ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009491.1| Triticum aestivum clone wr1.pk0067.h2:fis, full i... 448 e-123
2ref|NM_193854.1| Oryza sativa (japonica cultivar-group), predic... 153 6e-34
3dbj|AK101893.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 6e-34
4gb|AY105512.1| Zea mays PCO123869 mRNA sequence 129 9e-27
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
6dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
7dbj|AP003198.3| Oryza sativa (japonica cultivar-group) genomic D... 127 4e-26
8gb|BT018795.1| Zea mays clone EL01N0528A03.d mRNA sequence 113 6e-22
9gb|AY389603.1| Hyacinthus orientalis asparaginyl-tRNA synthetase... 62 2e-06
10ref|NM_105766.2| Arabidopsis thaliana SYNC1; ATP binding / aspar... 60 7e-06
11gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete se... 56 1e-04
12gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete s... 56 1e-04
13ref|NM_125051.2| Arabidopsis thaliana EMB2755; ATP binding / asp... 52 0.002
14gb|AY062109.1| Arabidopsis thaliana AT5g56680/MIK19_13 mRNA sequ... 52 0.002
15emb|BX830737.1|CNS0A1M7 Arabidopsis thaliana Full-length cDNA Co... 52 0.002
16gb|AF170909.1|AF170909 Arabidopsis thaliana SYNC1 protein mRNA, ... 52 0.002
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
18dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
19dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.027
20ref|XM_478119.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.11
21gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome... 44 0.43
22dbj|AK147401.1| Mus musculus cDNA, RIKEN full-length enriched li... 44 0.43
23dbj|AK051792.1| Mus musculus 12 days embryo spinal ganglion cDNA... 44 0.43
24ref|NM_053103.3| Mus musculus ectonucleoside triphosphate diphos... 44 0.43
25gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Can... 42 1.7
26gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.7
27emb|AL672157.5| Mouse DNA sequence from clone RP24-499M12 on chr... 42 1.7
28gb|AC115869.9| Mus musculus chromosome 1, clone RP24-330M24, com... 40 6.6
29ref|XM_721032.1| Plasmodium yoelii yoelii str. 17XNL asparaginyl... 40 6.6
30ref|XM_725294.1| Plasmodium yoelii yoelii str. 17XNL asparaginyl... 40 6.6
31emb|AL591662.6| Human DNA sequence from clone RP11-28P17 on chro... 40 6.6
32emb|AL445466.9| Human DNA sequence from clone RP11-453O22 on chr... 40 6.6
33gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Ca... 40 6.6
34gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Can... 40 6.6
35gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.6
36gb|AC005939.1|AC005939 Homo sapiens chromosome 17, clone hRPK.46... 40 6.6
37gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 40 6.6 
>gb|BT009491.1| Triticum aestivum clone wr1.pk0067.h2:fis, full insert mRNA sequence
          Length = 1617

 Score =  448 bits (226), Expect = e-123
 Identities = 360/405 (88%), Gaps = 5/405 (1%)
 Strand = Plus / Minus

                                                                        
Query: 91   aagacacgagacatatccagtgatntcagcatgtgtatacatatcaaaccaa----acgg 146
            ||||||||||||||||| | |||| |||||||| ||||| ||||||| | ||    ||||
Sbjct: 1440 aagacacgagacatatcaaatgatatcagcatgcgtatatatatcaatctaaccggacgg 1381

                                                                        
Query: 147  ccaaacactaatccaaaatcactaacgggatgtagaattaataatcntatatttcaaggc 206
            |||| ||||  | ||||||| |||||    ||||||||| |   || ||||| |||||||
Sbjct: 1380 ccaa-cacttcttcaaaatcgctaacaaagtgtagaattgacgttcttatatctcaaggc 1322

                                                                        
Query: 207  agaaatatgaaacccttcaaagatcagccctcccggggtatcttgggaacgggatgacat 266
            ||| || || | ||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct: 1321 agacatctgcagcccttcaaagatcggccctcccagggtatcttgggaatgggatgacat 1262

