>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 34/104 (32%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
 Frame = +3

Query: 273 KRSSLPREPSTTLNDPDKEPAALLERLSLMKPAHVRSHPGPRMQSP-LAVRHQTGSSAQG 449
           +R++ P  P      P   P     R+S   P   RS P  + +SP L+ +H+ GSS   
Sbjct: 612 RRTASPPPPPKRRASPSPPPK---RRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSS--- 665

Query: 450 APSGSLNS*AAV*WKVLAHLRGPRPRQLQLSSDPHPLMSLARTS 581
            PS S    A        H   PRPR  Q SS P P+   A +S
Sbjct: 666 -PSRSTRE-ARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSS 707

>TPS2_YEAST (P31688) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP) (Trehalose synthase complex catalytic
           subunit TPS2)
          Length = 896

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 14/75 (18%)
 Frame = +2

Query: 380 ITPWTQDAVSLSCS--------------SSDWEQRPRSSEWKFEFLSSSLMEGPSASARS 517
           + PW   AV+ S +              S  W++ P   +W  +FLSS L E  S++   
Sbjct: 491 VNPWDSVAVAKSINMALKLDKEEKSNLESKLWKEVPTIQDWTNKFLSS-LKEQASSNDDM 549

Query: 518 PTKATPAFVRPSSLD 562
             K TPA  RP  L+
Sbjct: 550 ERKMTPALNRPVLLE 564

>LCMT1_USTMA (Q4P4G2) Leucine carboxyl methyltransferase 1 (EC 2.1.1.-) (Protein|
           phosphatase methyltransferase 1)
          Length = 536

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +3

Query: 279 SSLPREPSTTLNDPDKEPAALLERLSLMKPAHVRSHPGPRMQSPLAVRHQTGSSAQGAPS 458
           S + R P   L  P  +     ER  +  P  V   PGP +   +AVR +T ++++ AP+
Sbjct: 20  SEIGRAPERRLRIPQNQLRNADERCEIRSPQPV---PGPGLPRSIAVRTETAATSKDAPA 76

>HNF1A_HUMAN (P20823) Hepatocyte nuclear factor 1-alpha (HNF-1A) (Liver-specific|
           transcription factor LF-B1) (LFB1) (Transcription factor
           1) (TCF-1)
          Length = 631

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +3

Query: 249 FHNNVSSGKRSSL--PREPSTTLNDPDKEPAALLERLSLMKPAHVRSHPGPRMQSPLAVR 422
           F ++  +   S L  P   +TTL+ P ++PA +      ++PAH R    P + S   V 
Sbjct: 543 FTSDTEASSESGLHTPASQATTLHVPSQDPAGIQH----LQPAH-RLSASPTVSSSSLVL 597

Query: 423 HQTGSSAQG 449
           +Q+  S+ G
Sbjct: 598 YQSSDSSNG 606


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,929,923
Number of Sequences: 219361
Number of extensions: 2233234
Number of successful extensions: 6163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6151
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)