ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRP1_ARATH (Q9C8G9) Multidrug resistance-associated protein 1 (E... 119 6e-27
2MRP2_ARATH (Q42093) Multidrug resistance-associated protein 2 (E... 112 1e-24
3LTBP2_MOUSE (O08999) Latent transforming growth factor beta-bind... 32 1.7
4SYR1_BACHD (Q9K6C1) Arginyl-tRNA synthetase 1 (EC 6.1.1.19) (Arg... 31 3.8
5VPS16_MOUSE (Q920Q4) Vacuolar protein sorting 16 (mVPS16) 30 8.5
6VPS16_HUMAN (Q9H269) Vacuolar protein sorting 16 (hVPS16) 30 8.5

>MRP1_ARATH (Q9C8G9) Multidrug resistance-associated protein 1 (EC 3.6.3.44)|
            (Glutathione S-conjugate transporting ATPase 1)
            (ATP-energized glutathione S-conjugate pump 1)
          Length = 1622

 Score =  119 bits (299), Expect = 6e-27
 Identities = 59/117 (50%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
 Frame = -2

Query: 633  QRKWAASNRWXXXXXXXXXXXXXXXXXXXXXLEVAEGNSILRKTKDAVITLQSVLEGKHN 454
            QRKW AS+RW                     LE+ + NSIL+KTKDAV+TL+SVLEGKH+
Sbjct: 1505 QRKWQASSRWAAAAQFALAVSLTSSHNDLQSLEIEDDNSILKKTKDAVVTLRSVLEGKHD 1564

Query: 453  TEIEESLTEYQVPPDRWWSSLYKVIEGLATMSKLGRNRRQ-PGYSFENHGSIDWDQI 286
             EIE+SL +  +  +RWW SLYK++EGLA MS+L RNR Q P Y+ E   S DWD +
Sbjct: 1565 KEIEDSLNQSDISRERWWPSLYKMVEGLAVMSRLARNRMQHPDYNLEGK-SFDWDNV 1620



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>MRP2_ARATH (Q42093) Multidrug resistance-associated protein 2 (EC 3.6.3.44)|
            (Glutathione S-conjugate transporting ATPase 2)
            (ATP-energized glutathione S-conjugate pump 2)
          Length = 1623

 Score =  112 bits (279), Expect = 1e-24
 Identities = 55/117 (47%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
 Frame = -2

Query: 633  QRKWAASNRWXXXXXXXXXXXXXXXXXXXXXLEVAEGNSILRKTKDAVITLQSVLEGKHN 454
            QRKW AS+RW                     LE+ + +SIL++T DAV+TL+SVLEGKH+
Sbjct: 1506 QRKWLASSRWAAAAQFALAASLTSSHNDLQSLEIEDDSSILKRTNDAVVTLRSVLEGKHD 1565

Query: 453  TEIEESLTEYQVPPDRWWSSLYKVIEGLATMSKLGRNR-RQPGYSFENHGSIDWDQI 286
             EI ESL E+ +  + W SSLY+++EGLA MS+L RNR +QP Y+FE + + DWD +
Sbjct: 1566 KEIAESLEEHNISREGWLSSLYRMVEGLAVMSRLARNRMQQPDYNFEGN-TFDWDNV 1621



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>LTBP2_MOUSE (O08999) Latent transforming growth factor beta-binding protein 2|
            precursor (LTBP-2)
          Length = 1813

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +3

Query: 258  ALQCQCSTPKFDPSQ*TRGFQNCNQVADGCDPVCSSWRGLR*LCKVTTTTYQVEPDTQ 431
            +  C C T  F PS  +    + ++  D  DPVC +WR     C+ +  +Y+   D Q
Sbjct: 1230 SFSCLCETASFQPSPDSGECLDIDECEDREDPVCGAWR-----CENSPGSYRCILDCQ 1282



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>SYR1_BACHD (Q9K6C1) Arginyl-tRNA synthetase 1 (EC 6.1.1.19) (Arginine--tRNA|
           ligase 1) (ArgRS 1)
          Length = 556

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
 Frame = -2

Query: 450 EIEESLTEYQVPPDRWWS--SLY---KVIEGLATMSKLGRNRRQPG---YSFENHGSIDW 295
           +I+  L E++VP D W+S  SLY   KV + L  + + G+   Q G   +    +G  D 
Sbjct: 245 KIKSDLEEFRVPFDNWYSETSLYTTGKVEKTLNVLKEKGKTYEQDGALWFRSTEYGD-DK 303

Query: 294 DQI*VLNTGIAMLLNP 247
           D++ V N G    L P
Sbjct: 304 DRVLVKNDGSYTYLTP 319



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>VPS16_MOUSE (Q920Q4) Vacuolar protein sorting 16 (mVPS16)|
          Length = 839

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 486 TLQSVLEGKHNTEIEESLTEYQVPPDR-WWSSLYKV--IEGLATMSKLGRNRRQP-GY 325
           T+ +++ G HN   E+   ++++P  R WW  L  +  +E    + K  ++++ P GY
Sbjct: 699 TVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLAALADLEDWEELEKFSKSKKSPIGY 756



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>VPS16_HUMAN (Q9H269) Vacuolar protein sorting 16 (hVPS16)|
          Length = 839

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = -2

Query: 486 TLQSVLEGKHNTEIEESLTEYQVPPDR-WWSSLYKV--IEGLATMSKLGRNRRQP-GY 325
           T+ +++ G HN   E+   ++++P  R WW  L  +  +E    + K  ++++ P GY
Sbjct: 699 TVTTLILGGHNKRAEQLARDFRIPDKRLWWLKLTALADLEDWEELEKFSKSKKSPIGY 756


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,405,831
Number of Sequences: 219361
Number of extensions: 1910913
Number of successful extensions: 4361
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4361
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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