| Length = 880 Score = 30.4 bits (67), Expect = 4.4 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Frame = +2 Query: 263 PSGPAPRSACTPRYEPFRRSDP---------PCPGTYR----TRSAPCGSSGQRCISR*G 403 PS P+P A +P+ E SDP P P R AP S + G Sbjct: 50 PSTPSP--AASPKKETVAESDPSSKPPVMPLPLPDDSGQSPIVRPAPSSHSPAKREESPG 107 Query: 404 NHSSFRLLTEPRDQQSHQGISSDHAPLRSPGTSE 505 + R PRD+ + QG S + P RSP E Sbjct: 108 KQDAGR---PPRDKDTRQGGGSSYPPSRSPFQKE 138
>C78A1_MAIZE (P48420) Cytochrome P450 78A1 (EC 1.14.-.-) (CYPLXXVIII)| Length = 547 Score = 30.4 bits (67), Expect = 4.4 Identities = 28/84 (33%), Positives = 31/84 (36%), Gaps = 16/84 (19%) Frame = +2 Query: 146 VALRTWITEPQTPSSMHARDSQHSRSSW---FSPVLAVSCSKPSGPAPRSACT-PRYEP- 310 VAL W T P P+ + R + S SW P A S P APR PR P Sbjct: 47 VALLAWATSPGGPAWTNGRGASASLLSWDPVVCPCSAASSRCPGAAAPRPRRDGPRRRPR 106 Query: 311 ------FRRSDPP-----CPGTYR 349 F D P CP T R Sbjct: 107 AKELMAFSVGDTPAVVSSCPATAR 130
>HIW_DROME (Q9NB71) Ubiquitin ligase protein highwire (EC 6.3.2.-) (Protein| pam/highwire/rpm-1) Length = 5233 Score = 30.0 bits (66), Expect = 5.7 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%) Frame = +2 Query: 197 ARDSQHSRSSWFSPVLAVSCSKPS-GPAPRSACTPRYEPFRRSDP 328 A + H RS+ +A C P G AP SA P P R DP Sbjct: 2598 AAPNTHQRSASVQLTMASCCRSPGCGNAPGSAAAPSSMPLRSQDP 2642
>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2| Length = 891 Score = 30.0 bits (66), Expect = 5.7 Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 13/94 (13%) Frame = +2 Query: 263 PSGPAPRSACTPRYEPFRRSDP---------PCPGTYR----TRSAPCGSSGQRCISR*G 403 PS P+P A +P+ E S P P PG R AP S + G Sbjct: 50 PSTPSP--AASPKKETVAESAPSSKPPVMPLPLPGDSGQSPIVRPAPSSHSPAKREESPG 107 Query: 404 NHSSFRLLTEPRDQQSHQGISSDHAPLRSPGTSE 505 + R PRD+ + QG S + P RSP E Sbjct: 108 KQDAGR---PPRDKDTRQGGGSSYPPSRSPFQKE 138
>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)| (Trinucleotide repeat-containing gene 13 protein) Length = 1312 Score = 30.0 bits (66), Expect = 5.7 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Frame = +2 Query: 128 GEPNCLVALRTWITEPQTPSSMHARDSQ-HSRSSWFSPVLAVSCSKPSGPAPRSACTPRY 304 G P V + + P P + R S +R+S P VS ++P+ PR AC P Y Sbjct: 99 GPPRPFVVVLLPLASPGAPPAAPTRASPLGARAS--PPRSGVSLARPAPGCPRPACEPVY 156 Query: 305 EPFRRSDPP 331 P S P Sbjct: 157 GPLTMSLKP 165
>RNF31_HUMAN (Q96EP0) RING finger protein 31 (Zinc in-between-RING-finger| ubiquitin-associated domain protein) Length = 1072 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/45 (35%), Positives = 19/45 (42%) Frame = +2 Query: 242 LAVSCSKPSGPAPRSACTPRYEPFRRSDPPCPGTYRTRSAPCGSS 376 + V C++ S P P Y PP PG R SAP SS Sbjct: 428 VCVMCNRTSSPIPAQHAPRPYASSLEKGPPKPGPPRRLSAPLPSS 472
>TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA) (Major surface| antigen) Length = 1162 Score = 29.6 bits (65), Expect = 7.5 Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 14/123 (11%) Frame = +2 Query: 173 PQTP--SSMHARDSQHSRSSWF----SPVLAVSCSKPSGPAPRSACTPRYEPFRRSDPPC 334 P TP SS H+ S + SS +PV + + S PS PA SA + P S Sbjct: 852 PSTPADSSAHSTPSTPADSSAHGTPSTPVDSSAHSTPSTPADSSAHSTPSTPVDSSAHST 911 Query: 335 PGT------YRTRSAPCGSSGQRCISR*GNHSSFRLLTEPRDQQSHQGIS--SDHAPLRS 490 P T + T S P SS S + S+ + P D +H S +D + + Sbjct: 912 PSTPADSSAHGTPSTPVDSSAHGTPSTPADSSAHSTPSTPADSSAHSTPSTPADSSAHST 971 Query: 491 PGT 499 P T Sbjct: 972 PST 974
