ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4,... 94 4e-16
2emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 94 4e-16
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 94 4e-16
4dbj|AK101840.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
5dbj|AK067306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 4e-16
6ref|XM_473109.1| Oryza sativa (japonica cultivar-group), predic... 88 3e-14
7gb|AY109155.1| Zea mays PCO096202 mRNA sequence 84 4e-13
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
9dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
10dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic D... 56 9e-05
11dbj|AK120120.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
12dbj|AK067382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
13ref|XM_719883.1| Plasmodium yoelii yoelii str. 17XNL 235 kDa rho... 44 0.34
14emb|CR388054.11| Zebrafish DNA sequence from clone CH211-82E18 i... 40 5.3
15gb|AC126682.3| Mus musculus BAC clone RP23-8E3 from 15, complete... 40 5.3
16emb|AL845439.5| Human DNA sequence from clone DAQB-215D11 on chr... 40 5.3
17emb|BX088647.3| Human DNA sequence from clone DASS-90B3 on chrom... 40 5.3
18emb|AL671859.3| Human DNA sequence from clone XXbac-218N7 on chr... 40 5.3
19emb|AL669914.2| Human DNA sequence from clone XXbac-250I8 on chr... 40 5.3
20emb|BX927229.6| Human DNA sequence from clone DAMA-377D17 on chr... 40 5.3
21emb|CR759960.3| Human DNA sequence from clone DAAP-65D20 on chro... 40 5.3
22emb|CR759763.2| Human DNA sequence from clone DAMC-182C13 on chr... 40 5.3
23dbj|AB210196.1| Pan troglodytes ZNRD1, PPP1R11, RNF genes for zi... 40 5.3
24dbj|AB210195.1| Pan troglodytes ZNRD1, PPP1R11, RNF39 genes for ... 40 5.3
25dbj|AB202082.1| Homo sapiens ZNRD1, PPP1R11, RNF39 genes for zin... 40 5.3
26emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in ... 40 5.3
27emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in l... 40 5.3
28dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 5.3
29dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility co... 40 5.3
30emb|BX005350.6| Zebrafish DNA sequence from clone DKEY-58C8 in l... 40 5.3
31emb|CR942385.2| Xenopus tropicalis finished cDNA, clone TGas136l07 40 5.3
32dbj|AB088087.1| Homo sapiens HCGVII, HTEX4,HTEX6A, HCGV, HZFW1, ... 40 5.3
33gb|U53588.1|HSU53588 Homo sapiens MHC class 1 region 40 5.3
34gb|AC004201.1|AC004201 Homo sapiens clone UWGC:y2c163 from 6p21,... 40 5.3
35dbj|AB023055.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 5.3
36dbj|AB023054.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA... 40 5.3

>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11,
              complete sequence
          Length = 143582

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 125/154 (81%)
 Strand = Plus / Plus

                                                                          
Query: 242    attggttagcgtcgatcgccgngccggaccttgcctgcnagatccggttcgcgtanatgg 301
              |||||||||| || ||||  | ||| |||||||| ||  | |||||||| ||||| || |
Sbjct: 107524 attggttagcatcaatcggagcgccagaccttgcttgtgaaatccggtttgcgtagatag 107583

                                                                          
Query: 302    tcaccagccgnagntgcgtgctgntnagcccttccaggtacgggacaaatgatttcccga 361
              | || || || || ||||||||| | ||||||||||  |||||||| ||||  ||||| |
Sbjct: 107584 ttacaaggcgcagctgcgtgctgttaagcccttccaaatacgggacgaatgccttcccaa 107643

                                                
Query: 362    gcatgatgtanatgtccaccaagcanaatacaac 395
              |||||||||| || ||||||||||| ||||||||
Sbjct: 107644 gcatgatgtagatatccaccaagcagaatacaac 107677



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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
             complete sequence
          Length = 164577

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 125/154 (81%)
 Strand = Plus / Plus

                                                                         
Query: 242   attggttagcgtcgatcgccgngccggaccttgcctgcnagatccggttcgcgtanatgg 301
             |||||||||| || ||||  | ||| |||||||| ||  | |||||||| ||||| || |
Sbjct: 50144 attggttagcatcaatcggagcgccagaccttgcttgtgaaatccggtttgcgtagatag 50203

                                                                         
Query: 302   tcaccagccgnagntgcgtgctgntnagcccttccaggtacgggacaaatgatttcccga 361
             | || || || || ||||||||| | ||||||||||  |||||||| ||||  ||||| |
Sbjct: 50204 ttacaaggcgcagctgcgtgctgttaagcccttccaaatacgggacgaatgccttcccaa 50263