                                                                        
Query: 267  ctctgatgttctccaggccagtggcgaaaaggatcatcctctcaaacccnaggccgaatc 326
            ||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| |
Sbjct: 1261 ctctgatgttctccaggccggtggcgaaaaggatcatcctctcgaaccctaggccgaacc 1202

                                                                        
Query: 327  cgntgtgcttcacggagccaaagcgtcngaggtccaagtaccactcatacggctccagag 386
            || |||||||||| ||||||||||||| |||||||| |||||||||||| ||||||||||
Sbjct: 1201 cgctgtgcttcactgagccaaagcgtcggaggtccaggtaccactcatatggctccagag 1142

                                                                        
Query: 387  gaagatctgcgtccagtatcctttgcgtaagaatatcaagacgctnctccctttggcttc 446
            ||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct: 1141 gaagatccgcgtccagtatcctttgcttaagaatatcaagacgctcctccctttggcttc 1082

                                                         
Query: 447  caccgattaattcaccaaccttgggaacaagaacatccattgcag 491
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 caccgattaattcaccaaccttgggaacaagaacatccattgcag 1037



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 53/61 (86%), Gaps = 2/61 (3%)
 Strand = Plus / Minus

                                                                        
Query: 1    aatttacagaaagaagatgct-agcaccgataatacttc-attatctaatcttaaaacaa 58
            |||||||| |||||||||||| || ||| |||||||||| |   ||||||||||||||||
Sbjct: 1533 aatttacaaaaagaagatgctaaggaccaataatacttcaacgttctaatcttaaaacaa 1474

             
Query: 59   g 59
            |
Sbjct: 1473 g 1473
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>ref|NM_193854.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1680

 Score =  153 bits (77), Expect = 6e-34
 Identities = 217/265 (81%)
 Strand = Plus / Minus

                                                                        
Query: 227  agatcagccctcccggggtatcttgggaacgggatgacatctctgatgttctccaggcca 286
            |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||  |||
Sbjct: 1676 agatcagccctccctgggtatctagggaaggggatgacatctctgatgttctccaaacca 1617

                                                                        
Query: 287  gtggcgaaaaggatcatcctctcaaacccnaggccgaatccgntgtgcttcacggagcca 346
            ||||| ||||| ||||| || ||||| || |  || || ||  ||||||| || || |||
Sbjct: 1616 gtggcaaaaagaatcattctttcaaaacccaaaccaaaaccactgtgcttgacagatcca 1557

                                                                        
Query: 347  aagcgtcngaggtccaagtaccactcatacggctccagaggaagatctgcgtccagtatc 406
            ||||| | ||||||||||||||| ||||| ||||||| ||| |   | |||||  |||||
Sbjct: 1556 aagcggcggaggtccaagtaccattcatatggctccaaaggcaacccggcgtcttgtatc 1497

                                                                        
Query: 407  ctttgcgtaagaatatcaagacgctnctccctttggcttccaccgattaattcaccaacc 466
            |||    | ||||  || ||||| | |||||||||||||||||| |  || |||||||||
Sbjct: 1496 cttgttttgagaaggtccagacgttcctccctttggcttccaccaaccaactcaccaacc 1437

                                     
Query: 467  ttgggaacaagaacatccattgcag 491
            ||||| |||||||||||||| ||||
Sbjct: 1436 ttgggcacaagaacatccatagcag 1412
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>dbj|AK101893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070O21, full
            insert sequence
          Length = 2115

 Score =  153 bits (77), Expect = 6e-34
 Identities = 217/265 (81%)
 Strand = Plus / Minus

                                                                        
Query: 227  agatcagccctcccggggtatcttgggaacgggatgacatctctgatgttctccaggcca 286
            |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||  |||
Sbjct: 1828 agatcagccctccctgggtatctagggaaggggatgacatctctgatgttctccaaacca 1769

                                                                        
Query: 287  gtggcgaaaaggatcatcctctcaaacccnaggccgaatccgntgtgcttcacggagcca 346
            ||||| ||||| ||||| || ||||| || |  || || ||  ||||||| || || |||
Sbjct: 1768 gtggcaaaaagaatcattctttcaaaacccaaaccaaaaccactgtgcttgacagatcca 1709

