ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15c13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 38 7.9
2ref|XM_538867.2| PREDICTED: Canis familiaris similar to Inositol... 38 7.9
3gb|AC108797.8| Mus musculus chromosome 3, clone RP23-349M18, com... 38 7.9

>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 74     catcaaggagatcaccagg 92
              |||||||||||||||||||
Sbjct: 194978 catcaaggagatcaccagg 194996



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>ref|XM_538867.2| PREDICTED: Canis familiaris similar to Inositol 1,4,5-trisphosphate
           receptor type 3 (Type 3 inositol 1,4,5-trisphosphate
           receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform
           3) (InsP3R3), transcript variant 1 (LOC481746), mRNA
          Length = 8855

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 32  gttgcagcatgcagcccag 50
           |||||||||||||||||||
Sbjct: 276 gttgcagcatgcagcccag 294



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>gb|AC108797.8| Mus musculus chromosome 3, clone RP23-349M18, complete sequence
          Length = 208211

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     gagatcaccaggaattttc 99
              |||||||||||||||||||
Sbjct: 162741 gagatcaccaggaattttc 162723


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 832,322
Number of Sequences: 3902068
Number of extensions: 832322
Number of successful extensions: 44471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44460
Number of HSP's gapped (non-prelim): 11
length of query: 163
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 141
effective length of database: 17,147,199,772
effective search space: 2417755167852
effective search space used: 2417755167852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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