ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14n14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin... 127 2e-29
2PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi... 123 6e-28
3PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi... 123 6e-28
4PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi... 123 6e-28
5YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12 95 2e-19
6YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4 94 4e-19
7SGN1_YEAST (P40561) RNA-binding protein SGN1 92 1e-18
8RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p... 67 6e-11
9RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p... 63 7e-10
10RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro... 63 7e-10
11DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein) 62 1e-09
12NOP12_CANGA (Q6FUS6) Nucleolar protein 12 59 1e-08
13NOP12_KLULA (Q6CKV6) Nucleolar protein 12 59 1e-08
14NOP12_ASHGO (Q75BJ7) Nucleolar protein 12 58 3e-08
15PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g... 57 4e-08
16NOP12_YEAST (Q08208) Nucleolar protein 12 56 8e-08
17SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized ... 56 8e-08
18DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autoso... 56 1e-07
19SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized ... 56 1e-07
20SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized ... 55 2e-07
21RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U... 54 4e-07
22DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autoso... 54 5e-07
23SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nucl... 53 7e-07
24NOP12_SCHPO (O13741) Nucleolar protein 12 53 9e-07
25DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autoso... 53 9e-07
26DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autoso... 52 1e-06
27DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in azoosp... 52 1e-06
28RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-bindin... 52 2e-06
29GAR2_SCHPO (P41891) Protein gar2 51 4e-06
30ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor 50 6e-06
31DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4 50 8e-06
32CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit... 50 8e-06
33CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit... 50 8e-06
34RNP24_SCHPO (Q09100) RNA-binding protein rnp24 50 8e-06
35RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif pro... 50 8e-06
36DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2 50 8e-06
37NUCL_XENLA (P20397) Nucleolin (Protein C23) 50 8e-06
38DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3 50 8e-06
39DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1 50 8e-06
40CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit... 49 1e-05
41CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit... 49 1e-05
42NOP12_YARLI (Q6C2Q7) Nucleolar protein 12 49 1e-05
43CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit... 49 1e-05
44MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing prote... 49 1e-05
45GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein ... 49 1e-05
46CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit... 49 1e-05
47RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif pro... 49 2e-05
48RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-ri... 49 2e-05
49HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34) 49 2e-05
50NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2 49 2e-05
51ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (... 48 2e-05
52NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2 48 3e-05
53CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcrip... 48 3e-05
54NUCL_CHICK (P15771) Nucleolin (Protein C23) 47 4e-05
55MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing prote... 47 4e-05
56ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, ... 47 4e-05
57PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi... 46 9e-05
58RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding ... 46 1e-04
59HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4... 46 1e-04
60RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-bindin... 46 1e-04
61YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 i... 45 1e-04
62RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (He... 45 2e-04
63NUCL_MACFA (Q4R4J7) Nucleolin 45 2e-04
64NUCL_HUMAN (P19338) Nucleolin (Protein C23) 45 2e-04
65NUCL_PONPY (Q5RF26) Nucleolin 45 2e-04
66RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U... 45 3e-04
67RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Co... 45 3e-04
68RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif pro... 45 3e-04
69MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote... 45 3e-04
70RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U... 45 3e-04
71RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U... 44 3e-04
72RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U... 44 3e-04
73ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 ... 44 3e-04
74NOP12_CANAL (Q5AHI7) Nucleolar protein 12 44 3e-04
75PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-bind... 44 3e-04
76PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-bi... 44 3e-04
77PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-bindi... 44 3e-04
78ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloro... 44 3e-04
79PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-b... 44 3e-04
80RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F... 44 4e-04
81MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing prote... 44 4e-04
82ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (... 44 4e-04
83ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/... 44 4e-04
84RNP4F_DROME (Q9W4D2) RNA-binding protein 4F 44 4e-04
85RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA 44 4e-04
86ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/... 44 4e-04
87BOLL_MACFA (Q8WP23) Protein boule-like 44 4e-04
88BOLL_HUMAN (Q8N9W6) Protein boule-like 44 4e-04
89ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1 (... 44 6e-04
90PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-bi... 44 6e-04
91PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-bi... 44 6e-04
92PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-bi... 44 6e-04
93ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1 (He... 44 6e-04
94ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1 (... 44 6e-04
95ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1 (... 44 6e-04
96ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1 (... 44 6e-04
97ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precur... 43 7e-04
98RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding ... 43 7e-04
99DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protei... 43 7e-04
100BOLL_MOUSE (Q924M5) Protein boule-like 43 7e-04
101MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote... 43 7e-04
102SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35) 43 0.001
103MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing prote... 43 0.001
104RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 h... 43 0.001
105MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing prote... 42 0.001
106NUCL_MOUSE (P09405) Nucleolin (Protein C23) 42 0.001
107SXL_MUSDO (O17310) Sex-lethal homolog 42 0.002
108CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (C... 42 0.002
109CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (C... 42 0.002
110SXL_CHRRU (O97018) Sex-lethal homolog 42 0.002
111ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast prec... 42 0.002
112PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-bi... 42 0.002
113HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (... 42 0.002
114PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-bi... 41 0.003
115PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-bi... 41 0.003
116PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-bi... 41 0.003
117PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-bi... 41 0.003
118PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-bi... 41 0.003
119PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-bi... 41 0.003
120IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H ... 41 0.003
121IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H ... 41 0.003
122MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing prote... 41 0.003
123MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musa... 41 0.003
124GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2 41 0.003
125NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NO... 41 0.003
126ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hn... 41 0.004
127ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (... 41 0.004
128MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156) 41 0.004
129MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2) 41 0.004
130MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing prote... 41 0.004
131MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing prote... 41 0.004
132ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (... 41 0.004
133PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic a... 40 0.005
134DAZ1_CAEEL (Q20870) DAZ protein 1 40 0.005
135NSR1_YEAST (P27476) Nuclear localization sequence-binding protei... 40 0.005
136GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-indu... 40 0.005
137SXL_MEGSC (O01671) Sex-lethal homolog 40 0.005
138RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif p... 40 0.005
139RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif p... 40 0.005
140HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (... 40 0.005
141RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U... 40 0.005
142BOULE_DROME (Q24207) Protein boule 40 0.006
143PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-bin... 40 0.006
144NUCL_MESAU (P08199) Nucleolin (Protein C23) 40 0.006
145HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (... 40 0.006
146RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, ch... 40 0.006
147HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hn... 40 0.006
148NUCL_RAT (P13383) Nucleolin (Protein C23) 40 0.006
149FCA_ARATH (O04425) Flowering time control protein FCA 40 0.006
150RB97D_DROME (Q02926) Ribonucleoprotein RB97D 40 0.008
151MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musa... 40 0.008
152RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 h... 40 0.008
153PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-bi... 40 0.008
154RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 h... 40 0.008
155RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 h... 40 0.008
156RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-bindi... 39 0.011
157RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-bindi... 39 0.011
158HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (... 39 0.011
159HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (... 39 0.011
160RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HS... 39 0.011
161RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-bindin... 39 0.011
162RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15 39 0.011
163PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-bindi... 39 0.011
164HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn... 39 0.011
165MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musa... 39 0.011
166RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif p... 39 0.011
167RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif p... 39 0.011
168TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein 39 0.014
169SXL_CERCA (O61374) Sex-lethal homolog (CCSXL) 39 0.014
170IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ... 39 0.014
171HSH49_YEAST (Q99181) Protein HSH49 39 0.014
172MODU_DROME (P13469) DNA-binding protein modulo 39 0.014
173SCE3_SCHPO (O14369) Probable RNA-binding protein sce3 39 0.014
174PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-... 39 0.014
175RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, fa... 39 0.014
176RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ss... 39 0.014
177RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri... 39 0.014
178RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri... 39 0.018
179MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phos... 39 0.018
180ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precur... 39 0.018
181SXL_DROSU (Q24668) Protein sex-lethal 39 0.018
182SXL_DROME (P19339) Protein sex-lethal 39 0.018
183RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protei... 39 0.018
184NOP12_DEBHA (Q6BTS9) Nucleolar protein 12 38 0.024
185ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precur... 38 0.024
186RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif p... 38 0.024
187YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 ... 38 0.024
188PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-... 38 0.024
189RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C... 38 0.024
190IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SN... 38 0.031
191GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1) 38 0.031
192RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-ri... 38 0.031
193GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1) 38 0.031
194FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protei... 37 0.041
195FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protei... 37 0.041
196IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ... 37 0.041
197EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Emb... 37 0.041
198EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (... 37 0.041
199RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif p... 37 0.041
200RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif pro... 37 0.041
201RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif p... 37 0.041
202RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif pro... 37 0.041
203RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif p... 37 0.041
204RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif pro... 37 0.041
205PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (6... 37 0.041
206U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 aux... 37 0.041
207RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif pro... 37 0.053
208RSD1_SCHPO (O13845) RNA-binding protein rsd1 37 0.053
209RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif pro... 37 0.053
210MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phos... 37 0.053
211RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1 37 0.053
212RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif p... 37 0.070
213SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12 (S... 37 0.070
214G3BP_SCHPO (O94260) Putative G3BP-like protein 36 0.091
215U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 aux... 36 0.091
216U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 aux... 36 0.091
217SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein) 36 0.091
218U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux... 36 0.091
219MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog) (SMA... 36 0.12
220THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1... 36 0.12
221IF34_CAEEL (Q19706) Probable eukaryotic translation initiation f... 36 0.12
222SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12 (Ser... 36 0.12
223MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog) (SMA... 36 0.12
224HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (... 36 0.12
225HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (... 36 0.12
226SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12 (S... 36 0.12
227U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 aux... 35 0.15
228HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' ... 35 0.15
229EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (... 35 0.15
230HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' ... 35 0.20
231REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2 35 0.20
232THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and expor... 35 0.20
233YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 i... 34 0.35
234SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a... 34 0.35
235RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin... 34 0.35
236CB017_HUMAN (Q8NC44) Protein C2orf17 34 0.35
237NOP12_GIBZE (Q4IQW0) Nucleolar protein 12 34 0.35
238NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting... 34 0.45
239CB017_MOUSE (Q6NS82) Protein C2orf17 homolog 34 0.45
240YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c... 33 0.59
241PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 33 0.59
242PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 33 0.59
243MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phos... 33 0.59
244RBP1_DROME (Q02427) RNA-binding protein 1 33 0.77
245RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif pro... 33 0.77
246PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.... 33 0.77
247SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp... 33 1.0
248NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding pr... 33 1.0
249LARK_DROME (Q94901) RNA-binding protein lark 33 1.0
250NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding pr... 33 1.0
251NONO_HUMAN (Q15233) Non-POU domain-containing octamer-binding pr... 33 1.0
252SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7 33 1.0
253NONO_RAT (Q5FVM4) Non-POU domain-containing octamer-binding prot... 33 1.0
254CAZ_DROME (Q27294) RNA-binding protein cabeza (Sarcoma-associate... 32 1.3
255YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5 32 1.3
256MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phos... 32 1.7
257MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing prote... 31 2.9
258RNPS1_RAT (Q6AYK1) RNA-binding protein with serine-rich domain 1 31 2.9
259RNPS1_PONPY (Q5NVM8) RNA-binding protein with serine-rich domain 1 31 2.9
260RNPS1_MOUSE (Q99M28) RNA-binding protein with serine-rich domain 1 31 2.9
261RNPS1_MACFA (Q4R5N1) RNA-binding protein with serine-rich domain 1 31 2.9
262RNPS1_HUMAN (Q15287) RNA-binding protein with serine-rich domain... 31 2.9
263RBM25_HUMAN (P49756) Probable RNA-binding protein 25 (RNA-bindin... 31 2.9
264RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif p... 31 2.9
265RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif p... 31 2.9
266SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pr... 31 2.9
267SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pr... 31 2.9
268SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1 31 3.8
269SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-lik... 31 3.8
270NRD1_SCHPO (Q09702) Negative regulator of differentiation 1 (Mul... 31 3.8
271SPEN_DROME (Q8SX83) Protein split ends 30 5.0
272AKAP9_RABIT (Q28628) A-kinase anchor protein 9 (Protein kinase A... 30 5.0
273NOP12_EMENI (Q5BDC8) Nucleolar protein 12 30 6.5
274HEMO_RAT (P20059) Hemopexin precursor 30 8.5 
>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score =  127 bits (320), Expect = 2e-29
 Identities = 71/124 (57%), Positives = 88/124 (70%), Gaps = 6/124 (4%)
 Frame = -2

Query: 658 EMQAKVAK--EMQGGDPNATTS--EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVN 491
           EM+A+ AK   MQ    N T +    KE +D++SV+VGNVDY+ TPEE+Q HF SCG+VN
Sbjct: 23  EMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVN 82

Query: 490 RVTILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRG 314
           RVTIL DKF G PKGFAY+EF E   +  A+ L+ S LH R +KV PKRTNVPG+ + RG
Sbjct: 83  RVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRG 142

Query: 313 -GRG 305
            GRG
Sbjct: 143 RGRG 146
to top
>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score =  123 bits (308), Expect = 6e-28
 Identities = 65/128 (50%), Positives = 84/128 (65%), Gaps = 7/128 (5%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTS------EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSC 503
           L+E+Q +V K+M    P           E K E D+RS++VGNVDY  T EE++ HF+ C
Sbjct: 131 LKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGC 190

Query: 502 GTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLK 326
           G+VNRVTIL DKF G PKGFAY+EF + E+++ ++ L ES   GRQIKV PKRTN PG+ 
Sbjct: 191 GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS 250

Query: 325 QPRGGRGF 302
                RGF
Sbjct: 251 TT--DRGF 256
to top
>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score =  123 bits (308), Expect = 6e-28
 Identities = 65/128 (50%), Positives = 84/128 (65%), Gaps = 7/128 (5%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTS------EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSC 503
           L+E+Q +V K+M    P           E K E D+RS++VGNVDY  T EE++ HF+ C
Sbjct: 135 LKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGC 194

Query: 502 GTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLK 326
           G+VNRVTIL DKF G PKGFAY+EF + E+++ ++ L ES   GRQIKV PKRTN PG+ 
Sbjct: 195 GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS 254

Query: 325 QPRGGRGF 302
                RGF
Sbjct: 255 TT--DRGF 260
to top
>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score =  123 bits (308), Expect = 6e-28
 Identities = 65/128 (50%), Positives = 84/128 (65%), Gaps = 7/128 (5%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTS------EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSC 503
           L+E+Q +V K+M    P           E K E D+RS++VGNVDY  T EE++ HF+ C
Sbjct: 135 LKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGC 194

Query: 502 GTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLK 326
           G+VNRVTIL DKF G PKGFAY+EF + E+++ ++ L ES   GRQIKV PKRTN PG+ 
Sbjct: 195 GSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS 254

Query: 325 QPRGGRGF 302
                RGF
Sbjct: 255 TT--DRGF 260
to top
>YQOC_CAEEL (Q09301) Putative RNA-binding protein EEED8.12|
          Length = 197

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 47/113 (41%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           L ++Q K+AK ++       T E ++ +D++SVF+GNVD+  T EEV++HF  CG + R 
Sbjct: 31  LEQIQNKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRT 90

Query: 484 TILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGL 329
           TI  DKF  + K FAY+EF ++ +I+ A+ ++ S    R I V  KRTN+PG+
Sbjct: 91  TIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143
to top
>YQO4_CAEEL (Q09295) Putative RNA-binding protein EEED8.4|
          Length = 237

 Score = 94.0 bits (232), Expect = 4e-19
 Identities = 45/113 (39%), Positives = 74/113 (65%), Gaps = 1/113 (0%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           L+++Q K+AK ++       T E ++ +D++SVF+GNVD+  T EE+++HF  CG + + 
Sbjct: 71  LQQIQNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKT 130

Query: 484 TILTDKF-GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGL 329
           TI  DKF  + K FAY+EF ++ +I+ A+ ++ S    R I V  KRTN+PG+
Sbjct: 131 TIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 183
to top
>SGN1_YEAST (P40561) RNA-binding protein SGN1|
          Length = 250

 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 8/120 (6%)
 Frame = -2

Query: 658 EMQAKVAKEMQGGDPNATTSEAKEEM-------DSRSVFVGNVDYACTPEEVQQHFNSCG 500
           E+   V K    G P  +   +KEE        DSRS+FVGN+    TPE+++ HF  CG
Sbjct: 29  ELDELVGKLSIEGTPQVSQKLSKEEKHAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCG 88

Query: 499 TVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQ 323
            + R+T+L D+  G PKG+ Y+EF      ++A++L+  EL G++I V+ KRTN+PG  +
Sbjct: 89  QIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNR 148
to top
>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 66.6 bits (161), Expect = 6e-11
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 404
           D RSVFVGN+ Y      +++HF  CG++  V I+ DK  G  KGF YV F   +++  A
Sbjct: 285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLA 344

Query: 403 VKLSESELHGRQIKV 359
           +KL+ SEL GR+++V
Sbjct: 345 LKLNNSELMGRKLRV 359
to top
>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 404
           D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   +A+  A
Sbjct: 289 DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 348

Query: 403 VKLSESELHGRQIKVAPKRTNVPGLKQ 323
           +KL+ SEL GR+++V  +  N   LKQ
Sbjct: 349 LKLNNSELMGRKLRVM-RSVNKEKLKQ 374
to top
>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAIQEA 404
           D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   +A+  A
Sbjct: 283 DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLA 342

Query: 403 VKLSESELHGRQIKVAPKRTNVPGLKQ 323
           +KL+ SEL GR+++V  +  N   LKQ
Sbjct: 343 LKLNNSELMGRKLRVM-RSVNKEKLKQ 368
to top
>DAZL_CHICK (Q804A9) Deleted in azoospermia-like (DAZ-like protein)|
          Length = 289

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E++ +F   GTV  V I+TD+ G  KG+ +V F++   +Q+ V+ S
Sbjct: 37  TVFVGGIDIRMNEAEIRSYFEQYGTVKEVKIITDRTGVSKGYGFVSFLDNVDVQKIVE-S 95

Query: 391 ESELHGRQIKVAP---KRTNVPGLKQPR 317
           +  +HG+++K+ P   K+ N+    QPR
Sbjct: 96  QISVHGKRLKLGPAIRKQQNLCSYMQPR 123
to top
>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 398
           RSVFVGN+D+    E + +HF +CG++  V I+ D K    KGFAYV+F E +++ +A+ 
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287

Query: 397 LSESELHGRQIKVAPKRTNVPGLKQPR 317
           L+E  +  +   +  ++  V   K  R
Sbjct: 288 LNEKPMISQNEHLKKRKLRVTRCKNIR 314
to top
>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 398
           RSVFVGN+D+    E + +HF  CG +  V I+ D K    KGFAYV+F + +++ +A+ 
Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 418

Query: 397 LSESELH 377
           L E ++H
Sbjct: 419 LHEKKIH 425
to top
>NOP12_ASHGO (Q75BJ7) Nucleolar protein 12|
          Length = 426

 Score = 57.8 bits (138), Expect = 3e-08
 Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 398
           RSVFVGN+D+  + E + +HF SCG +  V I+ D K    KGFAYV+F +  ++ +A+ 
Sbjct: 259 RSVFVGNLDFEESEESLWKHFMSCGPIEYVRIVRDPKTNVGKGFAYVQFADLVSVNKALL 318

Query: 397 LSESEL---HGRQIKV 359
           L++ ++    GR+++V
Sbjct: 319 LNDKKMAVGKGRKLRV 334
to top
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 57.4 bits (137), Expect = 4e-08
 Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +++V NV+ A T EE+++HF+ CGT+    ++ D+ G+ KGF +V F   E   +AVK  
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364

Query: 391 ESEL-HGRQIKVA 356
             ++ HG+ + VA
Sbjct: 365 HGQMFHGKPLYVA 377
to top
>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 398
           RS+FVGN+D+    E + +HF  CG +  V I+ D K    KGFAYV+F + +++ +A+ 
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338

Query: 397 LSESELHGRQ 368
           L+E  +  ++
Sbjct: 339 LNEKPMKSQK 348
to top
>SART3_PONPY (Q5REG1) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3)
          Length = 981