                                               
Query: 362   gcatgatgtanatgtccaccaagcanaatacaac 395
             |||||||||| || ||||||||||| ||||||||
Sbjct: 50264 gcatgatgtagatatccaccaagcagaatacaac 50297



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 125/154 (81%)
 Strand = Plus / Plus

                                                                            
Query: 242      attggttagcgtcgatcgccgngccggaccttgcctgcnagatccggttcgcgtanatgg 301
                |||||||||| || ||||  | ||| |||||||| ||  | |||||||| ||||| || |
Sbjct: 25323585 attggttagcatcaatcggagcgccagaccttgcttgtgaaatccggtttgcgtagatag 25323644

                                                                            
Query: 302      tcaccagccgnagntgcgtgctgntnagcccttccaggtacgggacaaatgatttcccga 361
                | || || || || ||||||||| | ||||||||||  |||||||| ||||  ||||| |
Sbjct: 25323645 ttacaaggcgcagctgcgtgctgttaagcccttccaaatacgggacgaatgccttcccaa 25323704

                                                  
Query: 362      gcatgatgtanatgtccaccaagcanaatacaac 395
                |||||||||| || ||||||||||| ||||||||
Sbjct: 25323705 gcatgatgtagatatccaccaagcagaatacaac 25323738



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>dbj|AK101840.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069D24, full
           insert sequence
          Length = 643

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 125/154 (81%)
 Strand = Plus / Minus

                                                                       
Query: 242 attggttagcgtcgatcgccgngccggaccttgcctgcnagatccggttcgcgtanatgg 301
           |||||||||| || ||||  | ||| |||||||| ||  | |||||||| ||||| || |
Sbjct: 288 attggttagcatcaatcggagcgccagaccttgcttgtgaaatccggtttgcgtagatag 229

                                                                       
Query: 302 tcaccagccgnagntgcgtgctgntnagcccttccaggtacgggacaaatgatttcccga 361
           | || || || || ||||||||| | ||||||||||  |||||||| ||||  ||||| |
Sbjct: 228 ttacaaggcgcagctgcgtgctgttaagcccttccaaatacgggacgaatgccttcccaa 169

                                             
Query: 362 gcatgatgtanatgtccaccaagcanaatacaac 395
           |||||||||| || ||||||||||| ||||||||
Sbjct: 168 gcatgatgtagatatccaccaagcagaatacaac 135



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>dbj|AK067306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100C22, full
            insert sequence
          Length = 5032

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 125/154 (81%)
 Strand = Plus / Minus

                                                                        
Query: 242  attggttagcgtcgatcgccgngccggaccttgcctgcnagatccggttcgcgtanatgg 301
            |||||||||| || ||||  | ||| |||||||| ||  | |||||||| ||||| || |
Sbjct: 4632 attggttagcatcaatcggagcgccagaccttgcttgtgaaatccggtttgcgtagatag 4573

                                                                        
Query: 302  tcaccagccgnagntgcgtgctgntnagcccttccaggtacgggacaaatgatttcccga 361
            | || || || || ||||||||| | ||||||||||  |||||||| ||||  ||||| |
Sbjct: 4572 ttacaaggcgcagctgcgtgctgttaagcccttccaaatacgggacgaatgccttcccaa 4513

                                              
Query: 362  gcatgatgtanatgtccaccaagcanaatacaac 395
            |||||||||| || ||||||||||| ||||||||
Sbjct: 4512 gcatgatgtagatatccaccaagcagaatacaac 4479



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>ref|XM_473109.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4233

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 94/113 (83%)
 Strand = Plus / Minus

                                                                        
Query: 283  atccggttcgcgtanatggtcaccagccgnagntgcgtgctgntnagcccttccaggtac 342
            |||||||| ||||| || || || || || || ||||||||| | ||||||||||  |||
Sbjct: 4157 atccggtttgcgtagatagttacaaggcgcagctgcgtgctgttaagcccttccaaatac 4098

                                                                 
Query: 343  gggacaaatgatttcccgagcatgatgtanatgtccaccaagcanaatacaac 395
            ||||| ||||  ||||| ||||||||||| || ||||||||||| ||||||||
Sbjct: 4097 gggacgaatgccttcccaagcatgatgtagatatccaccaagcagaatacaac 4045