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.6 bits (65), Expect = 7.5 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Frame = +2 Query: 167 TEPQTPSSMHARDSQHSRSSWFSPVLAVSCSKPSGPAPRSACTPRYEP----FRRSDPPC 334 T ++PS R SRS +SP S + P+PR PR P RRS P Sbjct: 288 TRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRR--RPSPRRRTPPRRMPPPPRHRRSRSPV 345 Query: 335 PGTYRTRSAPCGSSGQRCISR 397 R+ ++ GSS SR Sbjct: 346 RRRRRSSASLSGSSSSSSSSR 366
>LRP5_HUMAN (O75197) Low-density lipoprotein receptor-related protein 5 precursor| Length = 1615 Score = 29.6 bits (65), Expect = 7.5 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = +2 Query: 173 PQTPSSMHARDSQHSRSSWFSPVLAVSCSKPSGPAPRSACTP--RYEPFRRSDPPCPGTY 346 P TP S DS +S S W + + + S P P TP +Y S PP P T Sbjct: 1539 PTTPCSTDVCDSDYSASRWKASKYYLDLNSDSDPYPPPP-TPHSQYLSAEDSCPPSPATE 1597 Query: 347 RT 352 R+ Sbjct: 1598 RS 1599
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 29.6 bits (65), Expect = 7.5 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Frame = +2 Query: 167 TEPQTPSSMHARDSQHSRSSWFSPVLAVSCSKPSGPAPRSACTPRYEP----FRRSDPPC 334 T ++PS R SRS +SP S + P+PR PR P RRS P Sbjct: 288 TRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRR--RPSPRRRTPPRRMPPPPRHRRSRSPV 345 Query: 335 PGTYRTRSAPCGSSGQRCISR 397 R+ ++ GSS SR Sbjct: 346 RRRRRSSASLSGSSSSSSSSR 366
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype 1)| (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 29.6 bits (65), Expect = 7.5 Identities = 26/72 (36%), Positives = 31/72 (43%) Frame = +2 Query: 170 EPQTPSSMHARDSQHSRSSWFSPVLAVSCSKPSGPAPRSACTPRYEPFRRSDPPCPGTYR 349 EP+TP+ RDS R+ SP A + PS PA + A TP PP P Sbjct: 905 EPRTPAERAPRDSPDGRAP-RSPSPAPE-NTPSDPADQGARTP------SKGPPAPA--- 953 Query: 350 TRSAPCGSSGQR 385 AP G G R Sbjct: 954 --PAPGGGGGHR 963
>JAG2_HUMAN (Q9Y219) Jagged-2 precursor (Jagged2) (HJ2)| Length = 1238 Score = 29.6 bits (65), Expect = 7.5 Identities = 20/55 (36%), Positives = 25/55 (45%) Frame = +2 Query: 251 SCSKPSGPAPRSACTPRYEPFRRSDPPCPGTYRTRSAPCGSSGQRCISR*GNHSS 415 +CS P P P AC + P PGT S CG G RC+S+ G + S Sbjct: 570 NCSVPREPCPGGACRVIDGCGSDAGPGMPGT--AASGVCGPHG-RCVSQPGGNFS 621
>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)| Length = 2469 Score = 29.6 bits (65), Expect = 7.5 Identities = 15/63 (23%), Positives = 27/63 (42%) Frame = +2 Query: 182 PSSMHARDSQHSRSSWFSPVLAVSCSKPSGPAPRSACTPRYEPFRRSDPPCPGTYRTRSA 361 P+ + + R +W PV + +C + P+ RS P R+ P PG +++ Sbjct: 375 PAGASSLTAPRGREAWLVPVPSPACVSNTHPSRRSQDPALSPPIRQLQLPGPGVAKSKDG 434 Query: 362 PCG 370 G Sbjct: 435 ILG 437
>USH2A_RAT (Q8K3K1) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 1512 Score = 29.3 bits (64), Expect = 9.8 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 12/76 (15%) Frame = -1 Query: 209 GCLVRACCSVFVVP*SMC------VVPLDSSVPRSIWVMPPDSYSTYS----VLPCAPHV 60 GC C S+ + SMC + L R P YS+ S LPC H Sbjct: 892 GCQACDCDSLGTLLGSMCDPVSGQCLCLPHRQERRCVQCQPGCYSSPSNATGCLPCLCHT 951 Query: 59 LAI--CICNSENWNCY 18 +A CICNS +CY Sbjct: 952 VATKNCICNSVTGHCY 967