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
 Frame = -2

Query: 619  DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 440
            +P+         ++   +F+  + ++CT EE+++   + GTV  + ++T++ G+PKG AY
Sbjct: 804  NPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 863

Query: 439  VEFV-EAEAIQEAVKLSESELHGRQIKVA---PKRTNVPGLKQPRGGRG 305
            VE+  E++A Q  +K+    +    IKVA   P +  VP   + R   G
Sbjct: 864  VEYENESQASQAVMKMDGMTIKENVIKVAISNPPQRKVPEKPETRKAPG 912



 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 407
           DS +VFV N+ Y+    + +    F +CG V ++  +    G  +G+ YVEF E ++  +
Sbjct: 720 DSITVFVSNLPYSMQEPDAKLRPLFEACGEVVQIRPIFSNRGDFRGYRYVEFKEEKSALQ 779

Query: 406 AVKLSESELHGRQIKVAP 353
           A+++    + GR + V+P
Sbjct: 780 ALEMDRKSVEGRPMFVSP 797
to top
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 298

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
 Frame = -2

Query: 643 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 476
           V++E      +ATTS+     + ++   +VFVG +D      E++  F   G+V  V I+
Sbjct: 13  VSREASTQSSSATTSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72

Query: 475 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 353
           TD+ G  KG+ +V F     +Q+ V+ S+   HG+++K+ P
Sbjct: 73  TDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 112
to top
>SART3_HUMAN (Q15020) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (hSART-3) (Tat-interacting protein of 110 kDa)
            (Tip110)
          Length = 963

 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 4/109 (3%)
 Frame = -2

Query: 619  DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 440
            +P+         ++   +F+  + ++CT EE+++   + GTV  + ++T++ G+PKG AY
Sbjct: 786  NPDFKVFRYSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAY 845

Query: 439  VEFV-EAEAIQEAVKLSESELHGRQIKVA---PKRTNVPGLKQPRGGRG 305
            VE+  E++A Q  +K+    +    IKVA   P +  VP   + R   G
Sbjct: 846  VEYENESQASQAVMKMDGMTIKENIIKVAISNPPQRKVPEKPETRKAPG 894



 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 407
           DS +VFV N+ Y+    + +    F +CG V ++  +    G  +G+ YVEF E ++  +
Sbjct: 702 DSITVFVSNLPYSMQEPDTKLRPLFEACGEVVQIRPIFSNRGDFRGYCYVEFKEEKSALQ 761

Query: 406 AVKLSESELHGRQIKVAP 353
           A+++    + GR + V+P
Sbjct: 762 ALEMDRKSVEGRPMFVSP 779
to top
>SART3_MOUSE (Q9JLI8) Squamous cell carcinoma antigen recognized by T-cells 3|
            (SART-3) (mSART-3) (Tumor-rejection antigen SART3)
          Length = 962

 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
 Frame = -2

Query: 583  MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQE 407
            ++   +F+  + ++CT EE++    + GTV  + ++T++ G+PKG AYVE+  E++A Q 
Sbjct: 798  LEKHKLFISGLPFSCTKEELEDICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQA 857

Query: 406  AVKLSESELHGRQIKVA---PKRTNVPGLKQPRGGRG 305
             +K+    +    IKVA   P +  VP   + R   G
Sbjct: 858  VMKMDGMTIRENVIKVAISNPPQRKVPEKPEVRTAPG 894



 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQH--FNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 407
           DS +VFV N+ Y+    EV+    F  CG V ++  +    G  +G+ YVEF E ++ Q+
Sbjct: 702 DSVTVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIRPIFSNRGDFRGYCYVEFGEEKSAQQ 761

Query: 406 AVKLSESELHGRQIKVAP 353
           A++L    + GR + V+P
Sbjct: 762 ALELDRKIVEGRPMFVSP 779
to top
>RU17_ARATH (Q42404) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 427

 Score = 53.9 bits (128), Expect = 4e-07
 Identities = 31/117 (26%), Positives = 67/117 (57%), Gaps = 3/117 (2%)
 Frame = -2

Query: 646 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 467
           K A++++  DPN   +   +    +++FV  ++Y  +  ++++ F S G + RV ++TD+
Sbjct: 116 KAAEDLKKYDPNNDPNATGDPY--KTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQ 173

Query: 466 F-GQPKGFAYVEFVEAEAIQEAVKLSESE-LHGRQIKVAPKR-TNVPGLKQPRGGRG 305
              +PKG+A++E++    ++ A K ++ + + GR++ V  +R   VP  +  R G G
Sbjct: 174 LTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPRRLGGG 230
to top
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1) (DAZ homolog)
           (SPGY-like-autosomal)
          Length = 295

 Score = 53.5 bits (127), Expect = 5e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
 Frame = -2

Query: 643 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 476
           +++E      +A TS+     + ++   +VFVG +D      E++  F   G+V  V I+
Sbjct: 13  ISREASTQSSSAATSQGYILPEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKII 72

Query: 475 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 353
           TD+ G  KG+ +V F     +Q+ V+ S+   HG+++K+ P
Sbjct: 73  TDRTGVSKGYGFVSFFNDVDVQKIVE-SQINFHGKKLKLGP 112
to top
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear|
           ribonucleoprotein 40) (HNRNP 40)
          Length = 344

 Score = 53.1 bits (126), Expect = 7e-07
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
 Frame = -2

Query: 649 AKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 470
           A  A    G   N + +  + + D R +FVG + +  T +E++ HF   G +  + + TD
Sbjct: 32  AGAAGSTNGSSDNQSAASGQRD-DDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTD 90

Query: 469 -KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 347
            + G+ +GFA++ F   EAI +     E  ++ +  KV PK+
Sbjct: 91  PQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSK--KVDPKK 130



 Score = 41.6 bits (96), Expect = 0.002
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVKLS 392
           +FVG +    + EE++ +F   G +  V +  DK   Q KGF ++ F   + + + +K  
Sbjct: 138 IFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKTP 197

Query: 391 ESELHGRQIKV-----APKRTNVPGLK-QPRGG 311
           + ++ G+++ V      P+   + G++  PRGG
Sbjct: 198 KQKIAGKEVDVKRATPKPENQMMGGMRGGPRGG 230
to top
>NOP12_SCHPO (O13741) Nucleolar protein 12|
          Length = 438

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 26/82 (31%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 398
           R VFVGN+ +    E + ++F  CG+++ V I+ D K    KGFAY++F +   + +A+ 
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329

Query: 397 LSESEL-HGRQIKVAPKRTNVP 335
           L+E ++  GR +++   ++  P
Sbjct: 330 LNEKKMPEGRTLRIMRAKSTKP 351
to top
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 296

 Score = 52.8 bits (125), Expect = 9e-07
 Identities = 29/101 (28%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
 Frame = -2

Query: 643 VAKEMQGGDPNATTSEA----KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL 476
           +++E      +A TS+     + ++   +VFVG +D      E++  F   G+V  V I+
Sbjct: 13  ISREANTQSSSAATSQGYVLPEGKIMPNTVFVGGIDVRMDETEIRGFFARYGSVKEVKII 72

Query: 475 TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 353
           TD+ G  KG+ +V F     +Q+ V+ S+   HG+++K+ P
Sbjct: 73  TDRTGVSKGYGFVSFFNDVDVQKIVE-SQINFHGKKLKLGP 112
to top
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted|
           in azoospermia-like 1)
          Length = 295

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 25/73 (34%), Positives = 42/73 (57%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E++  F   G+V  V I+TD+ G  KG+ +V F     +Q+ V+ S
Sbjct: 41  TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFFNDVDVQKIVE-S 99

Query: 391 ESELHGRQIKVAP 353
           +   HG+++K+ P
Sbjct: 100 QINFHGKKLKLGP 112
to top
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in|
           azoospermia-associated protein 1) (Proline-rich Vg1
           mRNA-binding protein)
          Length = 360

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 26/102 (25%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
 Frame = -2

Query: 661 REMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT 482
           R MQ + ++  +G       +E      S  +FVG + + C   E++++FN  G V  V 
Sbjct: 88  RGMQPERSRPREGWQQKEPRTENSR---SNKIFVGGIPHNCGETELKEYFNRFGVVTEVV 144

Query: 481 ILTDKFGQ-PKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
           ++ D   Q P+GF ++ F + +++ +AV +   ++ G++++V
Sbjct: 145 MIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEV 186
to top
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein|
           11)
          Length = 281

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
 Frame = -2

Query: 595 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 416
           A+EE D R+VFVGN++     E + + F   G + +VTI  D+ G+PK F +V F   E+
Sbjct: 4   AQEEAD-RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPES 62

Query: 415 IQEAVKLSES-ELHGRQIKV 359
           +  A+ L     L+GR I V
Sbjct: 63  VSYAIALLNGIRLYGRPINV 82
to top
>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 50.8 bits (120), Expect = 4e-06
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 401
           S +VFVGN+ +  T +++   F  CG +  + + TD + G+ KGF YV F + ++ ++ V
Sbjct: 365 SDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV 424

Query: 400 KLSESELHGRQIKVAPKRTNVPGLKQPRGGRG 305
           +++   + GR  ++        G    RGGRG
Sbjct: 425 EMNGHFIAGRPCRLDFSTPRTGG--GSRGGRG 454



 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
 Frame = -2

Query: 616 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAY 440
           P   T  +++  ++ +VFVG + +    + + Q F   GT+    ++ D + G+ KG+ Y
Sbjct: 249 PAKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGY 308

Query: 439 VEFVEAEAIQEAVKLS-ESELHGRQIKV---APKRTNVPGLKQPRGG 311
           V+F   EA + AV  +   E+ GR + +    P+  N     Q R G
Sbjct: 309 VDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG 355
to top
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor|
          Length = 324

 Score = 50.1 bits (118), Expect = 6e-06
 Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
 Frame = -2

Query: 598 EAKEEMDSRSV-----FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYV 437
           E +E ++S SV     +VGN+ ++ T  ++ + F   GTV  V I+ D+   + +GFA+V
Sbjct: 101 EKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFV 160

Query: 436 EFVEAEAIQEAVKLSE-SELHGRQIKVAPKRTNVPGLKQPRGG 311
                E  +EA++L + S++ GR +KV     N P  + PRGG
Sbjct: 161 TMGSVEEAKEAIRLFDGSQVGGRTVKV-----NFP--EVPRGG 196



 Score = 41.2 bits (95), Expect = 0.003
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHF-NSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           ++V N+ +A T + ++  F +  G ++   I     G+ +GF ++ F  AEA+  A+  +
Sbjct: 219 LYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278

Query: 394 SESELHGRQIKVAPKRTNVPGLKQP 320
           +E EL GR     P R NV G K P
Sbjct: 279 NEVELEGR-----PLRLNVAGQKAP 298
to top
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4|
          Length = 579

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 264

Query: 391 ESELHGRQIKVAP 353
           +   HG+++K+ P
Sbjct: 265 QIHFHGKKLKLGP 277



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99

Query: 391 ESELHGRQIKVAP 353
           +   HG+++K+ P
Sbjct: 100 QIHFHGKKLKLGP 112
to top
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           RSVFVGN+ Y  T E+++  F+  G+V    ++ D+  G+PKG+ + E+ + E    A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 397 -LSESELHGRQIKV 359
            L+  E  GR ++V
Sbjct: 76  NLNGREFSGRALRV 89
to top
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           RSVFVGN+ Y  T E+++  F+  G+V    ++ D+  G+PKG+ + E+ + E    A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 397 -LSESELHGRQIKV 359
            L+  E  GR ++V
Sbjct: 76  NLNGREFSGRALRV 89
to top
>RNP24_SCHPO (Q09100) RNA-binding protein rnp24|
          Length = 369

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
 Frame = -2

Query: 610 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT-DKFGQPKGFAYVE 434
           A+   +K+E  S  +FVGN+D+  T  ++++HF   G + RV ++T +  G+ KGF +V+
Sbjct: 217 ASIQSSKKEPSS-ILFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVD 275

Query: 433 FVEAEAIQEAVKLSES 386
           F + +   +A++L  +
Sbjct: 276 FPDIDTCMKAMELGHN 291



 Score = 38.9 bits (89), Expect = 0.014
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 20/122 (16%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPE--------------- 530
           L+ + AK  ++ +G       S+ + +     ++VGN+ +  T E               
Sbjct: 81  LKRLDAKYGRKEEG------ESQEESKRSPWGIWVGNLSFHTTKEILTDFFVRETSEMIK 134

Query: 529 EVQQHFNSCGTVNRVTIL-----TDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQI 365
           EV +      T  ++T +      +K  Q KGFAYV+F   +A++ A++ SE  L+GR I
Sbjct: 135 EVSEENIKPITTEQITRIHMPMSKEKRFQNKGFAYVDFATEDALKLALQCSEKALNGRNI 194

Query: 364 KV 359
            +
Sbjct: 195 LI 196
to top
>RBM7_HUMAN (Q9Y580) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 266

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 395
           R++FVGN++   T E + + F+  G V +V I  DK G+PK FA+V F    ++  A+ L
Sbjct: 10  RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69

Query: 394 SES-ELHGRQIKV 359
               +L+GR IK+
Sbjct: 70  LNGIKLYGRPIKI 82
to top
>DAZ2_HUMAN (Q13117) Deleted in azoospermia protein 2|
          Length = 558

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99

Query: 391 ESELHGRQIKVAP 353
           +   HG+++K+ P
Sbjct: 100 QIHFHGKKLKLGP 112
to top
>NUCL_XENLA (P20397) Nucleolin (Protein C23)|
          Length = 650

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 26/97 (26%), Positives = 50/97 (51%)
 Frame = -2

Query: 649 AKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD 470
           AK  KEM    P A  ++     +  S+F+GN++     +E++       +   +TI   
Sbjct: 207 AKRKKEMPKTIPEAKKTKTDTASEGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDI 266

Query: 469 KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
           + G  K F YV+F   E +++A+KL+  ++ G ++K+
Sbjct: 267 RIGNSKKFGYVDFSSEEEVEKALKLTGKKILGTEVKI 303



 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
 Frame = -2

Query: 586 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 407
           E DS+ + V N+ Y+ T + +++ F    ++     +    G+ KGFA++EF  AE  ++
Sbjct: 410 EGDSKVLVVNNLSYSATEDSLREVFEKATSIR----IPQNQGRAKGFAFIEFSSAEDAKD 465

Query: 406 AV-KLSESELHGRQIKVAPKRTNVPGLKQPRGGRG 305
           A+   + +E+ GR I++   +   P      GGRG
Sbjct: 466 AMDSCNNTEIEGRSIRLEFSQGGGP----QGGGRG 496



 Score = 37.7 bits (86), Expect = 0.031
 Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = -2

Query: 628 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKG 449
           QGG P         +  S+++FV  +    T E +++ F+  G+VN   +     G  KG
Sbjct: 486 QGGGPQGGGRGGSAQ--SKTLFVRGLSEDTTEETLKEAFD--GSVNARIVTDRDTGASKG 541

Query: 448 FAYVEFVEAEAIQEAVK-LSESELHGRQIKVAPKRTNVPGLKQPRGGRG 305
           F +V+F  AE  + A + + + E+ G ++ +   +   P     RGGRG
Sbjct: 542 FGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAK---PKGDSQRGGRG 587
to top
>DAZ3_HUMAN (Q9NR90) Deleted in azoospermia protein 3|
          Length = 486

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99

Query: 391 ESELHGRQIKVAP 353
           +   HG+++K+ P
Sbjct: 100 QIHFHGKKLKLGP 112
to top
>DAZ1_HUMAN (Q9NQZ3) Deleted in azoospermia protein 1|
          Length = 744

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 371 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 429

Query: 391 ESELHGRQIKVAP 353
           +   HG+++K+ P
Sbjct: 430 QIHFHGKKLKLGP 442



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 206 TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 264

Query: 391 ESELHGRQIKVAP 353
           +   HG+++K+ P
Sbjct: 265 QIHFHGKKLKLGP 277



 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 25/73 (34%), Positives = 41/73 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFVG +D      E+   F   G+V  V I+T++ G  KG+ +V FV    +Q+ V  S
Sbjct: 41  TVFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIVG-S 99

Query: 391 ESELHGRQIKVAP 353
           +   HG+++K+ P
Sbjct: 100 QIHFHGKKLKLGP 112
to top
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = -2

Query: 607 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 431
           T  +   +   RSVFVGN+ Y  T E+++  F+  G V    ++ D+  G+PKG+ + E+
Sbjct: 5   TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64

Query: 430 VEAEAIQEAVK-LSESELHGRQIKV 359
            + E    A++ L+  E  GR ++V
Sbjct: 65  QDQETALSAMRNLNGREFSGRALRV 89
to top
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = -2

Query: 607 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 431
           T  +   +   RSVFVGN+ Y  T E+++  F+  G V    ++ D+  G+PKG+ + E+
Sbjct: 5   TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64

Query: 430 VEAEAIQEAVK-LSESELHGRQIKV 359
            + E    A++ L+  E  GR ++V
Sbjct: 65  QDQETALSAMRNLNGREFSGRALRV 89
to top
>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 9/82 (10%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 401
           R VFVG +D+    E + + F+SCG V  V I+ D K    KGFAYV+F +  ++++A+ 
Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333

Query: 400 -------KLSESELHGRQIKVA 356
                  +LS+S  + R+++V+
Sbjct: 334 LNGKGINELSKSTTNKRKLRVS 355
to top
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
 Frame = -2

Query: 607 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 431
           T  +   +   RSVFVGN+ Y  T E+++  F+  G V    ++ D+  G+PKG+ + E+
Sbjct: 5   TVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEY 64

Query: 430 VEAEAIQEAVK-LSESELHGRQIKV 359
            + E    A++ L+  E  GR ++V
Sbjct: 65  QDQETALSAMRNLNGREFSGRALRV 89
to top
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1|
          Length = 833

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 27/102 (26%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
 Frame = -2

Query: 640 AKEMQGGDPNATTSEAKEEM--DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 467
           A  +Q  + N +  E   ++  +++ +F+ N+ Y+C  ++++  F   G + +V +  DK
Sbjct: 299 ASMLQKAENNVSEQERNIQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDK 358

Query: 466 -FGQPKGFAYVEFVEA-EAIQEAVKLSESELHGRQIKVAPKR 347
               PKGFAY++F +A +A++  ++L      GR + V P +
Sbjct: 359 KTNNPKGFAYIDFHDADDAVRAYLELDAKPFQGRLLHVLPAK 400



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 392
           + + N+ +  T ++VQ    + G +  V +        +GFA+ EFV A     A++ L 
Sbjct: 723 ILIKNLPFEATKKDVQSLLGAYGQLRSVRVPKKFDRSARGFAFAEFVTAREAANAMRALK 782

Query: 391 ESELHGRQI 365
            + L GR +
Sbjct: 783 NTHLLGRHL 791
to top
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2|
           (G-strand-binding protein 2) (RAP1 localization factor
           6)
          Length = 427

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 24/73 (32%), Positives = 42/73 (57%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 419
           +A +     S+FV N+ + CTPE++++ F + G V    I+T K G  +G   VEF + E
Sbjct: 114 DATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSK-GHHRGMGTVEFTKNE 172

Query: 418 AIQEAVKLSESEL 380
           ++Q+A+   +  L
Sbjct: 173 SVQDAISKFDGAL 185



 Score = 37.7 bits (86), Expect = 0.031
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = -2

Query: 592 KEEMDSR-SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF-VEAE 419
           +EE+D+   VF+ N+ Y+   + ++  F  CG V R  +  D  G  +GF  V +  E E
Sbjct: 212 REEIDNGFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTEDE 271

Query: 418 AIQEAVKLSESELHGRQIKVAPKRTN 341
            I+     +  E+ GR ++V   R N
Sbjct: 272 MIRAIDTFNGMEVEGRVLEVREGRFN 297
to top
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           RSVFVGN+ Y  T E+++  F+  G V    ++ D+  G+PKG+ + E+ + E    A++
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 397 -LSESELHGRQIKV 359
            L+  E  GR ++V
Sbjct: 76  NLNGREFSGRALRV 89
to top
>RBM7_BOVIN (Q3MHY8) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 262