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>gb|AY109155.1| Zea mays PCO096202 mRNA sequence
          Length = 547

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 98/119 (82%)
 Strand = Plus / Minus

                                                                       
Query: 264 gccggaccttgcctgcnagatccggttcgcgtanatggtcaccagccgnagntgcgtgct 323
           ||||||||| |||||  | |||||||| ||||| ||||| || || || || ||||||||
Sbjct: 167 gccggacctcgcctgtgaaatccggttagcgtagatggttactaggcggagctgcgtgct 108

                                                                      
Query: 324 gntnagcccttccaggtacgggacaaatgatttcccgagcatgatgtanatgtccacca 382
           | | |||||||||| ||| ||  |||||| |||||| ||||||||||| || |||||||
Sbjct: 107 gctaagcccttccaagtatggagcaaatgctttcccaagcatgatgtagatatccacca 49



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 101/128 (78%)
 Strand = Plus / Plus

                                                                            
Query: 268      gaccttgcctgcnagatccggttcgcgtanatggtcaccagccgnagntgcgtgctgntn 327
                |||||||||||  | |||| ||| || || || || || || || || ||||||||  | 
Sbjct: 24508536 gaccttgcctgtgatatcctgtttgcatagattgttactaggcgcagctgcgtgctatta 24508595

                                                                            
Query: 328      agcccttccaggtacgggacaaatgatttcccgagcatgatgtanatgtccaccaagcan 387
                ||||| || || || || ||||||| |||||| ||||| ||||| || ||||||||||| 
Sbjct: 24508596 agcccctctagatatggtacaaatgctttcccaagcataatgtagatatccaccaagcag 24508655

                        
Query: 388      aatacaac 395
                ||||||||
Sbjct: 24508656 aatacaac 24508663



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>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1792_D02
          Length = 141649

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 101/128 (78%)
 Strand = Plus / Plus

                                                                          
Query: 268    gaccttgcctgcnagatccggttcgcgtanatggtcaccagccgnagntgcgtgctgntn 327
              |||||||||||  | |||| ||| || || || || || || || || ||||||||  | 
Sbjct: 136742 gaccttgcctgtgatatcctgtttgcatagattgttactaggcgcagctgcgtgctatta 136801

                                                                          
Query: 328    agcccttccaggtacgggacaaatgatttcccgagcatgatgtanatgtccaccaagcan 387
              ||||| || || || || ||||||| |||||| ||||| ||||| || ||||||||||| 
Sbjct: 136802 agcccctctagatatggtacaaatgctttcccaagcataatgtagatatccaccaagcag 136861

                      
Query: 388    aatacaac 395
              ||||||||
Sbjct: 136862 aatacaac 136869



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>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1014_H03
          Length = 132696

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 101/128 (78%)
 Strand = Plus / Plus

                                                                         
Query: 268   gaccttgcctgcnagatccggttcgcgtanatggtcaccagccgnagntgcgtgctgntn 327
             |||||||||||  | |||| ||| || || || || || || || || ||||||||  | 
Sbjct: 22637 gaccttgcctgtgatatcctgtttgcatagattgttactaggcgcagctgcgtgctatta 22696

                                                                         
Query: 328   agcccttccaggtacgggacaaatgatttcccgagcatgatgtanatgtccaccaagcan 387
             ||||| || || || || ||||||| |||||| ||||| ||||| || ||||||||||| 
Sbjct: 22697 agcccctctagatatggtacaaatgctttcccaagcataatgtagatatccaccaagcag 22756

                     
Query: 388   aatacaac 395
             ||||||||
Sbjct: 22757 aatacaac 22764



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>dbj|AK120120.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025O20, full
            insert sequence
          Length = 4796

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 346  acaaatgatttcccgagcatgatgtanatgtccaccaagcanaatacaac 395
            ||||||| |||||| ||||| ||||| || ||||||||||| ||||||||
Sbjct: 4345 acaaatgctttcccaagcataatgtagatatccaccaagcagaatacaac 4296



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>dbj|AK067382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102B13, full
            insert sequence
          Length = 4538

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 101/128 (78%)
 Strand = Plus / Minus

                                                                        
Query: 268  gaccttgcctgcnagatccggttcgcgtanatggtcaccagccgnagntgcgtgctgntn 327
            |||||||||||  | |||| ||| || || || || || || || || ||||||||  | 
Sbjct: 4168 gaccttgcctgtgatatcctgtttgcatagattgttactaggcgcagctgcgtgctatta 4109