>FOG1_HUMAN (Q8IX07) Zinc finger protein ZFPM1 (Zinc finger protein multitype 1)| (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 1004 Score = 29.3 bits (64), Expect = 9.8 Identities = 18/54 (33%), Positives = 20/54 (37%) Frame = +2 Query: 263 PSGPAPRSACTPRYEPFRRSDPPCPGTYRTRSAPCGSSGQRCISR*GNHSSFRL 424 P GP P A P P PP P +Y + S G GNH RL Sbjct: 927 PPGPPPSPAAAPEAVP----PPPAPPSYSDKGVQTPSKGTPAPLPNGNHRYCRL 976
>PRIA_LENED (Q01200) Protein priA precursor| Length = 258 Score = 29.3 bits (64), Expect = 9.8 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 25/97 (25%) Frame = +2 Query: 122 WIGEPNCLVALRTWITEPQTPSSMHARDSQHSRSS---------------WFSPVLAVSC 256 W E C + T TPSS H + S SS W S +L + Sbjct: 85 WNDEKTCCLPKWPTSTPTPTPSSAHHTSTHTSPSSTPTSTPPPQCSNGWDWISSLLCCTP 144 Query: 257 SKPSGPA--PRSACTP--------RYEPFRRSDPPCP 337 S PS P+ P+ + TP + R+ P CP Sbjct: 145 SSPSKPSSTPKPSATPNKGNGHHYKRAHVARAVPACP 181
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 29.3 bits (64), Expect = 9.8 Identities = 18/49 (36%), Positives = 22/49 (44%) Frame = +2 Query: 233 SPVLAVSCSKPSGPAPRSACTPRYEPFRRSDPPCPGTYRTRSAPCGSSG 379 SP L + PAPR P P S P PG + RS+P G +G Sbjct: 2006 SPSLLPASDHKVSPAPR----PSSLPILPSGPIYPGLFDIRSSPTGGAG 2050
>K1H1_HUMAN (Q15323) Keratin, type I cuticular Ha1 (Hair keratin, type I Ha1)| Length = 416 Score = 29.3 bits (64), Expect = 9.8 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%) Frame = +2 Query: 251 SCSKPSGPAPRSACTPRYEPFRRSDPPC-PGTYRTRSAPCGS 373 +CSKP GP + CT P PC P R R PC S Sbjct: 377 ACSKPIGPCLSNPCTSCVPP-----APCTPCAPRPRCGPCNS 413
>P3P_LACLC (P15292) PIII-type proteinase precursor (EC 3.4.21.96) (Lactocepin)| (Cell wall-associated serine proteinase) Length = 1902 Score = 29.3 bits (64), Expect = 9.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 365 TVPILYDKYQDKVDHFAGKAHTEACKHYE 279 ++P+ Y +VD +A KAHT+ KH++ Sbjct: 1179 SMPVTNADYAAQVDLYADKAHTQLLKHFD 1207
>P2P_LACLC (P15293) PII-type proteinase precursor (EC 3.4.21.96) (Lactocepin)| (Cell wall-associated serine proteinase) (LP151) Length = 1902 Score = 29.3 bits (64), Expect = 9.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 365 TVPILYDKYQDKVDHFAGKAHTEACKHYE 279 ++P+ Y +VD +A KAHT+ KH++ Sbjct: 1179 SMPVTNADYAAQVDLYADKAHTQLLKHFD 1207
>P1P_LACLC (P16271) PI-type proteinase precursor (EC 3.4.21.-) (Wall-associated| serine proteinase) Length = 1902 Score = 29.3 bits (64), Expect = 9.8 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = -1 Query: 365 TVPILYDKYQDKVDHFAGKAHTEACKHYE 279 ++P+ Y +VD +A KAHT+ KH++ Sbjct: 1179 SMPVTNADYAAQVDLYADKAHTQLLKHFD 1207 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,925,547 Number of Sequences: 219361 Number of extensions: 2231252 Number of successful extensions: 6440 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 6062 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6405 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5653129581 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