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 395
           R++FVGN++   T E + + F+  G V +V I  DK G+PK FA+V F    ++  A+ L
Sbjct: 10  RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69

Query: 394 SES-ELHGRQIKV 359
               +L GR IK+
Sbjct: 70  LNGIKLFGRPIKI 82
to top
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4|
           (RNA-binding protein srp-2) (CeSC35)
          Length = 196

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKG 449
           GGD  A    A +     S+ + N+ Y  TP ++++ F   G +  V I  DK+  Q KG
Sbjct: 6   GGDRRA----APDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKG 61

Query: 448 FAYVEFVEAEAIQEAVKLSESEL-HGRQIKVAPKRTNVPGLKQPRGGRG 305
           F +V F E    + A+  ++ +L  GR+++V   + + P     RGGRG
Sbjct: 62  FGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRP--SDERGGRG 108
to top
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)|
          Length = 429

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 24/72 (33%), Positives = 40/72 (55%)
 Frame = -2

Query: 613 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 434
           ++T  E      S S+FVGN+ Y  TPE++ + F+  G V R  I+T + G  +G   VE
Sbjct: 123 DSTYEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR-GHHRGMGTVE 181

Query: 433 FVEAEAIQEAVK 398
           F  ++ +  A++
Sbjct: 182 FTNSDDVDRAIR 193



 Score = 31.2 bits (69), Expect = 2.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 431
           +R ++  N+ ++    ++   F + G VN   +  D  G P G A VE+
Sbjct: 350 NRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEY 398
to top
>NCBP2_YEAST (Q08920) Nuclear cap-binding protein subunit 2|
          Length = 208

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = -2

Query: 619 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFA 443
           +PN    E +E M S +++VGN+ +  + E++ + F+ CGT+ R+ +  D+F   P GF 
Sbjct: 32  NPNGL-QELRESMKSSTIYVGNLSFYTSEEQIYELFSKCGTIKRIIMGLDRFKFTPCGFC 90

Query: 442 YVEF-VEAEAIQEAVKLSESELHGRQIKV 359
           ++ +    EA+     LS+++L  + I +
Sbjct: 91  FIIYSCPDEALNALKYLSDTKLDEKTITI 119
to top
>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 449
           G D +       E    R +F+G +DY  T E ++ HF   G +  V ++ D +  + +G
Sbjct: 14  GHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRG 73

Query: 448 FAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 347
           F ++ +  +  I EA K    ++ GR ++  PKR
Sbjct: 74  FGFITYSHSSMIDEAQKSRPHKIDGRVVE--PKR 105



 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           + +FVG +      + ++ +F   G +  + I+ DK  G+ +GFA+VEF + + + + V 
Sbjct: 122 KKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVL 181

Query: 397 LSESELHGRQI---KVAPKRTNVPGLKQPRGGRG 305
             + +L+G+ +   K  PK+ +  G    RGG G
Sbjct: 182 QKQHQLNGKMVDVKKALPKQNDQQGGGGGRGGPG 215
to top
>NCBP2_ASHGO (Q754W7) Nuclear cap-binding protein subunit 2|
          Length = 218

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 29/103 (28%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFAYVEFVEA 422
           E ++ M S +++VGN+ +  + E++ + F+ CG++ ++ +  D+F   P GF ++ +   
Sbjct: 38  ELRKSMTSATIYVGNLSFYTSEEQLYELFSKCGSIEKIIMGLDRFKFTPCGFCFIIYQTP 97

Query: 421 EAIQEAVK-LSESELHGRQIKVAPKRTNVPGLKQPRG-GRGFN 299
           +    A+K LS+++L  R+I +       PG ++ R  GRG N
Sbjct: 98  QEALAALKYLSKTKLDDREITIDLD----PGFEEGRQFGRGKN 136
to top
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription|
           termination factor ctf1)
          Length = 363

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV-KL 395
           VFVGN+ Y  + +++ + FN  G V    ++ D + G  KG+ + EF ++E    AV KL
Sbjct: 9   VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68

Query: 394 SESELHGRQIKV 359
           + SEL  R+I+V
Sbjct: 69  NNSELGPRKIRV 80
to top
>NUCL_CHICK (P15771) Nucleolin (Protein C23)|
          Length = 694

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
 Frame = -2

Query: 586 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 407
           E +S+++ V N+ YA + E +Q+ F    ++    +  +  G+PKG+A+VEF  AE  +E
Sbjct: 457 ERESKTLIVNNLSYAASEETLQELFKKATSIK---MPQNNQGRPKGYAFVEFPTAEDAKE 513

Query: 406 AV-KLSESELHGRQIKV 359
           A+   + +E+ GR I++
Sbjct: 514 ALNSCNNTEIEGRAIRL 530



 Score = 40.4 bits (93), Expect = 0.005
 Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGD-PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR 488
           ++E   K  KEM     P A   + +    + S+FV N+      EE++           
Sbjct: 250 VKEAPGKRKKEMANKSAPEAKKKKTETPASAFSLFVKNLTPTKDYEELRTAIKEFFGKKN 309

Query: 487 VTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV--APKRTNVPGLKQPRG 314
           + +   + G  K F YV+F+ AE + +A++L+  +L G +IK+  A  + ++   K+ R 
Sbjct: 310 LQVSEVRIGSSKRFGYVDFLSAEDMDKALQLNGKKLMGLEIKLEKAKSKESLKENKKERD 369

Query: 313 GR 308
            R
Sbjct: 370 AR 371



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF---VEAEAIQE 407
           S+++FV  +    T E +++ F   G+++   +     G  KGF +V+F    +A+A +E
Sbjct: 552 SKTLFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKE 609

Query: 406 AVKLSESELHGRQI 365
           A  + + E+ G ++
Sbjct: 610 A--MEDGEIDGNKV 621
to top
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1|
          Length = 861

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
 Frame = -2

Query: 652 QAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILT 473
           QA  A+E+Q   P+   + AK +   R +F+ N+ Y+ T ++ ++ F+  G +  V +  
Sbjct: 300 QATPAEELQEEIPDEEQAIAKIQKTGR-LFLRNILYSSTEDDFKKLFSPYGELKEVHVAV 358

Query: 472 D-KFGQPKGFAYVEFVE-AEAIQEAVKLSESELHGRQIKV 359
           D + G  KGFAYV F +  EA+Q  ++L +    GR + +
Sbjct: 359 DTRTGNSKGFAYVLFAKPEEAVQAYIELDKQIFQGRLLHI 398



 Score = 39.7 bits (91), Expect = 0.008
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
 Frame = -2

Query: 646  KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 467
            K+  ++     NA + E K+  + + + V N+ +  T ++V + FNS G +  V +    
Sbjct: 715  KIQLKLSHRQGNAGSQEKKKAKNGK-IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKF 773

Query: 466  FGQPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKVAP 353
                +GFA+VEFV  +  + A+ +L    L GR++ + P
Sbjct: 774  DKSARGFAFVEFVLPKEAENAMDQLQGVHLLGRRLVMQP 812
to top
>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 23/77 (29%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK 398
           R +F+G +DY  T E ++QHF   G +  V ++ D K  + +GF ++ +  A  + +A  
Sbjct: 17  RKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQN 76

Query: 397 LSESELHGRQIKVAPKR 347
               ++ GR ++  PKR
Sbjct: 77  ARPHKVDGRVVE--PKR 91



 Score = 40.8 bits (94), Expect = 0.004
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVK 398
           + +FVG +       +++ +F   GTV    I+ DK  + K GFA+VEF + + + +   
Sbjct: 108 KKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICL 167

Query: 397 LSESELHGRQI--KVAPKRTNVPGLKQPRGGRG 305
               ++ G+ I  K A  + + PG  +  GGRG
Sbjct: 168 SRNHQIRGKHIDVKKALPKGDAPG-GRGGGGRG 199
to top
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 46.2 bits (108), Expect = 9e-05
 Identities = 27/94 (28%), Positives = 49/94 (52%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 419
           EA ++  S +++V N+D + + E++++ F+  GTV    ++ D  G  KG  +V F   E
Sbjct: 310 EAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPE 369

Query: 418 AIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPR 317
              EA+    S+L G+ I+  P    +   K+ R
Sbjct: 370 EATEAM----SQLSGKMIESKPLYVAIAQRKEDR 399



 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           ++F+ N+D +   + +   F+S G +    +  D  GQ KG+ +V++   E+ Q+A+ KL
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184

Query: 394 SESELHGRQIKVAP 353
           +   L+ +Q+ V P
Sbjct: 185 NGMLLNDKQVYVGP 198



 Score = 38.1 bits (87), Expect = 0.024
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
 Frame = -2

Query: 634 EMQGGDPNATTSEAKE-----------EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR 488
           ++QG  PN +T+               +  + S++VG++D+  T  ++   F   GTV  
Sbjct: 5   QLQGQTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVT 64

Query: 487 VTILTDKFGQPK-GFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 359
           V +  D   +   G+ YV F   +    A+ +L+   L+G+ I+V
Sbjct: 65  VRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRV 109
to top
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3)
          Length = 153

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAVKLS 392
           +FVG +++    + ++ HF+S G ++ V ++ D+  Q  +GF ++ F   E   +A++  
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67

Query: 391 ESE-LHGRQIKVAPKRTNVPGLKQPR-GGRG 305
             E L GRQI+V     +  G +    GGRG
Sbjct: 68  NGESLDGRQIRVDHAGKSARGSRGGAFGGRG 98
to top
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage|
           factor IB) (CFIB)
          Length = 534

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 32/129 (24%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEM-------DSRSVFVGNVDYACTPEEVQQHFNS 506
           L++  ++  +      P    ++ KEE        +S  +F+G +++  T + ++++F  
Sbjct: 122 LQQTMSQFQQPSSQSPPQQQVTQTKEERSKADLSKESCKMFIGGLNWDTTEDNLREYFGK 181

Query: 505 CGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGL 329
            GTV  + I+ D   G+ +GF ++ F +  ++ E VK ++  L G+ I   PKR  +P  
Sbjct: 182 YGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVID--PKRA-IPRD 237

Query: 328 KQPRGGRGF 302
           +Q + G+ F
Sbjct: 238 EQDKTGKIF 246



 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAI 413
           E+  +  +FVG +     P+E ++ F+  GT+    ++ DK  GQ +GF +V +  A+A+
Sbjct: 238 EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 297

Query: 412 QEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRGFN 299
               +    +   R+I++  KR     ++Q     G N
Sbjct: 298 DRVCQNKFIDFKDRKIEI--KRAEPRHMQQKSSNNGGN 333
to top
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 20/130 (15%)
 Frame = -2

Query: 661 REMQAKVAKEMQGGDPNATT---------SEAKEEM-DSRSVFVGNVDYACTPEEVQQHF 512
           RE QA  A+    G P +TT         +E +E++ DS  +FV N+ Y  + E++++ F
Sbjct: 365 REKQAPTAR----GPPKSTTPWQGRTLGENEEEEDLADSGRLFVRNLSYTSSEEDLEKLF 420

Query: 511 NSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP----- 353
           ++ G ++ +    D   + PKGFA+V F+  E A++   ++      GR + V P     
Sbjct: 421 SAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 480

Query: 352 ---KRTNVPG 332
              +  N PG
Sbjct: 481 EASQEANAPG 490



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
 Frame = -2

Query: 598  EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ----PKGFAYVEF 431
            E +E +   ++F+ N++++ T E ++  F+  G +   TI   K         GF +VE+
Sbjct: 714  EEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEY 773

Query: 430  VEAEAIQEAVK-LSESELHGRQIKV-APKRTNVPGLKQPR 317
             + E  Q+A+K L    + G +++V   +R   P L   R
Sbjct: 774  KKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTR 813
to top
>YNR5_YEAST (P53883) Hypothetical 45.7 kDa protein in RPS3-PSD1 intergenic|
           region
          Length = 403

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
 Frame = -2

Query: 661 REMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT 482
           R M  K ++   G           +   SR +FVGN+ +  T + +++HF  CG + ++ 
Sbjct: 210 RNMLIKDSENYSGRPDKDDLVAMSKNPPSRILFVGNLSFDVTDDLLRKHFQHCGDIVKIR 269

Query: 481 ILT-DKFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 359
           + T +  G+ KGFA+++F   E     +K  S  ++ GR +++
Sbjct: 270 MATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLRM 312



 Score = 34.7 bits (78), Expect = 0.26
 Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVN--------------- 491
           G +      + K++ +   V++GN+ +  T +++ + F +    N               
Sbjct: 108 GDESGEVVKKKKKDENKYGVWIGNLSFDTTKDDLVRFFIAKTKDNEDEKSRVTEQDITRL 167

Query: 490 ---RVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
              RV        + KGF Y+ F   E ++  ++LSES L+GR + +
Sbjct: 168 SMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNMLI 214
to top
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular|
           carcinoma protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAI 413
           EE D+R+VF   +     P ++++ F++ G V  V +++D+  +  KG AYVEFV+  ++
Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207

Query: 412 QEAVKLSESELHGRQIKV 359
             A+ L+   + G  I V
Sbjct: 208 PLAIGLTGQRVLGVPIIV 225
to top
>NUCL_MACFA (Q4R4J7) Nucleolin|
          Length = 710

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
 Frame = -2

Query: 664 LREMQAKVAKEM--QGGDPNATTS--EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGT 497
           ++E   K  KEM  Q   P A     E  E   + ++FVGN+++  +  E++   +    
Sbjct: 273 VKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 332

Query: 496 VNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            N + ++  + G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 333 KNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           +S+++ + N+ Y+ T E +Q+ F     +    +  ++ G+ KG+A++EF   E  +EA+
Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 540

Query: 400 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 314
              ++ E+ GR I++         L+ PRG
Sbjct: 541 NSCNKREIEGRAIRLE--------LQGPRG 562



 Score = 39.3 bits (90), Expect = 0.011
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
 Frame = -2

Query: 661 REMQAKVAK-EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVN 491
           RE++ +  + E+QG  G PNA +  +K      ++FV  +    T E +++ F+  G+V 
Sbjct: 546 REIEGRAIRLELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV- 596

Query: 490 RVTILTDK-FGQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLK 326
           R  I+TD+  G  KGF +V+F    +A+A +EA  + + E+ G ++ +   K     G  
Sbjct: 597 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFG 654

Query: 325 QPRGGRG 305
              GGRG
Sbjct: 655 GRGGGRG 661
to top
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)|
          Length = 709

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
 Frame = -2

Query: 664 LREMQAKVAKEM--QGGDPNATTS--EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGT 497
           ++E   K  KEM  Q   P A     E  E   + ++FVGN+++  +  E++   +    
Sbjct: 272 VKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 331

Query: 496 VNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            N + ++  + G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 332 KNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 377



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           +S+++ + N+ Y+ T E +Q+ F     +    +  ++ G+ KG+A++EF   E  +EA+
Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 539

Query: 400 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 314
              ++ E+ GR I++         L+ PRG
Sbjct: 540 NSCNKREIEGRAIRLE--------LQGPRG 561



 Score = 39.3 bits (90), Expect = 0.011
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
 Frame = -2

Query: 661 REMQAKVAK-EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVN 491
           RE++ +  + E+QG  G PNA +  +K      ++FV  +    T E +++ F+  G+V 
Sbjct: 545 REIEGRAIRLELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV- 595

Query: 490 RVTILTDK-FGQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLK 326
           R  I+TD+  G  KGF +V+F    +A+A +EA  + + E+ G ++ +   K     G  
Sbjct: 596 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFG 653

Query: 325 QPRGGRG 305
              GGRG
Sbjct: 654 GRGGGRG 660
to top
>NUCL_PONPY (Q5RF26) Nucleolin|
          Length = 711

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
 Frame = -2

Query: 664 LREMQAKVAKEM--QGGDPNATTS--EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGT 497
           ++E   K  KEM  Q   P A     E  E   + ++FVGN+++  +  E++   +    
Sbjct: 274 VKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELKTGISDVFA 333

Query: 496 VNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            N + ++  + G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 334 KNDLAVVDVRIGMTRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379



 Score = 40.0 bits (92), Expect = 0.006
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           +S+++ + N+ Y+ T E +Q+ F     +    +  ++ G+ KG+A++EF   E  +EA+
Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQNGKSKGYAFIEFASFEDAKEAL 541

Query: 400 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 314
              ++ E+ GR I++         L+ PRG
Sbjct: 542 NSCNKREIEGRAIRLE--------LQGPRG 563



 Score = 39.3 bits (90), Expect = 0.011
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
 Frame = -2

Query: 661 REMQAKVAK-EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVN 491
           RE++ +  + E+QG  G PNA +  +K      ++FV  +    T E +++ F+  G+V 
Sbjct: 547 REIEGRAIRLELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFD--GSV- 597

Query: 490 RVTILTDK-FGQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLK 326
           R  I+TD+  G  KGF +V+F    +A+A +EA  + + E+ G ++ +   K     G  
Sbjct: 598 RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFG 655

Query: 325 QPRGGRG 305
              GGRG
Sbjct: 656 GRGGGRG 662
to top
>RU17_HUMAN (P08621) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 437

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +   Q +V  E++  DP+   +   +    +++FV  V+Y  T  ++++ F   G + R+
Sbjct: 75  IERRQQEVETELKMWDPHNDPNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRI 132

Query: 484 TILTDK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR-TNVPGLKQPRG 314
            ++  K  G+P+G+A++E+     +  A K ++  ++ GR++ V  +R   V G +  R 
Sbjct: 133 HMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRL 192

Query: 313 GRG 305
           G G
Sbjct: 193 GGG 195
to top
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of|
           activating protein 1 and estrogen receptors)
           (Coactivator of AP-1 and ERs) (Transcription coactivator
           CAPER)
          Length = 530

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAI 413
           EE D+R+VF   +     P ++++ F++ G V  V +++D+  +  +G AYVEFV+  ++
Sbjct: 148 EERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSV 207

Query: 412 QEAVKLSESELHGRQIKV 359
           + A+ L+   + G  I V
Sbjct: 208 RLAIGLTGQRVLGVPIIV 225
to top
>RBM7_MOUSE (Q9CQT2) RNA-binding protein 7 (RNA-binding motif protein 7)|
          Length = 265

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 395
           R++FVGN++   T E + + F+  G V +V I  DK G+ K FA+V F    ++  A+ L
Sbjct: 10  RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKLKQFAFVNFKHEVSVPYAMNL 69

Query: 394 SES-ELHGRQIKV 359
               +L GR IK+
Sbjct: 70  LNGIKLFGRPIKI 82
to top
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
 Frame = -2

Query: 661 REMQAKVAKEMQGGDPNATTSEAKEEMDSRS-------VFVGNVDYACTPEEVQQHFNSC 503
           ++ Q    ++ Q  +    TS+  EE  S         +F+ N+ Y  T ++ ++ F+  
Sbjct: 294 KQQQQPDTEQQQPEETEVETSQESEEEKSLKKIRETGRLFLRNILYTATEDDFRKLFSPY 353

Query: 502 GTVNRVTILTD-KFGQPKGFAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 353
           G +  V I  D + GQ KGFAYV F  A+ A    V+L +    GR + + P
Sbjct: 354 GELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELDKQIFQGRLLHILP 405



 Score = 35.4 bits (80), Expect = 0.15
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = -2

Query: 622 GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA 443
           G      S  K++ +   + V N+ +  T ++V + F+S G +  V +        +GFA
Sbjct: 736 GTSTTNASSKKKKKNQGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFA 795

Query: 442 YVEFVEAEAIQEAV-KLSESELHGRQI 365
           +VEF+  +  + A+ +L    L GR++
Sbjct: 796 FVEFLLPKEAENAMDQLQGVHLLGRRL 822
to top
>RU17_MOUSE (Q62376) U1 small nuclear ribonucleoprotein 70 kDa (U1 SNRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +   Q +V  E++  DP+   +   +    +++FV  V+Y  T  ++++ F   G + R+
Sbjct: 75  IERRQQEVETELKMWDPHNDPNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRI 132

Query: 484 TILTDK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR-TNVPGLKQPRG 314
            ++  K  G+P+G+A++E+     +  A K ++  ++ GR++ V  +R   V G +  R 
Sbjct: 133 HMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRL 192

