Clone Information

BLAST Search Result

Clone Name	rbags14n05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT018755.1\| Zea mays clone EL01N0523E09.d mRNA sequence	218	2e-53
2	dbj\|AK072011.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	202	1e-48
3	dbj\|AK070796.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	194	3e-46
4	gb\|BT018349.1\| Zea mays clone EL01T0403E10.c mRNA sequence	168	1e-38
5	ref\|NM_196336.1\| Oryza sativa (japonica cultivar-group) putative...	80	1e-11
6	gb\|AC122144.1\| Oryza sativa (japonica cultivar-group) chromosome...	80	1e-11
7	gb\|AC108884.1\| Oryza sativa (japonica cultivar-group) cultivar N...	80	1e-11
8	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	80	1e-11
9	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	80	1e-11
10	gb\|AC116412.19\| Mus musculus chromosome 5, clone RP24-82A20, com...	42	2.3
11	gb\|BC024318.1\| Homo sapiens PAN3 polyA specific ribonuclease sub...	42	2.3
12	gb\|AC006348.3\| Homo sapiens PAC clone RP5-876K2 from 7, complete...	42	2.3
13	emb\|BX647740.1\|HSM807886 Homo sapiens mRNA; cDNA DKFZp686K19283 ...	42	2.3
14	ref\|NM_175854.5\| Homo sapiens PAN3 polyA specific ribonuclease s...	42	2.3
15	emb\|AL773543.3\| Human DNA sequence from clone DAQB-187P15 on chr...	42	2.3
16	emb\|AL138712.19\| Human DNA sequence from clone RP11-502P18 on ch...	42	2.3
17	dbj\|AK091307.1\| Homo sapiens cDNA FLJ33988 fis, clone DFNES20063...	42	2.3
18	gb\|AC079856.7\| Homo sapiens BAC clone RP11-521B4 from 4, complet...	42	2.3
19	emb\|BX927168.11\| Human DNA sequence from clone DAMA-367I24 on ch...	42	2.3
20	emb\|CR376859.9\| Zebrafish DNA sequence from clone CH211-197D4 in...	42	2.3
21	ref\|NM_106247.2\| Arabidopsis thaliana unknown protein AT1G75980 ...	40	9.1
22	gb\|AE017354.1\| Legionella pneumophila subsp. pneumophila str. Ph...	40	9.1
23	gb\|AC146027.2\| Pan troglodytes BAC clone RP43-120L21 from 7, com...	40	9.1
24	gb\|AC079276.4\| Mus musculus strain C57BL6/J chromosome 6 clone R...	40	9.1
25	gb\|AC004884.1\| Homo sapiens PAC clone RP4-778K6 from 7, complete...	40	9.1
26	ref\|XM_803203.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	9.1
27	ref\|XM_809478.1\| Trypanosoma cruzi strain CL Brener hypothetical...	40	9.1
28	gb\|AC127278.4\| Mus musculus BAC clone RP24-224D24 from chromosom...	40	9.1
29	gb\|AC127301.3\| Mus musculus BAC clone RP23-269N6 from 18, comple...	40	9.1
30	gb\|AC099413.3\| Mus musculus BAC clone RP23-2O10 from 4, complete...	40	9.1
31	gb\|AC117189.3\| Mus musculus BAC clone RP23-44D2 from 8, complete...	40	9.1
32	emb\|BX284668.4\| Human DNA sequence from clone RP11-108M9 on chro...	40	9.1
33	emb\|AL021920.1\|HS163M9 Human DNA sequence from clone RP1-163M9 o...	40	9.1
34	emb\|CR628336.1\| Legionella pneumophila str. Paris complete genome	40	9.1
35	gb\|AC104849.2\| Homo sapiens chromosome 3 clone RP11-154D3, compl...	40	9.1
36	gb\|AF480912.1\| Legionella pneumophila clone pA37F putative lipop...	40	9.1
37	emb\|BX005425.12\| Zebrafish DNA sequence from clone DKEY-7O6 in l...	40	9.1
38	gb\|AC010715.6\| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell...	40	9.1
39	gb\|AC105939.2\| Homo sapiens chromosome 3 clone RP11-241A5, compl...	40	9.1
40	gb\|DP000063.1\| Oryctolagus cuniculus target 117 genomic scaffold	40	9.1
41	dbj\|AK145723.1\| Mus musculus blastocyst blastocyst cDNA, RIKEN f...	40	9.1
42	gb\|AY036106.1\| Chlamydomonas reinhardtii hydroxyproline-rich gly...	40	9.1
43	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
44	gb\|AC007396.6\|AC007396 Genomic sequence for Arabidopsis thaliana...	40	9.1
45	dbj\|AP005091.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
46	dbj\|AP005704.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.1
47	emb\|AL133444.4\|CNS01DV0 Human chromosome 14 DNA sequence BAC R-7...	40	9.1
48	gb\|AE003563.4\| Drosophila melanogaster chromosome 3L, section 22...	40	9.1
49	gb\|AC004767.1\|AC004767 Drosophila melanogaster DNA sequence (P1s...	40	9.1
50	gb\|AC005492.1\|AC005492 Homo sapiens clone UWGC:g1564a021 from 7p...	40	9.1
51	gb\|U84749.1\|DMU84749 Drosophila melanogaster cuticle protein LCP...	40	9.1
52	gb\|DQ272236.1\| Homo sapiens G protein-coupled receptor 154 (GPR1...	40	9.1
53	emb\|AL772320.12\| Mouse DNA sequence from clone RP23-346F2 on chr...	40	9.1