                                                                        
Query: 347  aagcgtcngaggtccaagtaccactcatacggctccagaggaagatctgcgtccagtatc 406
            ||||| | ||||||||||||||| ||||| ||||||| ||| |   | |||||  |||||
Sbjct: 1708 aagcggcggaggtccaagtaccattcatatggctccaaaggcaacccggcgtcttgtatc 1649

                                                                        
Query: 407  ctttgcgtaagaatatcaagacgctnctccctttggcttccaccgattaattcaccaacc 466
            |||    | ||||  || ||||| | |||||||||||||||||| |  || |||||||||
Sbjct: 1648 cttgttttgagaaggtccagacgttcctccctttggcttccaccaaccaactcaccaacc 1589

                                     
Query: 467  ttgggaacaagaacatccattgcag 491
            ||||| |||||||||||||| ||||
Sbjct: 1588 ttgggcacaagaacatccatagcag 1564
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>gb|AY105512.1| Zea mays PCO123869 mRNA sequence
          Length = 2025

 Score =  129 bits (65), Expect = 9e-27
 Identities = 214/265 (80%)
 Strand = Plus / Minus

                                                                        
Query: 227  agatcagccctcccggggtatcttgggaacgggatgacatctctgatgttctccaggcca 286
            ||||||||||| || ||||| |||||||| || || |||||||||||||||||||  || 
Sbjct: 1815 agatcagcccttcctgggtaccttgggaagggtataacatctctgatgttctccattccg 1756

                                                                        
Query: 287  gtggcgaaaaggatcatcctctcaaacccnaggccgaatccgntgtgcttcacggagcca 346
            || || || || |||||||| ||||| || |  || || ||  ||||||| || || |||
Sbjct: 1755 gttgcaaatagaatcatcctttcaaaacccaacccaaaaccactgtgctttacagatcca 1696

                                                                        
Query: 347  aagcgtcngaggtccaagtaccactcatacggctccagaggaagatctgcgtccagtatc 406
            ||||| | ||||||||||||||| ||||| || |||| ||| ||  | || || ||||||
Sbjct: 1695 aagcgacggaggtccaagtaccattcatagggttccaaaggcaggccagcatcaagtatc 1636

                                                                        
Query: 407  ctttgcgtaagaatatcaagacgctnctccctttggcttccaccgattaattcaccaacc 466
            || ||  | |||| ||| |  || | |||||||||||||||||| || ||||||||||||
Sbjct: 1635 ctctgtttcagaacatctaaccgttcctccctttggcttccaccaatcaattcaccaacc 1576

                                     
Query: 467  ttgggaacaagaacatccattgcag 491
            || || |||||||||||||||||||
Sbjct: 1575 ttaggcacaagaacatccattgcag 1551
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/157 (84%)
 Strand = Plus / Plus

                                                                            
Query: 227      agatcagccctcccggggtatcttgggaacgggatgacatctctgatgttctccaggcca 286
                |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||  |||
Sbjct: 15339051 agatcagccctccctgggtatctagggaaggggatgacatctctgatgttctccaaacca 15339110

                                                                            
Query: 287      gtggcgaaaaggatcatcctctcaaacccnaggccgaatccgntgtgcttcacggagcca 346
                ||||| ||||| ||||| || ||||| || |  || || ||  ||||||| || || |||
Sbjct: 15339111 gtggcaaaaagaatcattctttcaaaacccaaaccaaaaccactgtgcttgacagatcca 15339170

                                                     
Query: 347      aagcgtcngaggtccaagtaccactcatacggctcca 383
                ||||| | ||||||||||||||| ||||| |||||||
Sbjct: 15339171 aagcggcggaggtccaagtaccattcatatggctcca 15339207



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                 
Query: 425      agacgctnctccctttggcttccaccgattaattcaccaaccttgggaa 473
                ||||| | |||||||||||||||||| |  || ||||||||||| ||||
Sbjct: 15339701 agacgttcctccctttggcttccaccaaccaactcaccaacctttggaa 15339749