Query: 313 GRG 305
           G G
Sbjct: 193 GGG 195
to top
>RU17_XENTR (Q66II8) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 30/123 (24%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +   Q  V  E++  DP+   +   +    +++FV  V+Y  T  ++++ F   G + R+
Sbjct: 75  IERRQQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRI 132

Query: 484 TILTDK-FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR-TNVPGLKQPRG 314
            ++ +K  G+P+G+A++E+     +  A K ++  ++ GR++ V  +R   V G +  R 
Sbjct: 133 HMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRL 192

Query: 313 GRG 305
           G G
Sbjct: 193 GGG 195
to top
>RU17_XENLA (P09406) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70) (U1-70K)
          Length = 471

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 31/126 (24%), Positives = 64/126 (50%), Gaps = 6/126 (4%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +   Q  V  E++  DP+   +   +    +++FV  V+Y  T  ++++ F   G + R+
Sbjct: 75  IERRQQDVENELKIWDPHNDQNAQGDAF--KTLFVARVNYDTTESKLRREFEVYGPIKRI 132

Query: 484 TILTDK----FGQPKGFAYVEFVEAEAIQEAVKLSE-SELHGRQIKVAPKR-TNVPGLKQ 323
            I+ +K     G+P+G+A++E+     +  A K ++  ++ GR++ V  +R   V G + 
Sbjct: 133 HIVYNKGSEGSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRP 192

Query: 322 PRGGRG 305
            R G G
Sbjct: 193 RRLGGG 198
to top
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP|
           A1) (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 365

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV- 401
           + +FVG +      + ++++F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVI 164

Query: 400 -KLSESELHGRQIKVA---PKRTNVPGLKQPRGGRG 305
            K      H  Q++ A    +  +V G ++ RGG G
Sbjct: 165 QKYHTVNNHNSQVRKALSKQEMASVSGSQRERGGSG 200



 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
 Frame = -2

Query: 601 SEAKEEMDS-RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFV 428
           SEA  E +  R +F+G + +  T E +++HF   GT+    ++ D    + +GF +V ++
Sbjct: 4   SEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYL 63

Query: 427 EAEAIQEAVKLSESELHGRQIKVAPKR 347
             + +  A+     ++ GR ++  PKR
Sbjct: 64  STDEVDAAMTARPHKVDGRVVE--PKR 88
to top
>NOP12_CANAL (Q5AHI7) Nucleolar protein 12|
          Length = 454

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 30/97 (30%), Positives = 54/97 (55%), Gaps = 10/97 (10%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNS--CGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQ 410
           + R++FVGN+D+    E + ++FNS     V  V I+ D K    KGFA V+F +  ++ 
Sbjct: 263 NKRTIFVGNLDFEEKEETLWKYFNSKLDQDVESVRIIRDSKTNLGKGFALVQFKDTLSVN 322

Query: 409 EAVKLSESELH------GRQIKVAPKRTNV-PGLKQP 320
           +A+ L++  L       GR+++++  ++N  P L  P
Sbjct: 323 KALLLNDKPLETGTQKKGRKLRISRAKSNAKPSLMSP 359
to top
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +V++ N       E +++ F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 394 SESELHGRQIKVAPKRTNV 338
           +  EL+G+QI V   +  V
Sbjct: 252 NGKELNGKQIYVGRAQKKV 270



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 22/85 (25%), Positives = 43/85 (50%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
            +E++GR +   P    +   K+ R
Sbjct: 351 -TEMNGRIVATKPLYVALAQRKEER 374
to top
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +V++ N       E +++ F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 394 SESELHGRQIKVAPKRTNV 338
           +  EL+G+QI V   +  V
Sbjct: 252 NGKELNGKQIYVGRAQKKV 270



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 22/85 (25%), Positives = 43/85 (50%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
            +E++GR +   P    +   K+ R
Sbjct: 351 -TEMNGRIVATKPLYVALAQRKEER 374
to top
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 653

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +V++ N+D   T +E    F   G +  ++++ D+  +P+GF +V +   E  Q+AV +L
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDEL 321

Query: 394 SESELHGRQIKV 359
           ++ E  G+++ V
Sbjct: 322 NDKEYKGKKLYV 333



 Score = 41.2 bits (95), Expect = 0.003
 Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           ++F+ N+      E ++  F++ GT+    I+TD+ G+ KGF +V +   E   +AV ++
Sbjct: 365 NLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEM 424

Query: 394 SESELHGRQIKVA 356
           ++  L G+ + VA
Sbjct: 425 NQRMLAGKPLYVA 437



 Score = 37.4 bits (85), Expect = 0.041
 Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
 Frame = -2

Query: 586 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 407
           +M + +VF+ N+D A   + +   F++ G +    +  D+ G  KG+ +V F   E+   
Sbjct: 164 KMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANA 223

Query: 406 AVK------LSESELH-GRQIKVAPKRTNVPGLK 326
           A++      L++ +++ G  +    +++ V  LK
Sbjct: 224 AIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALK 257



 Score = 33.5 bits (75), Expect = 0.59
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAV 401
           S S++VG +D + T   + + FNS G V  + +  D   +   G+AYV F   E  ++A+
Sbjct: 79  SASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKAL 138

Query: 400 -KLSESELHGRQIKVAPKRTNVPGLKQPRGGRGF 302
            +L+ + + GR  ++   + + P L++   G  F
Sbjct: 139 DELNYTLIKGRPCRIMWSQRD-PSLRKMGTGNVF 171
to top
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast|
           precursor
          Length = 289

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-L 395
           V+VGN+ +      ++  F+  G V    ++ D+  G+ KGF +V +  ++ +Q A+K L
Sbjct: 206 VYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265

Query: 394 SESELHGRQIKVAPKRTNVP 335
             ++L GRQI+V+      P
Sbjct: 266 DGADLDGRQIRVSEAEARPP 285
to top
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein|
           PUB1 (ARS consensus-binding protein ACBP-60)
           (Poly(U)-binding protein) (Poly uridylate-binding
           protein)
          Length = 452

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
 Frame = -2

Query: 658 EMQAKVAKEMQG-GDPNATTSEA---KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVN 491
           E  ++ A++ QG  DP+   + A     E   R ++VGN+D A T + ++Q+F   G + 
Sbjct: 42  EGNSEQAEDNQGENDPSVVPANAITGGRETSDRVLYVGNLDKAITEDILKQYFQVGGPIA 101

Query: 490 RVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIK 362
            + I+ DK  +   +A+VE+ ++     A++     L+G+QI+
Sbjct: 102 NIKIMIDKNNKNVNYAFVEYHQSHDANIALQ----TLNGKQIE 140
to top
>RB87F_DROME (P48810) Heterogeneous nuclear ribonucleoprotein 87F (HRP36.1|
           protein) (Protein P11)
          Length = 385

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 422
           E  E    R +F+G +DY  T + ++ HF   G +  V ++ D K  + +GF ++ + ++
Sbjct: 16  EITEPEQLRKLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQS 75

Query: 421 EAIQEAVKLSESELHGRQIKVAPKR 347
             I  A      ++ GR ++  PKR
Sbjct: 76  YMIDNAQNARPHKIDGRTVE--PKR 98



 Score = 34.7 bits (78), Expect = 0.26
 Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
 Frame = -2

Query: 592 KEEMDS-------RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYV 437
           ++E+DS       + +FVG +      E ++++F   G +  V I++DK  G+ +GFA++
Sbjct: 102 RQEIDSPNAGATVKKLFVGGLRDDHDEECLREYFKDFGQIVSVNIVSDKDTGKKRGFAFI 161

Query: 436 EFVEAEAIQEAVKLSESELHGRQIKV 359
           EF + + + + +      +  + + V
Sbjct: 162 EFDDYDPVDKIILQKTHSIKNKTLDV 187
to top
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1|
          Length = 828

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 26/99 (26%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = -2

Query: 658 EMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 479
           ++Q K++   Q  +    T+E K+ +DS+ + + N+ +  T ++VQ+ F + G++  V +
Sbjct: 680 KLQLKISNRGQDEE----TTETKKAIDSK-ILIKNLPFEATKKDVQKLFGAFGSLKTVRV 734

Query: 478 LTDKFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 365
                 + +GFA+ E+V A+  + A+  L  + L GR++
Sbjct: 735 PKKFNSESRGFAFAEYVSAKEAEHAMSALQGTHLLGRRL 773



 Score = 39.7 bits (91), Expect = 0.008
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
 Frame = -2

Query: 637 KEMQGGDPNATTSEAKEEMDSRSV---------FVGNVDYACTPEEVQQHFNSCGTVNRV 485
           K+ +G  P A T   +E  +  ++         F+ N+ Y    E+ +Q F+  G +  V
Sbjct: 271 KKGKGNAPKAATPVDEEPSEDPTIVSIRKTGRLFLRNLLYTAKEEDFRQLFSQYGELEEV 330

Query: 484 TI-LTDKFGQPKGFAYVEFVEAEAIQEAVKLSESEL-HGRQIKVAP 353
            + +  K GQ KGFA+V+F + E    A +  + ++  GR + + P
Sbjct: 331 HLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKIFQGRLLHILP 376
to top
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)|
          Length = 305

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEA-- 404
           + +FVG +       ++ +HF+  GTV +  I+ DK  G+ +GF +V F   +A  +A  
Sbjct: 98  KKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAV 157

Query: 403 VKLSESELHGRQIKVAPKRTNV------PGLKQPRGGRG 305
           VK    + H  ++K A  + ++       G +  RGGRG
Sbjct: 158 VKFHPIQGHRVEVKKAVPKEDIYSGGGGGGSRSSRGGRG 196
to top
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 353

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
 Frame = -2

Query: 658 EMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 479
           E +  VA+E + G P A  +  K       +FVG +        ++ +F   G ++ + I
Sbjct: 92  EPKRAVARE-ESGKPGAHVTVKK-------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEI 143

Query: 478 LTDK-FGQPKGFAYVEFVEAEAIQEAV--KLSESELHGRQIKVAPKRTNVPGLKQPRGGR 308
           +TD+  G+ +GF +V F + + + + V  K      H  +++ A  R  +  ++  R GR
Sbjct: 144 ITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGR 203

Query: 307 GFN 299
           G N
Sbjct: 204 GGN 206
to top
>RNP4F_DROME (Q9W4D2) RNA-binding protein 4F|
          Length = 941

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -2

Query: 622 GDPNATTSEAK----EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           G  NA   E+       M+   +FV N+  AC+ EE+ + F+  GT+  V ++     Q 
Sbjct: 704 GPANAEAKESNFKYSPNMEINKIFVRNLHPACSKEELHELFSPFGTIKDVRLVHKLNKQF 763

Query: 454 KGFAYVEFVEAEAIQEAV 401
           KG AYVEF +    Q AV
Sbjct: 764 KGIAYVEFEKPGEAQRAV 781
to top
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA|
          Length = 101

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 5/93 (5%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV-- 401
           S++VGN+ Y  +  ++   F   G+V RV + TD+  G+ +GF +VE +EA+A + A   
Sbjct: 2   SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVE-LEADAEETAAIE 60

Query: 400 KLSESELHGRQIKV--APKRTNVPGLKQPRGGR 308
            L  +E  GR +KV  A  R N  G     GGR
Sbjct: 61  ALDGAEWMGRDLKVNKAKPRENRSGGGSFGGGR 93
to top
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /|
           hnRNP B1)
          Length = 341

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
 Frame = -2

Query: 658 EMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 479
           E +  VA+E + G P A  +  K       +FVG +        ++ +F   G ++ + I
Sbjct: 80  EPKRAVARE-ESGKPGAHVTVKK-------LFVGGIKEDTEEHHLRDYFEEYGKIDTIEI 131

Query: 478 LTDK-FGQPKGFAYVEFVEAEAIQEAV--KLSESELHGRQIKVAPKRTNVPGLKQPRGGR 308
           +TD+  G+ +GF +V F + + + + V  K      H  +++ A  R  +  ++  R GR
Sbjct: 132 ITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGR 191

Query: 307 GFN 299
           G N
Sbjct: 192 GGN 194
to top
>BOLL_MACFA (Q8WP23) Protein boule-like|
          Length = 283

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
 Frame = -2

Query: 613 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 434
           N T++     +    +FVG +D+     ++++ F+  G+V  V I+ D+ G  KG+ +V 
Sbjct: 20  NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVT 79

Query: 433 FVEAE----AIQEAVKLSESELHGRQIKVAP 353
           F   E     +QEA KL+  +   +++ + P
Sbjct: 80  FETQEDAQKILQEAEKLNYKD---KKLNIGP 107
to top
>BOLL_HUMAN (Q8N9W6) Protein boule-like|
          Length = 283

 Score = 43.9 bits (102), Expect = 4e-04
 Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
 Frame = -2

Query: 613 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVE 434
           N T++     +    +FVG +D+     ++++ F+  G+V  V I+ D+ G  KG+ +V 
Sbjct: 20  NPTSAPRYGTVIPNRIFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFVT 79

Query: 433 FVEAE----AIQEAVKLSESELHGRQIKVAP 353
           F   E     +QEA KL+  +   +++ + P
Sbjct: 80  FETQEDAQKILQEAEKLNYKD---KKLNIGP 107
to top
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1)
          Length = 371

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -2

Query: 592 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 416
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 415 IQEAVKLSESELHGRQIKVAPKR 347
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163

Query: 397 LSESELHGRQIKV 359
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176
to top
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3) (Testis-specific poly(A)-binding protein)
          Length = 631

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +V++ N       E ++  F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 394 SESELHGRQIKVAPKRTNV 338
           +  EL+G+QI V   +  V
Sbjct: 252 NGKELNGKQIYVGRAQKKV 270



 Score = 35.0 bits (79), Expect = 0.20
 Identities = 22/85 (25%), Positives = 43/85 (50%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
            +E++GR +   P    +   K+ R
Sbjct: 351 -TEMNGRIVATKPLYVALAQRKEER 374



 Score = 32.7 bits (73), Expect = 1.0
 Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           ++FV N+D +   + +    ++ G +    ++ D+ G  KG+ +V F   EA + A+ K+
Sbjct: 100 NIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKKM 158

Query: 394 SESELHGRQIKV 359
           +   L+GR++ V
Sbjct: 159 NGMLLNGRKVFV 170
to top
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +V++ N       E ++  F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 394 SESELHGRQIKVAPKRTNV 338
           +  EL+G+QI V   +  V
Sbjct: 252 NGKELNGKQIYVGRAQKKV 270



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 22/85 (25%), Positives = 43/85 (50%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
            +E++GR +   P    +   K+ R
Sbjct: 351 -TEMNGRIVATKPLYVALAQRKEER 374
to top
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein|
           1) (PABP 1)
          Length = 636

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +V++ N       E ++  F   G    V ++TD+ G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 394 SESELHGRQIKVAPKRTNV 338
           +  EL+G+QI V   +  V
Sbjct: 252 NGKELNGKQIYVGRAQKKV 270



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 22/85 (25%), Positives = 43/85 (50%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +++V N+D     E +++ F+  GT+    ++ +  G+ KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAV--- 350

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
            +E++GR +   P    +   K+ R
Sbjct: 351 -TEMNGRIVATKPLYVALAQRKEER 374
to top
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (HDP)
          Length = 319

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -2

Query: 592 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 416
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 415 IQEAVKLSESELHGRQIKVAPKR 347
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163

Query: 397 LSESELHGRQIKV 359
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176
to top
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed)
          Length = 319

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -2

Query: 592 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 416
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 415 IQEAVKLSESELHGRQIKVAPKR 347
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163

Query: 397 LSESELHGRQIKV 359
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176
to top
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1)
          Length = 319

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -2

Query: 592 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 416
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK 66

Query: 415 IQEAVKLSESELHGRQIKVAPKR 347
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 35.4 bits (80), Expect = 0.15
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F +  ++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVI 163

Query: 397 LSESELHGRQIKV 359
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176
to top
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1|
           (Helix-destabilizing protein) (Single-strand RNA-binding
           protein) (hnRNP core protein A1) (Unwinding protein 1)
           (UP1) (Fragment)
          Length = 195

 Score = 43.5 bits (101), Expect = 6e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -2

Query: 592 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEA 416
           KE    R +F+G + +  T E ++ HF   GT+    ++ D    + +GF +V +   E 
Sbjct: 7   KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE 66

Query: 415 IQEAVKLSESELHGRQIKVAPKR 347
           +  A+     ++ GR ++  PKR
Sbjct: 67  VDAAMNARPHKVDGRVVE--PKR 87



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 17/73 (23%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK 398
           + +FVG +        ++ +F   G +  + I+TD+  G+ +GFA+V F + +++ + V 
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 163

Query: 397 LSESELHGRQIKV 359
                ++G   +V
Sbjct: 164 QKYHTVNGHNCEV 176
to top
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein cp29)
          Length = 342

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV-KL 395
           ++VGN+ +      ++  FN  G V    ++ D+  G+ KGF +V    ++ +Q+A+  L
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSL 318

Query: 394 SESELHGRQIKVAPKRTNVP 335
           + ++L GRQI+V+      P
Sbjct: 319 NGADLDGRQIRVSEAEARPP 338
to top
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein|
           3) (RNPL)
          Length = 157

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAVKLS 392
           +FVG +++    + ++ HF+S G ++ V ++ D+  Q  +GF ++ F   E    A++  
Sbjct: 8   LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67

Query: 391 ESE-LHGRQIKV 359
             E L GRQI+V
Sbjct: 68  NGESLDGRQIRV 79
to top
>DAZL_BRARE (Q9YGW7) Deleted in azoospermia-like (DAZ-like protein) (zDazl)|
          Length = 229

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 25/78 (32%), Positives = 41/78 (52%)
 Frame = -2

Query: 586 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 407
           +M   ++FVG +D      E+++ F   G+V  V I+T + G  KG+ +V F E   IQ 
Sbjct: 43  KMTPNTLFVGGIDMKVDENEIREFFAKYGSVKEVKIITYRGGICKGYGFVYFSEDVDIQT 102

Query: 406 AVKLSESELHGRQIKVAP 353
            V    S   G+++K+ P
Sbjct: 103 IVDQPIS-FKGKKLKLGP 119
to top
>BOLL_MOUSE (Q924M5) Protein boule-like|
          Length = 281

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE----AIQEAV 401
           +FVG +D+     ++++ F+  G+V  V I+ D+ G  KG+ ++ F   E     +QEA 
Sbjct: 35  IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRAGVSKGYGFITFETQEDAQKILQEAE 94

Query: 400 KLSESELHGRQIKVAP 353
           KL+  +   +++ + P
Sbjct: 95  KLNYKD---KKLNIGP 107
to top
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 43.1 bits (100), Expect = 7e-04
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
 Frame = -2

Query: 634 EMQGGDPNATTSE--AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KF 464
           +    +P  T  E  A++  ++  +F+ N+ Y  + E+ +  F+  G +  V I  D + 
Sbjct: 288 QQSDNEPELTPEEQIAQKIEETGRLFIRNISYEASEEDFRSLFSQYGALEEVHIAIDTRT 347

Query: 463 GQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKVAP 353
           G+ KGF YV+F++ E    A + L +    GR + + P
Sbjct: 348 GKSKGFLYVQFLKKEDATRAYRSLDKQIFQGRLLHILP 385



 Score = 33.1 bits (74), Expect = 0.77
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = -2

Query: 538 TPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           T E++++ F+  G V  V ++  + G+ + FA++ +  A+A + AVK
Sbjct: 14  TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVK 60



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
 Frame = -2

Query: 658 EMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 479
           ++Q K++ +   G    + S  K+   S  + + N+ +  T +++ + F + G +  V +
Sbjct: 692 KLQLKLSHKQGTG---TSASSIKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRV 748

Query: 478 LTDKFGQP-KGFAYVEF-VEAEAIQEAVKLSESELHGRQI 365
              KF Q  +GFA+VEF +  EA     +L    L GR++
Sbjct: 749 -PKKFDQSARGFAFVEFNLMKEAETAMSQLEGVHLLGRRL 787
to top
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)|
          Length = 261

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 398
           S+F+ NV  A  PE++++ F   G +  V I  D + + P+GFAYV+F +    ++A+  
Sbjct: 11  SLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYN 70