                                                                        
Query: 328  agcccttccaggtacgggacaaatgatttcccgagcatgatgtanatgtccaccaagcan 387
            ||||| || || || || ||||||| |||||| ||||| ||||| || ||||||||||| 
Sbjct: 4108 agcccctctagatatggtacaaatgctttcccaagcataatgtagatatccaccaagcag 4049

                    
Query: 388  aatacaac 395
            ||||||||
Sbjct: 4048 aatacaac 4041



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>ref|XM_719883.1| Plasmodium yoelii yoelii str. 17XNL 235 kDa rhoptry protein
           (PY04647) partial mRNA
          Length = 3247

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 86  ataatattcacacaaagaacca 107
           ||||||||||||||||||||||
Sbjct: 226 ataatattcacacaaagaacca 205



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>emb|CR388054.11| Zebrafish DNA sequence from clone CH211-82E18 in linkage group 1,
              complete sequence
          Length = 162569

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 146    tacacaaacctacacaaaca 165
              ||||||||||||||||||||
Sbjct: 106328 tacacaaacctacacaaaca 106309



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>gb|AC126682.3| Mus musculus BAC clone RP23-8E3 from 15, complete sequence
          Length = 221352

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    acaaacctacacaaacaaac 168
              ||||||||||||||||||||
Sbjct: 162677 acaaacctacacaaacaaac 162658



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>emb|AL845439.5| Human DNA sequence from clone DAQB-215D11 on chromosome 6 Contains 3'
             end of C6orf12 for chromosome 6 open reading frame 12,
             ETF1P1 for eukaryotic translation termination factor 1
             pseudogene 1, ZNRD1 for zinc ribbon domain containing, 1,
             PPP1R11 for protein phosphatase 1, regulatory (inhibitor)
             subunit 11, RNF39 for ring finger protein 39 and 3 CpG
             islands, complete sequence
          Length = 74764

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 52016 acaaacctacacaaacaaac 52035



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>emb|BX088647.3| Human DNA sequence from clone DASS-90B3 on chromosome 6, complete
             sequence
          Length = 100183

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 70861 acaaacctacacaaacaaac 70880



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>emb|AL671859.3| Human DNA sequence from clone XXbac-218N7 on chromosome 6 contains the
             5' end of the gene for HTEX4, 4.3 and 6, a eukaryotic
             translation termination factor 1 (ETF1) pseudogene, the
             ZNRD1 gene for zinc ribbon domain containing 1, the
             PPP1R11 gene for protein phosphatase 1, regulatory
             (inhibitor) subunit 11, the HZFW1 gene for HZFW1 protein,
             the TRIM31, TRIM40 and TRIM10 genes for tripartite
             motif-containing 31,40 and 10 and four CpG islands,
             complete sequence
          Length = 144169

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 56838 acaaacctacacaaacaaac 56857



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>emb|AL669914.2| Human DNA sequence from clone XXbac-250I8 on chromosome 6 contains a
             major histocompatibility complex, class I, J pseudogene,
             the gene for HCGVIII protein, the genes for HTEX4, 4.3 and
             6, a eukaryotic translation termination factor 1 (ETF1)
             pseudogene, the ZNRD1 gene for zinc ribbon domain
             containing, 1 , the PPP1R11 gene for protein phosphatase
             1, regulatory (inhibitor) subunit 11, the HZFW1 gene for
             HZFW1 protein, the TRIM31 gene for tripartite motif
             containing 31, the TRIM40 gene for tripartite
             morif-containing 40, the TRIM10 gene for  tripartite motif
             containing 10, the 5' end of the TRIM15 gene for
             tripartite motif-containing 15 and five CpG islands,
             complete sequence
          Length = 159178

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 71874 acaaacctacacaaacaaac 71893



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>emb|BX927229.6| Human DNA sequence from clone DAMA-377D17 on chromosome 6, complete
              sequence
          Length = 112627

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 149    acaaacctacacaaacaaac 168
              ||||||||||||||||||||
Sbjct: 108519 acaaacctacacaaacaaac 108538



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>emb|CR759960.3| Human DNA sequence from clone DAAP-65D20 on chromosome 6, complete
             sequence
          Length = 97107

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 74405 acaaacctacacaaacaaac 74424



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>emb|CR759763.2| Human DNA sequence from clone DAMC-182C13 on chromosome 6, complete
             sequence
          Length = 110503

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 96624 acaaacctacacaaacaaac 96643