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 464      accttgggaacaagaacatccattgcag 491
                |||||||| |||||||||||||| ||||
Sbjct: 15340029 accttgggcacaagaacatccatagcag 15340056
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>dbj|AP003199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1045D11
          Length = 142320

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/157 (84%)
 Strand = Plus / Plus

                                                                         
Query: 227   agatcagccctcccggggtatcttgggaacgggatgacatctctgatgttctccaggcca 286
             |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||  |||
Sbjct: 16592 agatcagccctccctgggtatctagggaaggggatgacatctctgatgttctccaaacca 16651

                                                                         
Query: 287   gtggcgaaaaggatcatcctctcaaacccnaggccgaatccgntgtgcttcacggagcca 346
             ||||| ||||| ||||| || ||||| || |  || || ||  ||||||| || || |||
Sbjct: 16652 gtggcaaaaagaatcattctttcaaaacccaaaccaaaaccactgtgcttgacagatcca 16711

                                                  
Query: 347   aagcgtcngaggtccaagtaccactcatacggctcca 383
             ||||| | ||||||||||||||| ||||| |||||||
Sbjct: 16712 aagcggcggaggtccaagtaccattcatatggctcca 16748



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 425   agacgctnctccctttggcttccaccgattaattcaccaaccttgggaa 473
             ||||| | |||||||||||||||||| |  || ||||||||||| ||||
Sbjct: 17242 agacgttcctccctttggcttccaccaaccaactcaccaacctttggaa 17290



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 464   accttgggaacaagaacatccattgcag 491
             |||||||| |||||||||||||| ||||
Sbjct: 17570 accttgggcacaagaacatccatagcag 17597
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>dbj|AP003198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1039D07
          Length = 135301

 Score =  127 bits (64), Expect = 4e-26
 Identities = 133/157 (84%)
 Strand = Plus / Plus

                                                                         
Query: 227   agatcagccctcccggggtatcttgggaacgggatgacatctctgatgttctccaggcca 286
             |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||  |||
Sbjct: 80410 agatcagccctccctgggtatctagggaaggggatgacatctctgatgttctccaaacca 80469

                                                                         
Query: 287   gtggcgaaaaggatcatcctctcaaacccnaggccgaatccgntgtgcttcacggagcca 346
             ||||| ||||| ||||| || ||||| || |  || || ||  ||||||| || || |||
Sbjct: 80470 gtggcaaaaagaatcattctttcaaaacccaaaccaaaaccactgtgcttgacagatcca 80529

                                                  
Query: 347   aagcgtcngaggtccaagtaccactcatacggctcca 383
             ||||| | ||||||||||||||| ||||| |||||||
Sbjct: 80530 aagcggcggaggtccaagtaccattcatatggctcca 80566



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 425   agacgctnctccctttggcttccaccgattaattcaccaaccttgggaa 473
             ||||| | |||||||||||||||||| |  || ||||||||||| ||||
Sbjct: 81060 agacgttcctccctttggcttccaccaaccaactcaccaacctttggaa 81108



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 464   accttgggaacaagaacatccattgcag 491
             |||||||| |||||||||||||| ||||
Sbjct: 81388 accttgggcacaagaacatccatagcag 81415
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>gb|BT018795.1| Zea mays clone EL01N0528A03.d mRNA sequence
          Length = 1941

 Score =  113 bits (57), Expect = 6e-22
 Identities = 212/265 (80%)
 Strand = Plus / Plus

                                                                       
Query: 227 agatcagccctcccggggtatcttgggaacgggatgacatctctgatgttctccaggcca 286
           ||||||||||| || ||||| |||||||| || || |||||||||||||||||||  || 
Sbjct: 186 agatcagcccttcctgggtaccttgggaagggtataacatctctgatgttctccattccg 245

                                                                       
Query: 287 gtggcgaaaaggatcatcctctcaaacccnaggccgaatccgntgtgcttcacggagcca 346
           || || || || |||||||| ||||| || |  || || ||  || |||| || || |||
Sbjct: 246 gttgcaaatagaatcatcctttcaaaacccaatccaaaaccactgggctttacagatcca 305