Query: 397 LSESELHGRQIKV 359
           L+   + GRQI++
Sbjct: 71  LNRKWVCGRQIEI 83
to top
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1|
          Length = 838

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAE-AIQEAVKL 395
           +F+ N+ Y  T E+ +Q F+  G +  V +  D + GQ KGFAYV F + E A    ++L
Sbjct: 303 LFLRNILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIEL 362

Query: 394 SESELHGRQIKVAP 353
            +    GR + + P
Sbjct: 363 DKQIFQGRLLHILP 376



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = -2

Query: 604 TSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF-V 428
           TS+  ++  S  + V N+ +  T ++V + F+S G +  V +        +GFA+VEF +
Sbjct: 702 TSKGSKKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVPKKFDKSARGFAFVEFLL 761

Query: 427 EAEAIQEAVKLSESELHGRQI 365
            +EA     +L    L GR++
Sbjct: 762 PSEAENAMDQLQGVHLLGRRL 782
to top
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1|
           (hnRNP A2(A))
          Length = 346

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV- 401
           + +FVG +        ++++F   G ++ + I+TDK  G+ +GFA+V F + + + + V 
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVL 159

Query: 400 -KLSESELHGRQIKVAPKRTNVPGLKQPRGGRGFN 299
            K      H  +++ A  +  +  ++  R  RG N
Sbjct: 160 QKYHTINGHNAEVRKALSKQEMQDVQNTRNNRGGN 194



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = -2

Query: 592 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG-QPKGFAYVEFVEAEA 416
           +E+   R +F+G + +  T E ++ ++   GT+    ++ D    + +GF +V F     
Sbjct: 3   REKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNE 62

Query: 415 IQEAVKLSESELHGRQIKVAPKR 347
           +  A+      + GR ++  PKR
Sbjct: 63  VDAAMATRPHTIDGRVVE--PKR 83
to top
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1|
          Length = 827

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = -2

Query: 658 EMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 479
           E  A+ ++EM     +   S       +  +F+ N+ Y  T ++V++HF   G +  V +
Sbjct: 280 EHPAEDSREMAATSTHDPESAISLIEKTSRLFLRNLSYTVTEDDVREHFAKFGILVEVHV 339

Query: 478 LTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP---KRTN 341
             D  G  KGFA + + +  +   A +   +   GR + + P   KR N
Sbjct: 340 PLDSKGHSKGFAMIRYEKPASALAAFQTDGTVFQGRIVHILPAAAKREN 388
to top
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)|
          Length = 706

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/81 (25%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           +S+++ + N+ Y+ T E +++ F     +    +  +  G+PKG+A++EF   E  +EA+
Sbjct: 484 ESKTLVLSNLSYSATKETLEEVFEKATFIK---VPQNPHGKPKGYAFIEFASFEDAKEAL 540

Query: 400 -KLSESELHGRQIKVAPKRTN 341
              ++ E+ GR I++  + +N
Sbjct: 541 NSCNKMEIEGRTIRLELQGSN 561



 Score = 38.9 bits (89), Expect = 0.014
 Identities = 20/96 (20%), Positives = 50/96 (52%)
 Frame = -2

Query: 646 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 467
           ++ K+ +  +      E  E     ++F+GN++   +  E++   +     N + ++  +
Sbjct: 284 EMTKQKEAPEAKKQKVEGSEPTTPFNLFIGNLNPNKSVNELKFAISELFAKNDLAVVDVR 343

Query: 466 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 344 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 379



 Score = 33.5 bits (75), Expect = 0.59
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF---VEAEAIQ 410
           S+++FV  +    T E +++ F   G+V R  I+TD+  G  KGF +V+F    +A+A +
Sbjct: 567 SKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAK 623

Query: 409 EAVKLSESELHGRQIKVA-PKRTNVPGLKQPRGGRG 305
           EA  + + E+ G ++ +   K     G     GGRG
Sbjct: 624 EA--MEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRG 657
to top
>SXL_MUSDO (O17310) Sex-lethal homolog|
          Length = 324

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +R  + KV+    GG          E +   +++V N+    T +E+++ F   G + + 
Sbjct: 168 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQK 217

Query: 484 TILTDKF-GQPKGFAYVEFVEAEAIQEAV 401
            IL DK  G+P+G A+V F + E  QEA+
Sbjct: 218 NILRDKLTGRPRGVAFVRFNKREEAQEAI 246



 Score = 37.0 bits (84), Expect = 0.053
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKG 449
           GGD     ++A   ++  ++ V  +    T  E+   F +CG +N   I+ D K G   G
Sbjct: 88  GGDGGGGDTQA---VNGTNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFG 144

Query: 448 FAYVEFVEAEAIQEAVK-LSESELHGRQIKVAPKRTNVPGLK 326
           +A+V+F      Q A+K ++   +  +++KV+  R     +K
Sbjct: 145 YAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIK 186
to top
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein
           F41)
          Length = 486

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -2

Query: 601 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 422
           SE    ++ R +F+G +   CT  +++  F+S G +    IL    G  +G A+V F   
Sbjct: 99  SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 158

Query: 421 EAIQEAVK 398
              Q A+K
Sbjct: 159 TMAQTAIK 166
to top
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)|
           (RNA-binding protein BRUNOL-2) (Deadenylation factor
           CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding
           protein) (EDEN-BP)
          Length = 486

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = -2

Query: 601 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA 422
           SE    ++ R +F+G +   CT  +++  F+S G +    IL    G  +G A+V F   
Sbjct: 99  SEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTR 158

Query: 421 EAIQEAVK 398
              Q A+K
Sbjct: 159 AMAQTAIK 166
to top
>SXL_CHRRU (O97018) Sex-lethal homolog|
          Length = 307

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +R  + KV+    GG          E +   +++V N+    T +E+++ F   G + + 
Sbjct: 151 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQK 200

Query: 484 TILTDKF-GQPKGFAYVEFVEAEAIQEAV 401
            IL DK  G+P+G A+V F + E  QEA+
Sbjct: 201 NILRDKLTGKPRGVAFVRFNKREEAQEAI 229



 Score = 35.4 bits (80), Expect = 0.15
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
 Frame = -2

Query: 538 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 365
           T  E+   F +CG +N   I+ D K G   G+A+V+F      Q A+K L+   +  +++
Sbjct: 97  TDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRL 156

Query: 364 KVAPKRTNVPGLK 326
           KV+  R     +K
Sbjct: 157 KVSYARPGGESIK 169
to top
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)|
          Length = 273

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
 Frame = -2

Query: 637 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-G 461
           ++++ GD      E +       +FVGN+ ++     + + F   G V  V ++ DK  G
Sbjct: 68  EDVEDGDDGV--EEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTG 125

Query: 460 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV-----APKRTNVPGLKQPRGGRGFN 299
           + +GF +V     E ++ A  + +  EL GR ++V       KR N       RGG  F+
Sbjct: 126 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFD 185
to top
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 668

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +VF+ N+D +   + + + F+S GT+    +  D  G+ KG+ +V+F + E  Q A+ KL
Sbjct: 133 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKL 192

Query: 394 SESELHGRQIKV 359
           +   L+ +Q+ V
Sbjct: 193 NGMLLNDKQVFV 204



 Score = 37.0 bits (84), Expect = 0.053
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
 Frame = -2

Query: 610 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEF 431
           A  +EA +   + S++VG++D +     +   FN    V+ + +  D   +  G+AYV F
Sbjct: 33  AAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNF 92

Query: 430 VEAEAIQEAVK-LSESELHGRQIKV 359
              E    A++ L+ + +  R I++
Sbjct: 93  ANPEDASRAMESLNYAPIRDRPIRI 117



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 16/74 (21%), Positives = 39/74 (52%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 410
           E++   ++++ N+D +   E++++ F+  G V    ++ +  G  +GF +V +   E   
Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEAL 382

Query: 409 EAVKLSESELHGRQ 368
            A+K    ++ GR+
Sbjct: 383 LAMKEMNGKMIGRK 396
to top
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)|
          Length = 633

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 449
           GG P  +     +      VFVG +      +E+   F   G +  + ++ D   GQ +G
Sbjct: 148 GGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRG 207

Query: 448 FAYVEFVEAEAIQEAVKLSES 386
           +A++ F   EA QEAVKL +S
Sbjct: 208 YAFITFCGKEAAQEAVKLCDS 228
to top
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = -2

Query: 619 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 440
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 365
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
to top
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = -2

Query: 619 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 440
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 365
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
to top
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = -2

Query: 619 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 440
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 365
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
to top
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = -2

Query: 619 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 440
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 365
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
to top
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = -2

Query: 619 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 440
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 365
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
to top
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein|
           5) (PABP 5)
          Length = 382

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/85 (28%), Positives = 41/85 (48%)
 Frame = -2

Query: 619 DPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAY 440
           +  A     ++     +VFV N+      E++++ F   G    V ++ D  G+ KGF +
Sbjct: 184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGF 243

Query: 439 VEFVEAEAIQEAVKLSESELHGRQI 365
           V +   EA Q+AV     +LHG+ I
Sbjct: 244 VRYETHEAAQKAV----LDLHGKSI 264
to top
>IF4H_MOUSE (Q9WUK2) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein
           homolog)
          Length = 247

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
 Frame = -2

Query: 622 GDPNATTSEAKEEMDSR---SVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL----TDKF 464
           G      S +++E+ +    + +VGN+ +     ++   F    ++  V ++    TDKF
Sbjct: 22  GSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKF 80

Query: 463 GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRGF 302
              KGF YVEF E ++++EA+    + L  R ++V        G KQ +GG GF
Sbjct: 81  ---KGFCYVEFDEVDSLKEALTYDGALLGDRSLRV----DIAEGRKQDKGGFGF 127
to top
>IF4H_HUMAN (Q15056) Eukaryotic translation initiation factor 4H (eIF-4H)|
           (Williams-Beuren syndrome chromosome region 1 protein)
          Length = 247

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
 Frame = -2

Query: 622 GDPNATTSEAKEEMDSR---SVFVGNVDYACTPEEVQQHFNSCGTVNRVTIL----TDKF 464
           G      S +++E+ +    + +VGN+ +     ++   F    ++  V ++    TDKF
Sbjct: 22  GSAGGHGSRSQKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDL-SIRSVRLVRDKDTDKF 80

Query: 463 GQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRGF 302
              KGF YVEF E ++++EA+    + L  R ++V        G KQ +GG GF
Sbjct: 81  ---KGFCYVEFDEVDSLKEALTYDGALLGDRSLRV----DIAEGRKQDKGGFGF 127
to top
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1|
          Length = 887

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
 Frame = -2

Query: 655 MQAKVAKEMQGGDPNATTSEAKEEMDSRS--VFVGNVDYACTPEEVQQHFNSCGTVNRVT 482
           +  K  ++ +   P  T  E   E  +++  +F+ N+ Y    E+ ++ F+  G +  V 
Sbjct: 316 LDTKKEEQPERAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVH 375

Query: 481 ILTD-KFGQPKGFAYVEFVEAE-AIQEAVKLSESELHGRQIKVAP 353
           +  D + GQ KGFAYV F +++ A+   V+L +    GR + + P
Sbjct: 376 VALDTRTGQSKGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHILP 420



 Score = 36.6 bits (83), Expect = 0.070
 Identities = 25/95 (26%), Positives = 45/95 (47%)
 Frame = -2

Query: 658  EMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTI 479
            ++Q K++        N  T   K+   S  + V N+ +  T ++V + FNS G +  V +
Sbjct: 738  KIQLKLSHRQASQSGNTKTKSNKK---SGKIIVKNLPFEATRKDVFELFNSFGQLKSVRV 794

Query: 478  LTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHG 374
                    +GFA+VEF+  +  + A+     +LHG
Sbjct: 795  PKKFDKSARGFAFVEFLLPKEAENAM----DQLHG 825
to top
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)|
          Length = 362

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 401
           ++ +FVG +    T E+V+Q+F   G V+   ++ DK   + +GF +V F   + +++  
Sbjct: 108 TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC 167

Query: 400 KLSESELHGRQI---KVAPKRTNVP 335
           ++   E++ + +   K  PK    P
Sbjct: 168 EIHFHEINNKMVECKKAQPKEVMSP 192
to top
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2|
          Length = 168

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
 Frame = -2

Query: 565 FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-LS 392
           FVG + +A   E ++Q F + G V    ++TD+  G+ +GF +V F   +++ +A++ ++
Sbjct: 11  FVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMN 70

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPRGGRG 305
             EL GR I V           Q RGG G
Sbjct: 71  GKELDGRNITV--------NQAQSRGGGG 91
to top
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)|
          Length = 685

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEA 422
           +A+ + +  SVFV NV Y  T E +  HF+  G+V     + DK  G  KG A+V F + 
Sbjct: 282 KAQNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQ 341

Query: 421 EAIQEAVK 398
               E +K
Sbjct: 342 YTYNECIK 349
to top
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 422
           + KE    R +F+G + +  T + +++HF   GT+    ++ D +  + +GF +V +   
Sbjct: 27  DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86

Query: 421 EAIQEAVKLSESELHGRQIKVAPKR 347
           E +  A+     ++ GR ++  PKR
Sbjct: 87  EEVDAAMCARPHKVDGRVVE--PKR 109
to top
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 379

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 422
           + KE    R +F+G + +  T + +++HF   GT+    ++ D +  + +GF +V +   
Sbjct: 27  DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86

Query: 421 EAIQEAVKLSESELHGRQIKVAPKR 347
           E +  A+     ++ GR ++  PKR
Sbjct: 87  EEVDAAMCARPHKVDGRVVE--PKR 109
to top
>MYEF2_HUMAN (Q9P2K5) Myelin expression factor 2 (MyEF-2) (MST156)|
          Length = 600

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA-EAIQEAVKL 395
           ++FV N+D+    +++++ F+  GTV R  I  DK G+ +G   V F +A EA+Q     
Sbjct: 234 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 293

Query: 394 SESELHGRQIKVAPKRTNVP 335
           +   L  R + V     +VP
Sbjct: 294 NGQFLFDRPMHVKMDDKSVP 313



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
 Frame = -2

Query: 601 SEAKEEMDSRS--VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV 428
           S  +E + S+   +FV N+ +  T +++++ F+ CG V    I  +  G+ KG   V F 
Sbjct: 512 SGMRERIGSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFD 570

Query: 427 EAEAIQEAVKLSES-ELHGRQIKV 359
             E+ ++A ++    ++ GR+I V
Sbjct: 571 SPESAEKACRIMNGIKISGREIDV 594
to top
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)|
          Length = 591

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEA-EAIQEAVKL 395
           ++FV N+D+    +++++ F+  GTV R  I  DK G+ +G   V F +A EA+Q     
Sbjct: 225 TIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMF 284

Query: 394 SESELHGRQIKVAPKRTNVP 335
           +   L  R + V     +VP
Sbjct: 285 NGQFLFDRPMHVKMDDKSVP 304



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 389
           +FV N+ +  T +++++ F+ CG V    I  +  G+ KG   V F  AE+ ++A ++  
Sbjct: 516 IFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFESAESAEKACRIMN 574

Query: 388 S-ELHGRQIKV 359
             ++ GR+I V
Sbjct: 575 GIKISGREIDV 585
to top
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1|
          Length = 819

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 401
           S  +FV N+ Y     E++  F+  G +  + +  D +F   KGFAYV++ + +A  EA 
Sbjct: 294 SARLFVRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAY 353

Query: 400 KLSESEL-HGRQIKVAP 353
           +  + ++  GR + + P
Sbjct: 354 RNLDGKIFQGRLLHILP 370



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = -2

Query: 637 KEMQGGDPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG 461
           K M   +       AK+    R+ + + N+ +  T ++V+  F + G +  V +      
Sbjct: 675 KGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDR 734

Query: 460 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 365
             +GF + +FV A   + A+  L  + L GR++
Sbjct: 735 SARGFGFADFVSAREAENAMDALKNTHLLGRRL 767
to top
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1|
          Length = 825

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 12/114 (10%)
 Frame = -2

Query: 658 EMQAKVAKEMQGGDPNATTSEAKEE----------MDSRSVFVGNVDYACTPEEVQQHFN 509
           E  +K   +    D  A  S  +EE          + SR +FV N+ Y  +  +++  F+
Sbjct: 264 ETVSKAGAQHSDDDKAAVESSVEEEEVDTNIEHIRLSSR-LFVRNLPYDASESDLEPVFS 322

Query: 508 SCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKVAP 353
             G +  + +  D +    KGFAYV+++E +A  +A K L      GR + + P
Sbjct: 323 KFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDGKHFQGRLMHILP 376



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
 Frame = -2

Query: 637 KEMQGGDPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFG 461
           K M   +       AK+    R+ + + N+ +  T ++V+  F + G +  V +      
Sbjct: 680 KAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVPKKFDR 739

Query: 460 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQI 365
             +GF + +FV A   + A+  L  + L GR++
Sbjct: 740 SARGFGFADFVSAREAENAMDALKNTHLLGRRL 772
to top
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)|
          Length = 378

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 422
           + KE    R +F+G + +  T + +++HF   GT+    ++ D +  + +GF +V +   
Sbjct: 27  DPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCV 86

Query: 421 EAIQEAVKLSESELHGRQIKVAPKR 347
           E +  A+     ++ GR ++  PKR
Sbjct: 87  EEVDAAMCARPHKVDGRVVE--PKR 109
to top
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear|
           (Poly(A)-binding protein) (PABP) (ARS consensus-binding
           protein ACBP-67) (Polyadenylate tail-binding protein)
          Length = 576

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV- 401
           S ++F+ N+      + +   F+  G +    I TD+ G+ KGF +V F E  A +EA+ 
Sbjct: 124 SGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAID 183

Query: 400 KLSESELHGRQIKVAP 353
            L+   L+G++I VAP
Sbjct: 184 ALNGMLLNGQEIYVAP 199



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           ++FV N+D +   E++++ F   GT+    ++  + G+ KGF +V F   E   +A+ + 
Sbjct: 322 NLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEK 381

Query: 394 SESELHGRQIKVA 356
           ++  + G+ + VA
Sbjct: 382 NQQIVAGKPLYVA 394
to top
>DAZ1_CAEEL (Q20870) DAZ protein 1|
          Length = 499

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 21/76 (27%), Positives = 37/76 (48%)
 Frame = -2

Query: 586 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQE 407
           E+    +FVG    + T  E+++HF     V  V ++    GQ KG+ ++ F   +  +E
Sbjct: 63  ELIPNRIFVGGFPTSTTETELREHFEKFFAVKDVKMVKSLDGQSKGYGFITFETEDQAEE 122

Query: 406 AVKLSESELHGRQIKV 359
             KL+  +L  R  K+
Sbjct: 123 IRKLTPKQLEFRSRKL 138
to top
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)|
          Length = 414

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
 Frame = -2

Query: 664 LREMQAK------VAKEMQGGDPNATTSEAKEEMDSRS-----VFVGNVDYACTPEEVQQ 518
           ++EMQ K      +  +M    P      AK+  D+ S     +F+GN+ +    + + +
Sbjct: 226 IQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFE 285

Query: 517 HFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVKLSESE-LHGRQIKV---AP 353
            F   G V  V I T  +  QPKGF YV+F   E  ++A+   + E +  R +++   +P
Sbjct: 286 LFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP 345

Query: 352 KRTNVPGLKQPR--GGRG 305
           +  N  G    R  GGRG
Sbjct: 346 RPNNDGGRGGSRGFGGRG 363
to top
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein|
          Length = 157

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
 Frame = -2

Query: 565 FVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVK-LS 392
           FVG + +A + E ++  F S G +    ++TD+  G+ +GF +V F    ++ +A++ ++
Sbjct: 11  FVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMN 70

Query: 391 ESELHGRQIKV--APKRTNVPGLKQPRGGRG 305
             EL GR I V  A  R    G     GGRG
Sbjct: 71  GKELDGRNITVNQAQSRGGGGGGGGYGGGRG 101
to top
>SXL_MEGSC (O01671) Sex-lethal homolog|
          Length = 321

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 413
           E++   +++V N+  + T E+++  F   G + +  IL DK  G P+G A++ F + E  
Sbjct: 159 EQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEA 218