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>dbj|AB210196.1| Pan troglodytes ZNRD1, PPP1R11, RNF genes for zinc ribbon domain
             containing, 1, protein phosphatase 1, regulatory
             (inhibitor) subunit 11 isoform 1, HZFw1 protein isoform 1,
             complete cds, HTEX4 gene, exon 1, 2, 3, 4, cell_line:
             Ericka
          Length = 46836

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 46794 acaaacctacacaaacaaac 46813



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>dbj|AB210195.1| Pan troglodytes ZNRD1, PPP1R11, RNF39 genes for zinc ribbon domain
             containing, 1, protein phosphatase 1, regulatory
             (inhibitor) subunit 11 isoform 1, HZFw1 protein isoform 1,
             complete cds, HTEX4 gene, exon 1, 2, 3, 4, cell_line:
             Borie
          Length = 46836

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 46794 acaaacctacacaaacaaac 46813



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>dbj|AB202082.1| Homo sapiens ZNRD1, PPP1R11, RNF39 genes for zinc ribbon domain
             containing, 1, protein phosphatase 1, regulatory
             (inhibitor) subunit 11, ring finger protein 39, complete
             cds
          Length = 45907

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 45865 acaaacctacacaaacaaac 45884



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>emb|BX511223.6| Zebrafish DNA sequence from clone DKEYP-96B6 in linkage group 14,
             complete sequence
          Length = 190254

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aatattcacacaaagaacca 107
             ||||||||||||||||||||
Sbjct: 15904 aatattcacacaaagaacca 15923



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>emb|BX284697.8| Zebrafish DNA sequence from clone DKEY-7M11 in linkage group 1, complete
              sequence
          Length = 209946

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    tacacaaacctacacaaaca 165
              ||||||||||||||||||||
Sbjct: 145001 tacacaaacctacacaaaca 145020



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>dbj|BA000025.2| Homo sapiens genomic DNA, chromosome 6p21.3, HLA Class I region
          Length = 2229817

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     acaaacctacacaaacaaac 168
               ||||||||||||||||||||
Sbjct: 1864926 acaaacctacacaaacaaac 1864907



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>dbj|BA000041.2| Pan troglodytes DNA, major histocompatibility complex class I region
          Length = 1750601

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 149     acaaacctacacaaacaaac 168
               ||||||||||||||||||||
Sbjct: 1407084 acaaacctacacaaacaaac 1407065



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>emb|BX005350.6| Zebrafish DNA sequence from clone DKEY-58C8 in linkage group 1,
             complete sequence
          Length = 195436

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   tacacaaacctacacaaaca 165
             ||||||||||||||||||||
Sbjct: 96114 tacacaaacctacacaaaca 96133



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>emb|CR942385.2| Xenopus tropicalis finished cDNA, clone TGas136l07
          Length = 2242

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 345 gacaaatgatttcccgagcatgat 368
           |||||||||||||| |||||||||
Sbjct: 187 gacaaatgatttccagagcatgat 164



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>dbj|AB088087.1| Homo sapiens HCGVII, HTEX4,HTEX6A, HCGV, HZFW1, HZFC2 genes
          Length = 45882

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 45840 acaaacctacacaaacaaac 45859



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>gb|U53588.1|HSU53588 Homo sapiens MHC class 1 region
          Length = 37160

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  acaaacctacacaaacaaac 168
            ||||||||||||||||||||
Sbjct: 1871 acaaacctacacaaacaaac 1852



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>gb|AC004201.1|AC004201 Homo sapiens clone UWGC:y2c163 from 6p21, complete sequence
          Length = 43284

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   acaaacctacacaaacaaac 168
             ||||||||||||||||||||
Sbjct: 24624 acaaacctacacaaacaaac 24605



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>dbj|AB023055.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
              clone:904J21, complete sequence
          Length = 162383

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    acaaacctacacaaacaaac 168
              ||||||||||||||||||||
Sbjct: 158347 acaaacctacacaaacaaac 158328



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>dbj|AB023054.1| Homo sapiens genomic DNA, chromosome 6p21.3, HLA class I region,
              clone:679G22, complete sequence
          Length = 162383

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    acaaacctacacaaacaaac 168
              ||||||||||||||||||||
Sbjct: 158347 acaaacctacacaaacaaac 158328


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,642,428
Number of Sequences: 3902068
Number of extensions: 1642428
Number of successful extensions: 24518
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24463
Number of HSP's gapped (non-prelim): 54
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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