                                                                       
Query: 347 aagcgtcngaggtccaagtaccactcatacggctccagaggaagatctgcgtccagtatc 406
           ||||| | |||| |||||||||| ||||| || |||| ||| ||  | || || ||||||
Sbjct: 306 aagcgacggagggccaagtaccattcatagggttccaaaggcaggccagcatcaagtatc 365

                                                                       
Query: 407 ctttgcgtaagaatatcaagacgctnctccctttggcttccaccgattaattcaccaacc 466
           || ||  | |||| ||| |  || | |||||||||||||||||| || ||||||||||||
Sbjct: 366 ctctgtttcagaacatctaaccgttcctccctttggcttccaccaatcaattcaccaacc 425

                                    
Query: 467 ttgggaacaagaacatccattgcag 491
           || || |||||||||||||||||||
Sbjct: 426 ttaggcacaagaacatccattgcag 450
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>gb|AY389603.1| Hyacinthus orientalis asparaginyl-tRNA synthetase mRNA, partial cds
          Length = 520

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 58/67 (86%)
 Strand = Plus / Minus

                                                                       
Query: 225 aaagatcagccctcccggggtatcttgggaacgggatgacatctctgatgttctccaggc 284
           ||||||||||||| || |||||||| ||||| || ||||| ||||||||||| || | ||
Sbjct: 265 aaagatcagcccttcctgggtatctggggaaaggaatgacgtctctgatgttgtcgatgc 206

                  
Query: 285 cagtggc 291
           |||||||
Sbjct: 205 cagtggc 199
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>ref|NM_105766.2| Arabidopsis thaliana SYNC1; ATP binding / asparagine-tRNA ligase/
            aspartate-tRNA ligase/ nucleic acid binding / tRNA ligase
            AT1G70980 (SYNC1) mRNA, complete cds
          Length = 1945

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                      
Query: 434  tccctttggcttccaccgattaattcaccaaccttgggaacaagaacatccattgcag 491
            ||||||||||||||||| || | ||| |||||||| |||||||| |||||||| ||||
Sbjct: 1505 tccctttggcttccaccaatgagttctccaacctttggaacaaggacatccatggcag 1448
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>gb|AC144766.18| Medicago truncatula clone mth2-17c2, complete sequence
          Length = 92099

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 69/83 (83%)
 Strand = Plus / Minus

                                                                         
Query: 245   tatcttgggaacgggatgacatctctgatgttctccaggccagtggcgaaaaggatcatc 304
             |||| |||||| || || |||||||| || || ||||||||||| || ||||| ||||||
Sbjct: 20072 tatcgtgggaagggaatcacatctctaatattttccaggccagtagcaaaaagaatcatc 20013

                                    
Query: 305   ctctcaaacccnaggccgaatcc 327
             || ||||| || || ||||||||
Sbjct: 20012 ctttcaaagccaagaccgaatcc 19990



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                      
Query: 427   acgctnctccctttggcttccaccgattaattcaccaacct 467
             ||||| |||||||||||||||||| ||||| || |||||||
Sbjct: 19763 acgctcctccctttggcttccaccaattaactctccaacct 19723
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>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence
          Length = 110895

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 69/83 (83%)
 Strand = Plus / Plus

                                                                         
Query: 245   tatcttgggaacgggatgacatctctgatgttctccaggccagtggcgaaaaggatcatc 304
             |||| |||||| || || |||||||| || || | |||||||||||| ||||| ||||||
Sbjct: 57978 tatcgtgggaagggaatcacatctctaatatttttcaggccagtggcaaaaagaatcatc 58037

                                    
Query: 305   ctctcaaacccnaggccgaatcc 327
             || ||||| || || ||||||||
Sbjct: 58038 ctttcaaagccaagaccgaatcc 58060
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>ref|NM_125051.2| Arabidopsis thaliana EMB2755; ATP binding / asparagine-tRNA ligase/
            aspartate-tRNA ligase/ nucleic acid binding / tRNA ligase
            AT5G56680 (EMB2755) mRNA, complete cds
          Length = 1976