Query: 412 QEAV 401
           QEA+
Sbjct: 219 QEAI 222
to top
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 28/102 (27%), Positives = 49/102 (48%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           LR ++A    E++ G            +++  +FVGNV  ACT +E++  F   G V   
Sbjct: 49  LRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIEC 108

Query: 484 TILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            ++ D       F ++E  EA+A     +L+  E+ G++I V
Sbjct: 109 DVVKD-----YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = -2

Query: 568 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +FVGNVD A  TPEE+   F   GTV    ++       K FA+V   E      A++  
Sbjct: 3   IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRENAGALRAIE-- 53

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
              LHG +++  P R  V  + +PR
Sbjct: 54  --ALHGHELR--PGRALVVEMSRPR 74
to top
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)|
           (RRM-containing coactivator activator/modulator)
           (Synaptotagmin-interacting protein) (SYT-interacting
           protein)
          Length = 669

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 28/102 (27%), Positives = 49/102 (48%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           LR ++A    E++ G            +++  +FVGNV  ACT +E++  F   G V   
Sbjct: 49  LRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIEC 108

Query: 484 TILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            ++ D       F ++E  EA+A     +L+  E+ G++I V
Sbjct: 109 DVVKD-----YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = -2

Query: 568 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +FVGNVD A  TPEE+   F   GTV    ++       K FA+V   E      A++  
Sbjct: 3   IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRENAGALRAIE-- 53

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
              LHG +++  P R  V  + +PR
Sbjct: 54  --ALHGHELR--PGRALVVEMSRPR 74
to top
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 728

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFV N+DY    +++++ F+  G V R  IL DK G+ +G   V F ++    +A+ + 
Sbjct: 203 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMF 262

Query: 391 ESEL 380
             +L
Sbjct: 263 NGQL 266



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 389
           +FV N+ +  T + ++  FN CG V    I  +  G+ KG   V+F   E  + A ++  
Sbjct: 653 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 711

Query: 388 S-ELHGRQIKV 359
             +L GR+I V
Sbjct: 712 GMKLSGREIDV 722
to top
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70|
           kDa) (snRNP70)
          Length = 448

 Score = 40.4 bits (93), Expect = 0.005
 Identities = 18/89 (20%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
 Frame = -2

Query: 646 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 467
           K+ +E+   DP    +  ++    R++F+  ++Y  +  ++++ F   G + ++ ++ D+
Sbjct: 80  KLEREIALWDPTEIKNATEDPF--RTLFIARINYDTSESKLRREFEFYGPIKKIVLIHDQ 137

Query: 466 -FGQPKGFAYVEFVEAEAIQEAVKLSESE 383
             G+PKG+A++E+     +  A K ++ +
Sbjct: 138 ESGKPKGYAFIEYEHERDMHAAYKHADGK 166
to top
>BOULE_DROME (Q24207) Protein boule|
          Length = 228

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 389
           +FVG +    T  ++ + F++ GTV    I+ D+ G  KG+ +V F   E  QEA +L  
Sbjct: 35  IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDRAGVSKGYGFVTF---ETEQEAQRLQA 91

Query: 388 S----ELHGRQIKVAP 353
                 L  R++ +AP
Sbjct: 92  DGECVVLRDRKLNIAP 107
to top
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein|
           crp79) (Poly(A)-binding protein) (PABP) (Meiotic
           expression up-regulated protein 5)
          Length = 710

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 13/76 (17%)
 Frame = -2

Query: 586 EMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV-TILTDK---------FGQPKG---F 446
           E +S +++VGN+D   + EE+ +HF+  G V  +   L D          F  PK    +
Sbjct: 13  EDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAKPFKPPKNGVQY 72

Query: 445 AYVEFVEAEAIQEAVK 398
            +V+FV AE+I+E +K
Sbjct: 73  GFVKFVNAESIEEVLK 88
to top
>NUCL_MESAU (P08199) Nucleolin (Protein C23)|
          Length = 713

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           +S+++ + N+ Y+ T E +Q+ F     +    +  ++ G+ KG+A++EF   E  +EA+
Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNQQGKSKGYAFIEFASFEDAKEAL 539

Query: 400 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 314
              ++ E+ GR I++         L+ PRG
Sbjct: 540 NSCNKMEIEGRTIRLE--------LQGPRG 561



 Score = 37.4 bits (85), Expect = 0.041
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
 Frame = -2

Query: 634 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 464
           E+QG  G PNA +  +K      ++FV  +    T E +++ F   G+V R  I+TD+  
Sbjct: 555 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 605

Query: 463 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLKQPRGGRG 305
           G  KGF +V+F    +A+A +EA  + + E+ G ++ +   K     G     GGRG
Sbjct: 606 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRG 660



 Score = 37.4 bits (85), Expect = 0.041
 Identities = 20/96 (20%), Positives = 50/96 (52%)
 Frame = -2

Query: 646 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 467
           ++ K+ +  +      E  E     ++F+GN++   +  E++   +     N + ++  +
Sbjct: 283 EMTKQKEVPEAKKQKVEGSESTTPFNLFIGNLNPNKSVAELKVAISEPFAKNDLAVVDVR 342

Query: 466 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 343 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 378
to top
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)|
          Length = 729

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFV N+DY    +++++ F+  G V R  IL DK G+ +G   V F ++    +A+ + 
Sbjct: 204 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 263

Query: 391 ESEL 380
             +L
Sbjct: 264 NGQL 267



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 389
           +FV N+ +  T + ++  FN CG V    I  +  G+ KG   V+F   E  + A ++  
Sbjct: 654 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 712

Query: 388 S-ELHGRQIKV 359
             +L GR+I V
Sbjct: 713 GMKLSGREIDV 723
to top
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast|
           precursor (PSRP-2)
          Length = 260

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           L +++A V +E      ++T S + +   +R ++VGN+      +E++      G +   
Sbjct: 57  LLKVRAVVTEETSS---SSTASSSSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIA 113

Query: 484 TILTDKF-GQPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 359
            ++ DK+ G+ + F +V     E     + KL+++E+ GR+IKV
Sbjct: 114 EVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKV 157
to top
>HNRPM_RAT (Q62826) Heterogeneous nuclear ribonucleoprotein M (hnRNP M) (M4|
           protein)
          Length = 689

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 20/64 (31%), Positives = 36/64 (56%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +VFV N+DY    +++++ F+  G V R  IL DK G+ +G   V F ++    +A+ + 
Sbjct: 164 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 223

Query: 391 ESEL 380
             +L
Sbjct: 224 NGQL 227



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 389
           +FV N+ +  T + ++  FN CG V    I  +  G+ KG   V+F   E  + A ++  
Sbjct: 614 IFVRNLPFDFTWKMLKDKFNECGHVLYADIKMEN-GKSKGCGVVKFESPEVAERACRMMN 672

Query: 388 S-ELHGRQIKV 359
             +L GR+I V
Sbjct: 673 GMKLSGREIDV 683
to top
>NUCL_RAT (P13383) Nucleolin (Protein C23)|
          Length = 712

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 24/90 (26%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           +S+++ + N+ Y+ T E +Q+ F     +    +  +  G+ KG+A++EF   E  +EA+
Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFEKATFIK---VPQNPHGKSKGYAFIEFASFEDAKEAL 542

Query: 400 -KLSESELHGRQIKVAPKRTNVPGLKQPRG 314
              ++ E+ GR I++         L+ PRG
Sbjct: 543 NSCNKMEIEGRTIRLE--------LQGPRG 564



 Score = 37.4 bits (85), Expect = 0.041
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 7/117 (5%)
 Frame = -2

Query: 634 EMQG--GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-F 464
           E+QG  G PNA +  +K      ++FV  +    T E +++ F   G+V R  I+TD+  
Sbjct: 558 ELQGPRGSPNARSQPSK------TLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRET 608

Query: 463 GQPKGFAYVEF---VEAEAIQEAVKLSESELHGRQIKVA-PKRTNVPGLKQPRGGRG 305
           G  KGF +V+F    +A+A +EA  + + E+ G ++ +   K     G     GGRG
Sbjct: 609 GSSKGFGFVDFNSEEDAKAAKEA--MEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRG 663



 Score = 37.4 bits (85), Expect = 0.041
 Identities = 20/96 (20%), Positives = 49/96 (51%)
 Frame = -2

Query: 646 KVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK 467
           ++ K+ +  +      E  E     ++F+GN++   +  E++   +     N +  +  +
Sbjct: 286 EMTKQKEAPEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAAVDVR 345

Query: 466 FGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            G  + F YV+F  AE +++A++L+  ++ G +IK+
Sbjct: 346 TGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKL 381
to top
>FCA_ARATH (O04425) Flowering time control protein FCA|
          Length = 747

 Score = 40.0 bits (92), Expect = 0.006
 Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = -2

Query: 607 TTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEF 431
           T ++  +   +  +FVG+V    T EE++ +F   G V  V ++ DK  GQ +G  +V++
Sbjct: 109 TGTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKY 168

Query: 430 VEAEAIQEAVKLSESEL 380
             ++    A++   +++
Sbjct: 169 ATSKDADRAIRALHNQI 185
to top
>RB97D_DROME (Q02926) Ribonucleoprotein RB97D|
          Length = 471

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = -2

Query: 616 PNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAY 440
           P       +  +  + +FVG +      E ++++F   G V  V +LTDK  G+ +GFA+
Sbjct: 109 PRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAF 168

Query: 439 VEFVEAEAIQEAV 401
           VEF + +A+ +A+
Sbjct: 169 VEFDDYDAVDKAI 181
to top
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 346

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
 Frame = -2

Query: 622 GDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGF 446
           G P  + S    + D   +F+G + +  +P+ ++ +F+  G +    ++ D    + +GF
Sbjct: 5   GSPGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGF 64

Query: 445 AYVEFVEAEAIQEAVKLSESELHGRQI--KVA-PKR 347
            +V F +  ++ + +     EL  + I  KVA P+R
Sbjct: 65  GFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRR 100



 Score = 39.3 bits (90), Expect = 0.011
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 401
           ++ +FVG +      E+V+Q+F   G V    ++ DK   + +GF +V F   + +++  
Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168

Query: 400 KLSESELHGRQI---KVAPKRTNVP 335
           ++   E++ + +   K  PK    P
Sbjct: 169 EIHFHEINNKMVECKKAQPKEVMFP 193
to top
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2|
           (hnRNP A2(B))
          Length = 358

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV- 401
           + +FVG +        ++++F   G +    I+TDK  G+ +GF +V F + + + + V 
Sbjct: 100 KKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVL 159

Query: 400 -KLSESELHGRQIKVAPKRTNVPGLKQPRGGRGFN 299
            K      H  +++ A  +  +  ++  R  RG N
Sbjct: 160 QKYHTINGHNAEVRKALSKQEMQDVQNTRNNRGGN 194
to top
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein|
           3) (PABP 3)
          Length = 660

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 20/72 (27%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           ++F+ N+D +   + + + F+S GT+    +  D  G+ KG+ +V+F + E+ Q A+ KL
Sbjct: 137 NIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKL 196

Query: 394 SESELHGRQIKV 359
           +   ++ +Q+ V
Sbjct: 197 NGMLMNDKQVFV 208



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 18/79 (22%), Positives = 40/79 (50%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 410
           E+    ++++ N+D +   E++++ F+  G V    ++ +  G  +GF +V +   E   
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEAL 386

Query: 409 EAVKLSESELHGRQIKVAP 353
            A+    SE++G+ I   P
Sbjct: 387 RAL----SEMNGKMIGRKP 401
to top
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2|
           (hnRNP A3(B))
          Length = 385

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEA 422
           E KE    R +F+G + +  T + +++HF   G +    ++ D +  + +GF +V +   
Sbjct: 19  EPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCV 78

Query: 421 EAIQEAVKLSESELHGRQIKVAPKR 347
           E +  ++     ++ GR ++  PKR
Sbjct: 79  EEVDASMSARPHKVDGRVVE--PKR 101
to top
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1|
           (hnRNP A3(A))
          Length = 373

 Score = 39.7 bits (91), Expect = 0.008
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = -2

Query: 628 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPK 452
           QG DP       KE    R +F+G + +  T + +++HF   G +    ++ D +  + +
Sbjct: 16  QGHDP-------KEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSR 68

Query: 451 GFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKR 347
           GF +V +   E +  ++     ++ GR ++  PKR
Sbjct: 69  GFGFVTYSCVEEVDASMSARPHKVDGRVVE--PKR 101
to top
>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 563

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 410
           ++  +R++F+GN+D++ +  E+++ F   G +  V I     GQ   +A+++F   +   
Sbjct: 5   DQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAH 64

Query: 409 EAVKLSESELHGRQ-IKVAPKRTNVPGLKQPRGGRGFN 299
            A       + GR  IK+   + N P  +   GG G N
Sbjct: 65  RAKVAMSGRVIGRNPIKIGYGKAN-PTTRLWVGGLGPN 101
to top
>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 564

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQ 410
           ++  +R++F+GN+D++ +  E+++ F   G +  V I     GQ   +A+++F   +   
Sbjct: 5   DQRATRNLFIGNLDHSVSEVELRRAFEKYGIIEEVVIKRPARGQGGAYAFLKFQNLDMAH 64

Query: 409 EAVKLSESELHGRQ-IKVAPKRTNVPGLKQPRGGRGFN 299
            A       + GR  IK+   + N P  +   GG G N
Sbjct: 65  RAKVAMSGRVIGRNPIKIGYGKAN-PTTRLWVGGLGPN 101
to top
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 449
           GG P  +    ++      +FVG +      +E+   F   G +  + ++ D   G  +G
Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204

Query: 448 FAYVEFVEAEAIQEAVKL 395
           +A+V F   EA QEAVKL
Sbjct: 205 YAFVTFCTKEAAQEAVKL 222
to top
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 449
           GG P  +    ++      +FVG +      +E+   F   G +  + ++ D   G  +G
Sbjct: 145 GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 204

Query: 448 FAYVEFVEAEAIQEAVKL 395
           +A+V F   EA QEAVKL
Sbjct: 205 YAFVTFCTKEAAQEAVKL 222
to top
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA|
           binding protein SEB4) (CLL-associated antigen KW-5)
          Length = 216

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVKLS 392
           +FVG + Y  T   ++++F   G +    ++TD+  G+ +G+ +V   +  A + A K  
Sbjct: 13  IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDP 72

Query: 391 ESELHGRQIKV 359
              + GR+  V
Sbjct: 73  NPIIDGRKANV 83
to top
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 960

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEA 422
           E ++  +S  +FV N+ Y  T E++++ F+  G ++ +    D   + PKGFA++ F+  
Sbjct: 394 EEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFP 453

Query: 421 E-AIQEAVKLSESELHGRQIKVAP 353
           E A++   ++      GR + V P
Sbjct: 454 EHAVKAYSEVDGQVFQGRMLHVLP 477



 Score = 37.7 bits (86), Expect = 0.031
 Identities = 22/92 (23%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ----PKGFAYVEF 431
           E +E +   ++F+ N+++  T E++++ F+  GTV   +I   K         GF +VE+
Sbjct: 722 EEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEY 781

Query: 430 VEAEAIQEAVKLSESEL---HGRQIKVAPKRT 344
            + E  Q+A+K  +  +   H  +++++ + T
Sbjct: 782 RKPEQAQKALKQLQGHVVDGHKLEVRISERAT 813
to top
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15|
          Length = 296

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 25/88 (28%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV 401
           SR V++G++ Y  T E++    ++ G V  + ++ D + G+ KG+A++EF + E+   AV
Sbjct: 17  SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAV 76

Query: 400 K-LSESELHGRQIKVA-PKRTNVPGLKQ 323
           + L+  +L  R +K      +++ G+ Q
Sbjct: 77  RNLNGYQLGSRFLKCGYSSNSDISGVSQ 104
to top
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)|
           (PABP)
          Length = 634

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +VF+ N+D A   + +   F++ G +    + TD+ G  KG+ +V F   EA   ++ K+
Sbjct: 91  NVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKV 150

Query: 394 SESELHGRQIKV 359
           +   L+G+++ V
Sbjct: 151 NGMLLNGKKVYV 162



 Score = 36.2 bits (82), Expect = 0.091
 Identities = 23/85 (27%), Positives = 42/85 (49%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +++V N+D     + ++  F+  G +    ++TD+ G+ KGF +V F  A     AV   
Sbjct: 288 NLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAV--- 344

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
            +EL+GR +   P    +   K+ R
Sbjct: 345 -TELNGRVVGSKPLYVALAQRKEER 368
to top
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKG 449
           GG P  +    ++      +FVG +      +E+   F   G +  + ++ D   G  +G
Sbjct: 55  GGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRG 114

Query: 448 FAYVEFVEAEAIQEAVKL 395
           +A+V F   EA QEAVKL
Sbjct: 115 YAFVTFCTKEAAQEAVKL 132
to top
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)|
          Length = 328

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAV 401
           ++ +FVG +      E+V+Q+F   G V    ++ DK   + +GF +V F   + +++  
Sbjct: 109 TKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVC 168

Query: 400 KLSESELHGRQI---KVAPKRTNVP 335
           ++   E++ + +   K  PK    P
Sbjct: 169 EIHFHEINNKMVECKKAQPKEVMFP 193
to top
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 27/102 (26%), Positives = 49/102 (48%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +R ++A    E++ G            +++  +FVGNV  ACT +E++  F   G V   
Sbjct: 49  VRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIEC 108

Query: 484 TILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            ++ D       F ++E  EA+A     +L+  E+ G++I V
Sbjct: 109 DVVKD-----YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = -2

Query: 568 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +FVGNVD A  TPEE+   F   GTV    ++       K FA+V   E      A++  
Sbjct: 3   IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRENAGAVRAIE-- 53

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
              LHG +++  P R  V  + +PR
Sbjct: 54  --ALHGHELR--PGRALVVEMSRPR 74
to top
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)|
          Length = 669

 Score = 39.3 bits (90), Expect = 0.011
 Identities = 27/102 (26%), Positives = 49/102 (48%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +R ++A    E++ G            +++  +FVGNV  ACT +E++  F   G V   
Sbjct: 49  VRAIEALHGHELRPGRALVVEMSRPRPLNTWKIFVGNVSAACTSQELRSLFERRGRVIEC 108

Query: 484 TILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
            ++ D       F ++E  EA+A     +L+  E+ G++I V
Sbjct: 109 DVVKD-----YAFVHME-KEADAKAAIAQLNGKEVKGKRINV 144



 Score = 35.8 bits (81), Expect = 0.12
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = -2

Query: 568 VFVGNVDYA-CTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +FVGNVD A  TPEE+   F   GTV    ++       K FA+V   E      A++  
Sbjct: 3   IFVGNVDGADTTPEELAALFAPYGTVMSCAVM-------KQFAFVHMRENAGAVRAIE-- 53

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
              LHG +++  P R  V  + +PR
Sbjct: 54  --ALHGHELR--PGRALVVEMSRPR 74
to top
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein|
          Length = 348

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-----PKGFAYVEFVE 425
           ++ D   VFVG +  +    E++  F + GTV +VTI   +  +     P G A+V F  
Sbjct: 39  QQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNN 98

Query: 424 AEAIQEAVK-LSESELHGRQIKVAPKRTNVPGLKQP 320
            E + +A++ L+   L  R+I V   R   P  +QP
Sbjct: 99  QEDVDKAIETLNGKTLDDREIVVQKAR---PVQEQP 131
to top
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)|
          Length = 348

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +R  + KV+    GG          E +   +++V N+    T +++   F   G + + 
Sbjct: 176 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQK 225

Query: 484 TILTDKF-GQPKGFAYVEFVEAEAIQEAV 401
            IL DK  G+P+G A+V F + E  QEA+
Sbjct: 226 NILRDKLTGKPRGVAFVRFNKREEAQEAI 254



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -2

Query: 538 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 365
           T  E+   F + G +N   I+ D K G   G+A+V+F      Q A+K L+   +  +++
Sbjct: 122 TDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRL 181