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 434  tccctttggcttccaccgattaattcaccaaccttgggaacaagaacatccattgcag 491
            ||||||||||||||||| || | ||| |||||||| ||||| || |||||||| ||||
Sbjct: 1610 tccctttggcttccaccaatgagttctccaacctttggaacgaggacatccatggcag 1553
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>gb|AY062109.1| Arabidopsis thaliana AT5g56680/MIK19_13 mRNA sequence
          Length = 1966

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 434  tccctttggcttccaccgattaattcaccaaccttgggaacaagaacatccattgcag 491
            ||||||||||||||||| || | ||| |||||||| ||||| || |||||||| ||||
Sbjct: 1611 tccctttggcttccaccaatgagttctccaacctttggaacgaggacatccatggcag 1554
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>emb|BX830737.1|CNS0A1M7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS19ZC05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1860

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 434  tccctttggcttccaccgattaattcaccaaccttgggaacaagaacatccattgcag 491
            ||||||||||||||||| || | ||| |||||||| ||||| || |||||||| ||||
Sbjct: 1553 tccctttggcttccaccaatgagttctccaacctttggaacgaggacatccatggcag 1496
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>gb|AF170909.1|AF170909 Arabidopsis thaliana SYNC1 protein mRNA, complete cds
          Length = 1719

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                      
Query: 434  tccctttggcttccaccgattaattcaccaaccttgggaacaagaacatccattgcag 491
            ||||||||||||||||| || | ||| |||||||| ||||| || |||||||| ||||
Sbjct: 1508 tccctttggcttccaccaatgagttctccaacctttggaacgaggacatccatggcag 1451
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                               
Query: 421      atcaagacgctnctccctttggcttccaccgattaattcaccaacct 467
                ||||||||| |  ||||||||||||||||| || | |||||||||||
Sbjct: 17790806 atcaagacgttcttccctttggcttccaccaatgagttcaccaacct 17790760
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>dbj|AP004348.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0683C09
          Length = 185139

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 421   atcaagacgctnctccctttggcttccaccgattaattcaccaacct 467
             ||||||||| |  ||||||||||||||||| || | |||||||||||
Sbjct: 17798 atcaagacgttcttccctttggcttccaccaatgagttcaccaacct 17752
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>dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1753_E03
          Length = 126734

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 421   atcaagacgctnctccctttggcttccaccgattaattcaccaacct 467
             ||||||||| |  ||||||||||||||||| || | |||||||||||
Sbjct: 95559 atcaagacgttcttccctttggcttccaccaatgagttcaccaacct 95513
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>ref|XM_478119.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1755

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 421  atcaagacgctnctccctttggcttccaccgattaattcaccaacc 466
            ||||||||| |  ||||||||||||||||| || | ||||||||||
Sbjct: 1557 atcaagacgttcttccctttggcttccaccaatgagttcaccaacc 1512
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>gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome 19, complete sequence
          Length = 185192

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 208    gaaatatgaaacccttcaaaga 229
              ||||||||||||||||||||||
Sbjct: 102437 gaaatatgaaacccttcaaaga 102458
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>dbj|AK147401.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1032P19 product:ectonucleoside triphosphate
            diphosphohydrolase, full insert sequence
          Length = 5756

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 208  gaaatatgaaacccttcaaaga 229
            ||||||||||||||||||||||
Sbjct: 5627 gaaatatgaaacccttcaaaga 5606
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>dbj|AK051792.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130084L13 product:SIMILAR TO
            COX15 HOMOLOG, CYTOCHROME C OXIDASE ASSEMBLY PROTEIN
            (YEAST) (FRAGMENT) homolog [Mus musculus], full insert
            sequence
          Length = 4698

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 208  gaaatatgaaacccttcaaaga 229
            ||||||||||||||||||||||
Sbjct: 4382 gaaatatgaaacccttcaaaga 4403
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>ref|NM_053103.3| Mus musculus ectonucleoside triphosphate diphosphohydrolase 7
            (Entpd7), mRNA
          Length = 5756

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 208  gaaatatgaaacccttcaaaga 229
            ||||||||||||||||||||||
Sbjct: 5627 gaaatatgaaacccttcaaaga 5606
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>gb|AC091607.11| Homo sapiens 3 BAC RP11-118D22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 175447

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 355   gaggtccaagtaccactcatacggc 379
             ||||| |||||||||||||||||||
Sbjct: 28142 gaggtacaagtaccactcatacggc 28166
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 247     tcttgggaacgggatgacatc 267
               |||||||||||||||||||||
Sbjct: 2313675 tcttgggaacgggatgacatc 2313655
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>emb|AL672157.5| Mouse DNA sequence from clone RP24-499M12 on chromosome 2, complete
             sequence
          Length = 67987

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 370   ctcatacggctccagaggaag 390
             |||||||||||||||||||||
Sbjct: 31802 ctcatacggctccagaggaag 31782
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>gb|AC115869.9| Mus musculus chromosome 1, clone RP24-330M24, complete sequence
          Length = 158656

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 217   aacccttcaaagatcagccctccc 240
             ||||||||||| ||||||||||||
Sbjct: 58307 aacccttcaaacatcagccctccc 58330
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>ref|XM_721032.1| Plasmodium yoelii yoelii str. 17XNL asparaginyl-tRNA synthetase
            (PY05639) partial mRNA
          Length = 1731

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  ttgggaacaagaacatccat 486
            ||||||||||||||||||||
Sbjct: 1487 ttgggaacaagaacatccat 1468
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>ref|XM_725294.1| Plasmodium yoelii yoelii str. 17XNL asparaginyl-tRNA synthetase
            (PY02504) partial mRNA
          Length = 1761

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 467  ttgggaacaagaacatccat 486
            ||||||||||||||||||||
Sbjct: 1442 ttgggaacaagaacatccat 1423
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>emb|AL591662.6| Human DNA sequence from clone RP11-28P17 on chromosome 9 Contains part of
              the TMC1 gene for transmembrane cochlear-expressed 1, a
              ribosomal protein S20 (RPS20) pseudogene and a ribosomal
              protein S27a (RPS27A) pseudogene, complete sequence
          Length = 170815

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    gatgacatctctgatgttct 278
              ||||||||||||||||||||
Sbjct: 156681 gatgacatctctgatgttct 156700
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>emb|AL445466.9| Human DNA sequence from clone RP11-453O22 on chromosome 1 Contains a
             novel pseudogne, complete sequence
          Length = 164042

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 208   gaaatatgaaacccttcaaa 227
             ||||||||||||||||||||
Sbjct: 51968 gaaatatgaaacccttcaaa 51987
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>gb|AC153550.10| Mus musculus 10 BAC RP23-250H23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 168208

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 107    ccagtgatntcagcatgtgtata 129
              |||||||| ||||||||||||||
Sbjct: 154205 ccagtgatttcagcatgtgtata 154227
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>gb|AC153549.5| Mus musculus 10 BAC RP23-222O23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 217249

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 107   ccagtgatntcagcatgtgtata 129
             |||||||| ||||||||||||||
Sbjct: 24396 ccagtgatttcagcatgtgtata 24418
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 283     gccagtggcgaaaaggatca 302
               ||||||||||||||||||||
Sbjct: 3025919 gccagtggcgaaaaggatca 3025938
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>gb|AC005939.1|AC005939 Homo sapiens chromosome 17, clone hRPK.467_K_17, complete sequence
          Length = 179485

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 88    acaaagacacgagacatatccagt 111
             |||||||||| |||||||||||||
Sbjct: 47466 acaaagacaccagacatatccagt 47489
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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 259     gatgacatctctgatgttct 278
               ||||||||||||||||||||
Sbjct: 1612292 gatgacatctctgatgttct 1612273


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,927,120
Number of Sequences: 3902068
Number of extensions: 3927120
Number of successful extensions: 77783
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77616
Number of HSP's gapped (non-prelim): 160
length of query: 491
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 469
effective length of database: 17,147,199,772
effective search space: 8042036693068
effective search space used: 8042036693068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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