Query: 364 KVAPKRTNVPGLK 326
           KV+  R     +K
Sbjct: 182 KVSYARPGGESIK 194
to top
>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP--KGFAYVEFVEAEAIQEAVK 398
           + F+GN+ Y  T E +++ F     ++ V +  +       KGF Y EF + +++  A+ 
Sbjct: 97  TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALS 155

Query: 397 LSESELHGRQIKV 359
           L+E  L  R+I+V
Sbjct: 156 LNEESLGNRRIRV 168
to top
>HSH49_YEAST (Q99181) Protein HSH49|
          Length = 213

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVKL 395
           +V+VGN+D   T E++ + F     V R+    DK  Q  +G+A++EF      Q A+K+
Sbjct: 10  TVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQYAIKI 69

Query: 394 SES--ELHGRQIKV 359
             +   L+ R IKV
Sbjct: 70  MNNTVRLYDRLIKV 83
to top
>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
 Frame = -2

Query: 655 MQAKVAKEMQGGDPNATTSEA--KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT 482
           +QAK  K +  GD   + S+   KEE + R+V VG +    T ++++  F     V  VT
Sbjct: 230 LQAK-PKALTLGDNVLSVSQPRNKEENNERTVVVGLIGPNITKDDLKTFFEKVAPVEAVT 288

Query: 481 ILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
           I +++   P+  A+V     + I +A+KL  +EL  R I V
Sbjct: 289 ISSNRL-MPR--AFVRLASVDDIPKALKLHSTELFSRFITV 326
to top
>SCE3_SCHPO (O14369) Probable RNA-binding protein sce3|
          Length = 388

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
 Frame = -2

Query: 562 VGNVDYACTPEEVQQHFNSCGTVNRVTI--LTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 389
           VGN+ +  T  ++   F    T  R+ I  LT++    +GF YVEF  A+ +  A+ LS 
Sbjct: 98  VGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTER---SRGFGYVEFETADTLSAALALSG 154

Query: 388 SELHGRQIKVA---PKRT 344
            +L GR +++    P+R+
Sbjct: 155 EDLMGRPVRITVAEPRRS 172
to top
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein|
           1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B)
           (PABP 1-B) (xPABP1-B)
          Length = 633

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +V++ N       E +++ F   G    V ++TD  G+ +GF +V F   E  Q+AV  +
Sbjct: 192 NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDM 251

Query: 394 SESELHGRQIKVAPKRTNV 338
           +  +L+G+ I V   +  V
Sbjct: 252 NGKDLNGKAIFVGRAQKKV 270
to top
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member|
           A1 (RNA-binding motif protein 1)
          Length = 496

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVE-AEAIQEAVKLS 392
           +F+G ++     + ++  F   G ++ V ++ D+  + +GFA++ F   A+A   A  ++
Sbjct: 10  LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMN 69

Query: 391 ESELHGRQIKV 359
              LHG+ IKV
Sbjct: 70  GKSLHGKAIKV 80
to top
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding|
           protein SEB4)
          Length = 237

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -2

Query: 595 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAE 419
           ++++     +FVG + Y  T   ++++F   G +    ++TD+  G+ +G+ +V   +  
Sbjct: 25  SRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA 84

Query: 418 AIQEAVKLSESELHGRQIKV 359
           A   A K     + GR+  V
Sbjct: 85  AADRACKDPNPIIDGRKANV 104
to top
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 38.9 bits (89), Expect = 0.014
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           + + V+VGN+      +EV+  F+  G +  V I   K G+   FA+VEF +    ++AV
Sbjct: 7   EDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI---KSGRGPAFAFVEFEDHRDAEDAV 63

Query: 400 KLSES-ELHGRQIKV 359
           +  +  E  GR+I+V
Sbjct: 64  RARDGYEFDGRRIRV 78
to top
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -2

Query: 610 ATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSC-GTVNRVTILTDKFGQPKGFAYVE 434
           A T  AK E   R+V+VGN+       EV + FN   G V    + +     P  +AYVE
Sbjct: 151 ADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDALPCAYAYVE 210

Query: 433 FVEAEAIQEAVKLSESELHGRQIKVAPKRTNV 338
           F +  ++  A++    E   R +K+   R  +
Sbjct: 211 FSQQASVCNALQNDGFEFKERPLKIQHSRVAI 242
to top
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 278

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTI-LTDKFGQPKGFAYVEF 431
           +++G++  +    ++Q++FN  GTV R+ +  + K G  KG+AYVE+
Sbjct: 43  IYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAYVEY 89
to top
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)|
          Length = 279

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = -2

Query: 637 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-G 461
           ++++ GD      E +       +FVGN+ ++     + + F   G V  V ++ DK  G
Sbjct: 68  EDVEDGDEGV--EEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTG 125

Query: 460 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 359
           + +GF +V     E ++ A  + +  EL GR ++V
Sbjct: 126 RSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRV 160
to top
>SXL_DROSU (Q24668) Protein sex-lethal|
          Length = 354

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +R  + KV+    GG          E +   +++V N+    T +++   F   G++ + 
Sbjct: 193 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 242

Query: 484 TILTDKF-GQPKGFAYVEFVEAEAIQEAV 401
            IL DK  G+P+G A+V + + E  QEA+
Sbjct: 243 NILRDKLTGRPRGVAFVRYNKREEAQEAI 271



 Score = 32.0 bits (71), Expect = 1.7
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAI 413
           +   + ++ V  +    T  E+   F + G +N   I+ D K G   G+A+V+F      
Sbjct: 122 QRSSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDS 181

Query: 412 QEAVK-LSESELHGRQIKVAPKRTNVPGLK 326
           Q A+K L+   +  +++KV+  R     +K
Sbjct: 182 QRAIKVLNGITVRNKRLKVSYARPGGESIK 211
to top
>SXL_DROME (P19339) Protein sex-lethal|
          Length = 354

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           +R  + KV+    GG          E +   +++V N+    T +++   F   G++ + 
Sbjct: 191 VRNKRLKVSYARPGG----------ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 240

Query: 484 TILTDKF-GQPKGFAYVEFVEAEAIQEAV 401
            IL DK  G+P+G A+V + + E  QEA+
Sbjct: 241 NILRDKLTGRPRGVAFVRYNKREEAQEAI 269



 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = -2

Query: 538 TPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQI 365
           T  E+   F + G +N   I+ D K G   G+A+V+F      Q A+K L+   +  +++
Sbjct: 137 TDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 196

Query: 364 KVAPKRTNVPGLK 326
           KV+  R     +K
Sbjct: 197 KVSYARPGGESIK 209
to top
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)|
          Length = 197

 Score = 38.5 bits (88), Expect = 0.018
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 392
           V+VGN+      ++++  F   G +N V I  +    P GFA+VEF   +  ++A   L+
Sbjct: 9   VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFN----PPGFAFVEFEHRDDAEKACDILN 64

Query: 391 ESELHGRQIKV----APKRTNVPGLKQPRGGR 308
            SEL G Q++V       R    G    RGGR
Sbjct: 65  GSELLGSQLRVEISKGRPRQGRRGGPMDRGGR 96
to top
>NOP12_DEBHA (Q6BTS9) Nucleolar protein 12|
          Length = 462

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNS--CGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQ 410
           + R++FVGN+D+    E + ++FNS     V  V ++ D K    KGFA V+F +  ++ 
Sbjct: 264 NKRTIFVGNLDFEEKEETLWRYFNSKTDNDVESVRVIRDAKTNVGKGFALVQFKDTLSVN 323

Query: 409 EAVKLSESELHG---RQIKVAPKRTNV-PGLKQP 320
           +++ L++  +     R+++++  + +  P +  P
Sbjct: 324 KSLLLNDKPMSAEKKRKLRISKAKAHTKPSILSP 357
to top
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor|
           (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3)
           (AtRBP33) (RNA-binding protein cp31)
          Length = 329

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVEAEAIQEAVKLS 392
           V+VGN+ +      ++Q F+  G V    ++ D+  G+ +GF +V   + + + EA+   
Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAI--- 302

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPRGG 311
            S L G+ ++    R NV   + PR G
Sbjct: 303 -SALDGQNLEGRAIRVNVAEERPPRRG 328



 Score = 36.6 bits (83), Expect = 0.070
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
 Frame = -2

Query: 601 SEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FGQPKGFAYVEFVE 425
           +E  E  +   +FVGN+ Y    + +   F   GTV    ++ ++   Q +GF +V    
Sbjct: 141 AEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSS 200

Query: 424 AEAIQEAV-KLSESELHGRQI---KVAPK 350
            +  + AV K +  +L+GR +   K AP+
Sbjct: 201 VDEAETAVEKFNRYDLNGRLLTVNKAAPR 229
to top
>RBM28_MOUSE (Q8CGC6) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 749

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 3/105 (2%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRS--VFVGNVDYACTPEEVQQHFNSCGTVN 491
           LR    +  K      P       K ++  +   + + N+ + C+ ++++  F   GTV 
Sbjct: 81  LRNKSKETRKNENAESPKKEPKHKKAKVADKKARLIIRNLSFKCSEDDLKAVFTHYGTVL 140

Query: 490 RVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV 359
            V I     G+ +GFA+V+F       +A+K  +  E+ GR + V
Sbjct: 141 EVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKGRTVAV 185



 Score = 35.4 bits (80), Expect = 0.15
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVK 398
           ++FVG +  +   +++++ F+  G V +  ++T+K  +  +GF YV F   E +Q A+K
Sbjct: 4   TLFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62
to top
>YHC4_YEAST (P38741) Hypothetical 80.1 kDa protein in SNF6-SPO11 intergenic|
           region
          Length = 713

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 22/69 (31%), Positives = 38/69 (55%)
 Frame = -2

Query: 583 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 404
           +D RS+FVG +D   T EE+ + F++ G +  + ++   F     FA++++   EA   A
Sbjct: 343 IDKRSIFVGQLDKETTREELNRRFSTHGKIQDINLI---FKPTNIFAFIKYETEEAAAAA 399

Query: 403 VKLSESELH 377
           +   ESE H
Sbjct: 400 L---ESENH 405
to top
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein|
           1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A)
           (PABP 1-A) (xPABP1-A)
          Length = 633

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV-KL 395
           +V++ N       E +++ F   G    V ++TD  G+ KGF +V F   E  Q+AV ++
Sbjct: 192 NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEM 251

Query: 394 SESELHGRQIKVAPKRTNV 338
           +  +++G+ + V   +  V
Sbjct: 252 NGKDMNGKSMFVGRAQKKV 270
to top
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 38.1 bits (87), Expect = 0.024
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
 Frame = -2

Query: 613 NATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYV 437
           N  T +  ++     VF+G +    T  +++  FN  G V  V I+ D+  +  +GF ++
Sbjct: 83  NPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFL 142

Query: 436 EFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRG 305
            F E  +++         L+G+Q+++           +PR G G
Sbjct: 143 SFEEESSVEHVTNERYINLNGKQVEIKK--------AEPRDGSG 178
to top
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)|
           (Increased sodium tolerance protein 3)
          Length = 148

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
 Frame = -2

Query: 637 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FG 461
           KE+Q G  +   S   E  D+  +++GN++   T  ++   F+  G    V +  D+  G
Sbjct: 10  KELQSGILSPHQSWHNEYKDNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTG 69

Query: 460 QPKGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV-----APKRT 344
           + +GFAY+++ +  +   AV  L+  ++ GR +K+      PKR+
Sbjct: 70  ESQGFAYLKYEDQRSTILAVDNLNGFKIGGRALKIDHTFYRPKRS 114
to top
>GRSF1_MOUSE (Q8C5Q4) G-rich sequence factor 1 (GRSF-1)|
          Length = 479

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -2

Query: 547 YACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVKLSESELHGR 371
           Y+C  +++   F     V+ +T + D  G+ K G AYV+F E E   +A+     E+  R
Sbjct: 258 YSCNEKDIVDFFAGLNIVD-ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNR 316

Query: 370 QIKVAPKRTN 341
            I++ P R N
Sbjct: 317 YIEIFPSRRN 326
to top
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6|
           (RNA-binding protein srp-1) (CeSRp20)
          Length = 179

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
 Frame = -2

Query: 583 MDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 404
           MD++ V+VG +    T +E+++ F+  G + +V +      +P GFA+VE+ +    ++A
Sbjct: 1   MDAK-VYVGGLPSDATSQELEEIFDRFGRIRKVWVAR----RPPGFAFVEYDDVRDAEDA 55

Query: 403 VK-LSESELHGRQIKVAPKRTNVPGLKQPRGGRG 305
           V+ L  S + G + +V        G ++  GGRG
Sbjct: 56  VRALDGSRICGVRARVELS----TGQRRGGGGRG 85
to top
>GRSF1_HUMAN (Q12849) G-rich sequence factor 1 (GRSF-1)|
          Length = 447

 Score = 37.7 bits (86), Expect = 0.031
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = -2

Query: 547 YACTPEEVQQHFNSCGTVNRVTILTDKFGQPK-GFAYVEFVEAEAIQEAVKLSESELHGR 371
           Y+C  +++   F     V+ +T + D  G+ K G AYV+F E E   +A+     E+  R
Sbjct: 226 YSCNEKDIVDFFAGLNIVD-ITFVMDYRGRRKTGEAYVQFEEPEMANQALLKHREEIGNR 284

Query: 370 QIKVAPKRTN 341
            I++ P R N
Sbjct: 285 YIEIFPSRRN 294
to top
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (Neural-specific SR pro
          Length = 262

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 398
           S+FV NV      E++++ F   G +  V +  D + + P+GFAYV+F +    ++A+  
Sbjct: 11  SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70

Query: 397 LSESELHGRQIKV 359
           L    + GRQI++
Sbjct: 71  LDRKWICGRQIEI 83
to top
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1|
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein) (40 kDa SR-repressor pr
          Length = 262

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ-PKGFAYVEFVEAEAIQEAV-K 398
           S+FV NV      E++++ F   G +  V +  D + + P+GFAYV+F +    ++A+  
Sbjct: 11  SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70

Query: 397 LSESELHGRQIKV 359
           L    + GRQI++
Sbjct: 71  LDRKWICGRQIEI 83
to top
>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCG-TVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKL 395
           + F+GN+ Y  T + ++  F     +  R+        + KGF Y EF + +++  A+ L
Sbjct: 97  TAFLGNLPYDVTEDSIKDFFRGLNISAVRLPREPSNPDRLKGFGYAEFEDLDSLLSALSL 156

Query: 394 SESELHGRQIKV 359
           +E  L  R+I+V
Sbjct: 157 NEESLGNRRIRV 168
to top
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)|
           binding protein) (ePABP)
          Length = 629

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = -2

Query: 622 GDPNATTSEAKEEMDSR----SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           G+      + K+E  +R    +++V N+D     + +++ F+  GT+    ++T+  G  
Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG-GHS 332

Query: 454 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPR 317
           KGF +V F   E   +AV    +E++GR +   P    +   K+ R
Sbjct: 333 KGFGFVCFSSPEEATKAV----TEMNGRIVSTKPLYVALAQRKEER 374



 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           +VF+ N+D +   + +   F++ G +    ++ D+ G  +G+ +V F   EA   A++
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETQEAANRAIQ 156
to top
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic|
           poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B)
          Length = 629

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
 Frame = -2

Query: 622 GDPNATTSEAKEEMDSR----SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           G+      + K+E  +R    +++V N+D     + +++ F+  GT+    ++T+  G  
Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG-GHS 332

Query: 454 KGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPR 317
           KGF +V F   E   +AV    +E++GR +   P    +   K+ R
Sbjct: 333 KGFGFVCFSSPEEATKAV----TEMNGRIVSTKPLYVALAQRKEER 374



 Score = 30.8 bits (68), Expect = 3.8
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           +VF+ N+D +   + +   F++ G +    ++ D++G  +G+ +V F   EA   A++
Sbjct: 100 NVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGS-RGYGFVHFETQEAANRAIQ 156
to top
>RBM10_HUMAN (P98175) RNA-binding protein 10 (RNA-binding motif protein 10)|
           (DXS8237E)
          Length = 929

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = -2

Query: 628 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNR-VTILTDKF-GQP 455
           QG +      E +EE  S  V +  +  A T ++++    S G   R V ++ +K  GQ 
Sbjct: 111 QGEEEEEEEDEEEEEKASNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQS 170

Query: 454 KGFAYVEFVEAEAIQEAVKLSESELHGRQI 365
           +GFA+VEF     +Q+A +  E+  H   I
Sbjct: 171 RGFAFVEF---SHLQDATRWMEANQHSLNI 197
to top
>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = -2

Query: 634 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 454 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 314
             +A+V    AE   EA++ L  +E  G+++ V     +    PG+    G
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
to top
>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = -2

Query: 634 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 454 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 314
             +A+V    AE   EA++ L  +E  G+++ V     +    PG+    G
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
to top
>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = -2

Query: 634 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 454 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 314
             +A+V    AE   EA++ L  +E  G+++ V     +    PG+    G
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
to top
>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = -2

Query: 634 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 454 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 314
             +A+V    AE   EA++ L  +E  G+++ V     +    PG+    G
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
to top
>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = -2

Query: 634 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKASTK-LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----- 112

Query: 454 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 314
             +A+V    AE   EA++ L  +E  G+++ V     +    PG+    G
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
to top
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly|
           U-binding splicing factor) (Protein half pint) (PUF60
           homolog)
          Length = 637

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAV-KL 395
           V+VG++ +    + ++  F   G +  + +  D   Q  KGFA+VE+   E  Q A+ ++
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191

Query: 394 SESELHGRQIKVAPKRTNVPGLKQ 323
           + + + GR IKV  + +N+P  +Q
Sbjct: 192 NGALMGGRNIKVG-RPSNMPQAQQ 214
to top
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 496

 Score = 37.4 bits (85), Expect = 0.041
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNS----CGTVNRV--TILTDKFGQPKGFAYVEFVEAEA 416
           SR ++VGN+ + C  E +   FN     CG        IL  +    K FA++EF   + 
Sbjct: 183 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCGLAQAPGNPILLCQINLDKNFAFIEFRSIDE 242

Query: 415 IQEAVKLSESELHGRQIKVAPKRTNVP 335
               +        G+Q+KV   R   P
Sbjct: 243 TTAGMAFDGINFMGQQLKVRRPRDYQP 269



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           +  +F+G +    T ++V++   S G +   ++  D  G  KG+A+ E+++     +A+ 
Sbjct: 290 ANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPTLTDQAIA 349

Query: 397 -LSESELHGRQIKV 359
            L+  +L  +Q+ V
Sbjct: 350 GLNGMQLGDKQLVV 363
to top
>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = -2

Query: 634 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD----- 112

Query: 454 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 314
             +A+V    AE   EA++ L  +E  G+++ V     +    PG+    G
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
to top
>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
 Frame = -2

Query: 595 AKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 416
           A  E+    + V N+ +  T E+V+  F   G +  V +  D   + KGF Y+++    +
Sbjct: 333 ASAEIPFHRLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPIS 392

Query: 415 IQEAV-KLSESELHGRQIKV 359
            + A+ K++  +L GR ++V
Sbjct: 393 ARNALEKMNGFDLAGRNMRV 412
to top
>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
 Frame = -2

Query: 634 EMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           ++ G + N   S+ K +  ++ + VGN+   CT +E++  F   G V    I+ D     
Sbjct: 59  KLHGVNINVEASKNKSKTSTK-LHVGNISPTCTNKELRAKFEEYGPVIECDIVKD----- 112

Query: 454 KGFAYVEFVEAEAIQEAVK-LSESELHGRQIKV---APKRTNVPGLKQPRG 314
             +A+V    AE   EA++ L  +E  G+++ V     +    PG+    G
Sbjct: 113 --YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSG 161
to top
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like|
          Length = 276

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 16/47 (34%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTI-LTDKFGQPKGFAYVEF 431
           +++G++  A    +++++F+  GTV R+ +  + K G  KG+AYVEF
Sbjct: 43  IYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAYVEF 89
to top
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1|
          Length = 283

 Score = 37.0 bits (84), Expect = 0.053
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ--PKGFAYVEFVEAEAIQEAVK- 398
           V +G +    T + + + F++ G +  + +  D++     KG+AYVEF   E  ++A+K 
Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199

Query: 397 LSESELHGRQIKVAPKRTNVPGLKQPR 317
           +   ++ G++I  +   T  P    PR
Sbjct: 200 MDGGQIDGQEITASAVLTPWPMRPMPR 226
to top
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)|
          Length = 758

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP-KGFAYVEFVEAEAIQEAVK 398
           ++FVG +  +   E++++ F+  G V +  ++T+K  +  +GF YV F   E +Q A+K
Sbjct: 4   TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK 62



 Score = 34.3 bits (77), Expect = 0.35
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -2

Query: 598 EAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAE 419
           +AK       + + N+ + C+ ++++  F   G V  V I     G+ +GF +V+F    
Sbjct: 105 KAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLL 164

Query: 418 AIQEAVK-LSESELHGRQIKV 359
              +A+K ++  E+ GR + V
Sbjct: 165 EAGKALKGMNMKEIKGRTVAV 185
to top
>SFR12_MOUSE (Q8BZX4) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86)
          Length = 494

 Score = 36.6 bits (83), Expect = 0.070
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
 Frame = -2

Query: 619 DPNATT-------------SEAKEEMDSRSVFVGNVD-YACTPEEVQQHFNSCGTVNRVT 482
           DPN TT               +K +   R+V+VGN++    T +++ + F   G V  V 
Sbjct: 41  DPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVR 100

Query: 481 ILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKV 359
           +  D+  QP  FA+VEF +  ++  A+  +      R +K+
Sbjct: 101 MAGDET-QPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKI 140
to top
>G3BP_SCHPO (O94260) Putative G3BP-like protein|
          Length = 434

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 26/110 (23%), Positives = 50/110 (45%)
 Frame = -2

Query: 628 QGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKG 449
           Q   P A  +++ E +++ SVFV N+    +   ++   +  G V  +     +F + KG
Sbjct: 298 QTQQPTAPYTQSNELLET-SVFVKNIPPETSDVSLKSAMSIFGPVKAI-----EFARRKG 351

Query: 448 FAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLKQPRGGRGFN 299
            AYV+FV  E +Q A+     +++   + +  +R    G     G +  N
Sbjct: 352 TAYVDFVNHECVQLALNKKTLQINNATLNIEERRRLFSGKFNKSGDKKSN 401
to top
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 475

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT------ILTDKFGQPKGFAYVEFVEAEA 416
           +R ++VGN+ +  T E +   FN+   +  +T      +L  +  Q K FA++EF   + 
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207

Query: 415 IQEAVKLSESELHGRQIKV 359
             +A+        G+ +K+
Sbjct: 208 TTQAMAFDGIIFQGQSLKI 226
to top
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (hU2AF(65))
          Length = 475

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVT------ILTDKFGQPKGFAYVEFVEAEA 416
           +R ++VGN+ +  T E +   FN+   +  +T      +L  +  Q K FA++EF   + 
Sbjct: 148 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDE 207

Query: 415 IQEAVKLSESELHGRQIKV 359
             +A+        G+ +K+
Sbjct: 208 TTQAMAFDGIIFQGQSLKI 226
to top
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 22/69 (31%), Positives = 37/69 (53%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           SR+V+VGN+       EV+  F+  G V ++ +      +P G+A+VEF +A   ++A+ 
Sbjct: 6   SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP--RPPGYAFVEFDDARDAEDAI- 62

Query: 397 LSESELHGR 371
                 HGR
Sbjct: 63  ------HGR 65
to top
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 36.2 bits (82), Expect = 0.091
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFN------SCGTVNRVTILTDKFGQPKGFAYVEFVEAEA 416
           +R ++VGN+ +  T EE+ + FN               +L  +    K FA++EF   + 
Sbjct: 92  ARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDE 151

Query: 415 IQEAVKLSESELHGRQIKV--------APKRTNVPGLK 326
             +A+      L G+ +K+         P  T+ P +K
Sbjct: 152 TTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIK 189
to top
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 404
           ++R ++VGN+      E++ +HF   G V  V IL  +  +    A+V+FV+ ++ Q+A
Sbjct: 4   ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
to top
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 392
           + V N+D+  +  ++Q+ F   GT+ +  +  D+ G+  G A V F  +A+A++   + +
Sbjct: 107 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 166

Query: 391 ESELHGRQIKVAPKRTNVPGLKQP-----RGG 311
              L GR + +    + +   ++P     RGG
Sbjct: 167 GVPLDGRPMNIQLVTSQIDAQRRPAQSVNRGG 198
to top
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3|
           subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding
           subunit) (eIF3g)
          Length = 256

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
 Frame = -2

Query: 592 KEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEA 416
           +   D  +  V N+      +E++  F   G V R+ I  DK  G PKGFA+V F   + 
Sbjct: 170 RNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229

Query: 415 IQEAV-KLSESELHGRQIKV 359
              A+ +L++  ++   +KV
Sbjct: 230 AARAIAELNDIRMYHMVLKV 249
to top
>SFR12_RAT (Q9JKL7) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (SR-related protein of 86 kDa)
          Length = 494

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVD-YACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           R+V+VGN++    T +++ + F   G V  V +  D+  QP  FA+VEF +  ++  A+ 
Sbjct: 69  RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 127

Query: 397 LSESELHGRQIKV 359
            +      R +K+
Sbjct: 128 FNGVMFGDRPLKI 140
to top
>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 18/59 (30%), Positives = 34/59 (57%)
 Frame = -2

Query: 580 DSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEA 404
           ++R ++VGN+      E++ +HF   G V  V IL  +  +    A+V+FV+ ++ Q+A
Sbjct: 4   ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVAAFVDFVDIKSAQKA 62
to top
>HNRH1_MOUSE (O35737) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           V V  + ++C+ +EVQ+ F+ C   N    +  +  + G+P G A+VE    + ++ A+K
Sbjct: 12  VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 71

Query: 397 LSESELHGRQIKV 359
                +  R ++V
Sbjct: 72  KDRETMGHRYVEV 84
to top
>HNRH1_HUMAN (P31943) Heterogeneous nuclear ribonucleoprotein H (hnRNP H)|
          Length = 448

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           V V  + ++C+ +EVQ+ F+ C   N    +  +  + G+P G A+VE    + ++ A+K
Sbjct: 12  VKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVELESEDEVKLALK 71

Query: 397 LSESELHGRQIKV 359
                +  R ++V
Sbjct: 72  KDRETMGHRYVEV 84
to top
>SFR12_HUMAN (Q8WXA9) Splicing factor, arginine/serine-rich 12|
           (Serine-arginine-rich splicing regulatory protein 86)
           (SRrp86) (Splicing regulatory protein 508) (SRrp508)
          Length = 508

 Score = 35.8 bits (81), Expect = 0.12
 Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
 Frame = -2

Query: 574 RSVFVGNVD-YACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           R+V+VGN++    T +++ + F   G V  V +  D+  QP  FA+VEF +  ++  A+ 
Sbjct: 66  RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDET-QPTRFAFVEFADQNSVPRALA 124

Query: 397 LSESELHGRQIKV 359
            +      R +K+
Sbjct: 125 FNGVMFGDRPLKI 137
to top
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor|
           65 kDa subunit) (U2 snRNP auxiliary factor large
           subunit) (U2AF65)
          Length = 488

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
 Frame = -2

Query: 619 DPNATTSEAKEEMDSRS-VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFA 443
           D NA    +   +DS + +F+G +    T ++V++   S G +   ++  D  G  KG+A
Sbjct: 266 DMNARMPVSSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYA 325

Query: 442 YVEFVEAEAIQEAVK-LSESELHGRQIKV 359
           + E+++     +A+  L+  +L  +Q+ V
Sbjct: 326 FAEYLDPTLTDQAIAGLNGMQLGDKQLVV 354



 Score = 35.0 bits (79), Expect = 0.20
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNS----CGTVNRV--TILTDKFGQPKGFAYVEFVEAEA 416
           SR ++VGN+ + C  E +   FN     C         IL  +    K FA++EF   + 
Sbjct: 174 SRRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGNPILLCQINLDKNFAFIEFRSIDE 233

Query: 415 IQEAVKLSESELHGRQIKVAPKRTNVP 335
               +        G+Q+KV   R   P
Sbjct: 234 TTAGMAFDGINFMGQQLKVRRPRDYQP 260
to top
>HNRH2_MOUSE (P70333) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
          Length = 449

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           V V  + ++C+ EEV + F+ C   N    V  +  + G+P G A+VE    + ++ A+K
Sbjct: 13  VKVRGLPWSCSAEEVMRFFSDCKIQNGTSGVRFIYTREGRPSGEAFVELESEDEVKLALK 72

Query: 397 LSESELHGRQIKV 359
                +  R ++V
Sbjct: 73  KDRETMGHRYVEV 85
to top
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic|
           poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A)
          Length = 629

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 22/85 (25%), Positives = 42/85 (49%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLS 392
           +++V N+D     + +++ F   GT+    ++T+  G  KGF +V F   E   +AV   
Sbjct: 295 NLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG-GHSKGFGFVCFSSPEEATKAV--- 350

Query: 391 ESELHGRQIKVAPKRTNVPGLKQPR 317
            +E++GR +   P    +   K+ R
Sbjct: 351 -TEMNGRIVSTKPLYVALAQRKEER 374



 Score = 29.6 bits (65), Expect = 8.5
 Identities = 14/58 (24%), Positives = 31/58 (53%)
 Frame = -2

Query: 571 SVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           +VF+ N+D +   + +   F++ G +    ++ D+ G  +G+ +V F   EA   A++
Sbjct: 100 NVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQ 156
to top
>HNRH2_HUMAN (P55795) Heterogeneous nuclear ribonucleoprotein H' (hnRNP H')|
           (FTP-3)
          Length = 449

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNR---VTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           V V  + ++C+ +EV + F+ C   N    +  +  + G+P G A+VE    E ++ A+K
Sbjct: 13  VKVRGLPWSCSADEVMRFFSDCKIQNGTSGIRFIYTREGRPSGEAFVELESEEEVKLALK 72

Query: 397 LSESELHGRQIKV 359
                +  R ++V
Sbjct: 73  KDRETMGHRYVEV 85
to top
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2|
          Length = 218

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 392
           + V N+D+  +  ++Q+ F   GT+ +  +  D+ G+  G A V F   A+A++   +  
Sbjct: 77  LLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYK 136

Query: 391 ESELHGRQI-------KVAPKRT-----NVPGLKQPRGGRGF 302
              L GR +       ++ P+R      N  G+ + RG  GF
Sbjct: 137 GVPLDGRPMDIQLVASQIDPQRRPAQSGNRGGMTRSRGSGGF 178
to top
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export|
           factor-binding protein 1) (REF1-I) (Ally of AML-1 and
           LEF-1) (Aly/REF)
          Length = 254

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFV-EAEAIQEAVKLS 392
           + V N+D+  +  ++Q+ F   GT+ +  +  D+ G+  G A V F  +A+A++   + +
Sbjct: 106 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 165

Query: 391 ESELHGRQIKVAPKRTNVPGLKQP-----RGG 311
              L GR + +    + +   ++P     RGG
Sbjct: 166 GVPLDGRPMNIQLVTSQIDTQRRPAQSINRGG 197
to top
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I|
          Length = 219

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVKLSE 389
           +FVGN+      E + Q F+   ++ +  ++ D+ G+ +GF +V F +++   +A +   
Sbjct: 32  LFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFVSFKDSDQFLKAWREKN 91

Query: 388 SELHG-RQIKVAPKRTNV 338
            +  G R +K++   ++V
Sbjct: 92  GKYIGSRPVKLSRATSDV 109
to top
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -2

Query: 589 EEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKF-GQPKGFAYVEFVEAEAI 413
           E     +V+VG +D   +   + + F   G V    +  D+  GQ +G+ +VEF+  E  
Sbjct: 8   ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67

Query: 412 QEAVKLSES-ELHGRQIKV 359
             A+K+    +L+G+ I+V
Sbjct: 68  DYAIKIMNMIKLYGKPIRV 86
to top
>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein|
           15) (One-twenty two protein)
          Length = 977

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
 Frame = -2

Query: 625 GGDPNATTSEAKEEMD---SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQP 455
           G  P     E   E D   +R++F+GN+D   T  ++++ F+  G +  V I     GQ 
Sbjct: 354 GAAPFREVDEISPEDDQRANRTLFLGNLDITVTESDLRRAFDRFGVITEVDIKRPSRGQT 413

Query: 454 KGFAYVEF 431
             + +++F
Sbjct: 414 STYGFLKF 421
to top
>CB017_HUMAN (Q8NC44) Protein C2orf17|
          Length = 543

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 341 RSWVEAAPRGPRIQPIWRPPLHEAISTTVLQSLWWLWESSQVPP---TAQALLLKFLL 177
           R W        R+  +W  PLH  ++   L  L+WL  SS + P    + +LL  FLL
Sbjct: 61  RGWEAVLAAAQRLL-VWEKPLHSLVTAAALNGLFWLLSSSSLRPFFLLSVSLLAYFLL 117
to top
>NOP12_GIBZE (Q4IQW0) Nucleolar protein 12|
          Length = 559

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = -2

Query: 538 TPEEVQQH----FNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAVKLSESELHG 374
           TP ++++     F++ G V  V ++ D K    KGFAYV+F +A  ++ A+ L   +   
Sbjct: 360 TPSDIEEGLWRTFSTQGKVENVRVVRDSKTRVGKGFAYVQFYDANDVEAALLLDGKKFP- 418

Query: 373 RQIKVAPKRTNVPGLKQPR 317
               + P++  V   K PR
Sbjct: 419 ---PMLPRKLRVTRAKDPR 434
to top
>NOP3_YEAST (Q01560) Nucleolar protein 3 (Mitochondrial targeting suppressor 1|
           protein) (Nuclear polyadenylated RNA-binding protein 1)
          Length = 414

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 27/95 (28%), Positives = 41/95 (43%)
 Frame = -2

Query: 637 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQ 458
           + M G  P     E   E+ +  +FV          E+ + F   G +  V IL      
Sbjct: 106 EHMHGRPPMHHRQEG--ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILN----- 158

Query: 457 PKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAP 353
             GFA+VEF EAE+  +A++    E+HG+     P
Sbjct: 159 --GFAFVEFEEAESAAKAIE----EVHGKSFANQP 187
to top
>CB017_MOUSE (Q6NS82) Protein C2orf17 homolog|
          Length = 541

 Score = 33.9 bits (76), Expect = 0.45
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 341 RSWVEAAPRGPRIQPIWRPPLHEAISTTVLQSLWWLWESSQVPP---TAQALLLKFLL 177
           R W        R+  +W  PLH  ++   L  L+WL  SS + P    + +LL  FLL
Sbjct: 56  RGWEAVLAAAQRLL-VWEKPLHSLVTAATLNGLFWLLSSSSLRPFFLLSISLLTYFLL 112
to top
>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 18/61 (29%), Positives = 35/61 (57%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK 398
           SR+VF+GN+  +   +E+++ F   G +  + IL+      K  A+V F+    I++A+K
Sbjct: 298 SRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILS-----KKNIAFVHFLN---IRDAIK 349

Query: 397 L 395
           +
Sbjct: 350 V 350
to top
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 401
           R ++VG +      + +   F   G +  + I  D +  + +GFA+VEF  AE    A+ 
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 400 KLSESELHGRQIKV 359
            ++ESEL GR I+V
Sbjct: 66  NMNESELFGRTIRV 79
to top
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33)
          Length = 301

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = -2

Query: 574 RSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTD-KFGQPKGFAYVEFVEAEAIQEAV- 401
           R ++VG +      + +   F   G +  + I  D +  + +GFA+VEF  AE    A+ 
Sbjct: 6   RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 65

Query: 400 KLSESELHGRQIKV 359
            ++ESEL GR I+V
Sbjct: 66  NMNESELFGRTIRV 79
to top
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein|
           (Nucleolar protein interacting with the FHA domain of
           pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34)
          Length = 293

 Score = 33.5 bits (75), Expect = 0.59
 Identities = 21/92 (22%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
 Frame = -2

Query: 637 KEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDK-FG 461
           KE+       T  + +E++    V+V ++       ++  +F+  GTV R  +   K  G
Sbjct: 24  KEVAQVRKRITQRKKQEQLTPGVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTG 83

Query: 460 QPKGFAYVEFVEAEAIQEAVKLSESELHGRQI 365
             KG+A+VEF   +  +   +   + L G ++
Sbjct: 84  NSKGYAFVEFESEDVAKIVAETMNNYLFGERL 115
to top
>RBP1_DROME (Q02427) RNA-binding protein 1|
          Length = 144

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 392
           V+VGN+  + +  E++  F   G +  V +  +    P GFA+VEF +    ++A + L 
Sbjct: 13  VYVGNLGSSASKHEIEGAFAKYGPLRNVWVARN----PPGFAFVEFEDRRDAEDATRALD 68

Query: 391 ESELHGRQIKV 359
            +   G +I+V
Sbjct: 69  GTRCCGTRIRV 79
to top
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)|
          Length = 419

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
 Frame = -2

Query: 631 MQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPK 452
           + G   N   S+ K +  ++ + VGN+  +CT +E++  F   G V    I+ D      
Sbjct: 60  LNGMAMNVEMSKGKPKTSTK-LHVGNISSSCTNQELRAKFEEYGPVVECDIVKD------ 112

Query: 451 GFAYVEFVEAEAIQEAVK-LSESELHGR--QIKVAPKR-TNVPGLKQPRG 314
            +A+V     E   EA+  L  +   G+   +K++  R    PG+ +  G
Sbjct: 113 -YAFVHMERVEDAMEAISGLDNTAFQGKLMSVKLSTSRLRTAPGMGERTG 161
to top
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase|
           E) (Rotamase E) (Cyclophilin E)
          Length = 273

 Score = 33.1 bits (74), Expect = 0.77
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = -2

Query: 454 KGFAYVEFVEAEAIQEAV-KLSESELHGRQIKV 359
           +GFA+VEF E E    A+  ++ESE+ GR I+V
Sbjct: 11  RGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRV 43
to top
>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
 Frame = -2

Query: 568 VFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAVK-LS 392
           V+VGN+       E+++ F+  G +  V I  +    P GFA+VEF +    ++AV+ L 
Sbjct: 13  VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLD 68

Query: 391 ESELHGRQIKV 359
              + G +++V
Sbjct: 69  GKVICGSRVRV 79
to top
>NONO_MOUSE (Q99K48) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 473

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           S S+ V N+    + E +++ F+  G V R  ++ D  G+P G   VEF    A ++A+
Sbjct: 149 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 207
to top
>LARK_DROME (Q94901) RNA-binding protein lark|
          Length = 352

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
 Frame = -2

Query: 664 LREMQAKVAKEMQGGDPNATTSEAKEEMDSRSVFVGNVDYACTPEEVQQHFNSCGTVNRV 485
           L E   KV        PN  T++         +FVGN+       EV++ F   GTV   
Sbjct: 65  LNEFAIKVEAAKSRRAPNTPTTK---------IFVGNLTDKTRAPEVRELFQKYGTVVEC 115

Query: 484 TILTDKFGQPKGFAYVEFVEAEAIQEAVKLSESELHGRQIKVAPKRTNVPGLK-QPRGGR 308
            I+ +      GF +++ V    +Q+A+K    EL+GR +   P +  V   + +P+ G 
Sbjct: 116 DIVRN-----YGFVHLDCV--GDVQDAIK----ELNGRVVDGQPLKVQVSTSRVRPKPGM 164

Query: 307 G 305
           G
Sbjct: 165 G 165
to top
>NONO_PONPY (Q5RFL9) Non-POU domain-containing octamer-binding protein (NonO|
           protein)
          Length = 471

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = -2

Query: 577 SRSVFVGNVDYACTPEEVQQHFNSCGTVNRVTILTDKFGQPKGFAYVEFVEAEAIQEAV 401
           S S+ V N+    + E +++ F+  G V R  ++ D  G+P G   VEF    A ++A+
Sbjct: 147 SASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKAL 205


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,813,104
Number of Sequences: 219361
Number of extensions: 1562419
Number of successful extensions: 5089
Number of sequences better than 10.0: 274
Number of HSP's better than 10.0 without gapping: 4783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5041
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top