>gb|BT018755.1| Zea mays clone EL01N0523E09.d mRNA sequence
          Length = 2199

 Score =  218 bits (110), Expect = 2e-53
 Identities = 260/310 (83%)
 Strand = Plus / Minus

                                                                        
Query: 328  tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
            ||||||||| |||||||| |||| |||||| ||||  |||| ||||| ||||||||  | 
Sbjct: 1755 tggacaagaatgcacattaaggacctccaacgcacaacaaagggatattgcagattctaa 1696

                                                                        
Query: 388  ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 447
            ||| |||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1695 ttcctcctcttgcaacatggtgcatgccaaaagttggaggttggtcaatcttgggcaatc 1636

                                                                        
Query: 448  aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 507
            ||||||||| | |||||||||| ||||||| ||||| |||||  |  |||||||| ||||
Sbjct: 1635 aagcttcagcacctccagtgagctacaattgctcaagtttaacgttaaaagattggagca 1576

                                                                        
Query: 508  cttcaaatctacttccttcaagtttgcagacaaattaaggttgatcttagacaaattcag 567
              ||||||| |||||||||||||| |  || | |||||| || || || |||||||    
Sbjct: 1575 tgtcaaatccacttccttcaagttggttgaaagattaagattaattttggacaaatgtga 1516

                                                                        
Query: 568  atagttggccgttgaaggaataacaactttcttaatatttggacaaccagtacagttgag 627
            | |||| ||  | |||||||||||||||||||||||||| || || |||||||| |||||
Sbjct: 1515 aaagtttgctatcgaaggaataacaactttcttaatattagggcacccagtacaattgag 1456

                      
Query: 628  aacttcaagc 637
            ||||||||||
Sbjct: 1455 aacttcaagc 1446

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>dbj|AK072011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102A05, full
            insert sequence
          Length = 1911

 Score =  202 bits (102), Expect = 1e-48
 Identities = 258/310 (83%)
 Strand = Plus / Minus

                                                                        
Query: 328  tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
            ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 1442 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1383

                                                                        
Query: 388  ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 447
            ||| || ||||||||||| |||||||||| ||||||||| || | || ||||||||||||
Sbjct: 1382 ttcctcatcttgcaacatggtgcatgccagaagttggagatttgtcagtcttgggcaatc 1323

                                                                        
Query: 448  aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 507
            ||||||||||| |||||| ||| ||||||| ||||  || ||| | ||||||||| ||||
Sbjct: 1322 aagcttcagaacctccagggagctacaattgctcaggttcaaagtataaagattggagca 1263

                                                                        
Query: 508  cttcaaatctacttccttcaagtttgcagacaaattaaggttgatcttagacaaattcag 567
              ||||||| |||||||| || ||||  |||| |||||| ||||| |||||||     ||
Sbjct: 1262 tgtcaaatccacttcctttaaatttgtggacagattaagattgattttagacaggcgtag 1203

                                                                        
Query: 568  atagttggccgttgaaggaataacaactttcttaatatttggacaaccagtacagttgag 627
            |||| | | | ||||||| || |  ||||||||||||||||||||||||||||| || ||
Sbjct: 1202 ataggttgtcattgaagggatgatgactttcttaatatttggacaaccagtacaattcag 1143

                      
Query: 628  aacttcaagc 637
            ||||||||||
Sbjct: 1142 aacttcaagc 1133

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>dbj|AK070796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023067J12, full
            insert sequence
          Length = 2385

 Score =  194 bits (98), Expect = 3e-46
 Identities = 257/310 (82%)
 Strand = Plus / Minus

                                                                        
Query: 328  tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
            ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 1884 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 1825

                                                                        
Query: 388  ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 447
            ||| || ||| ||||||| |||||||||| ||||||||| || | || ||||||||||||
Sbjct: 1824 ttcctcatctcgcaacatggtgcatgccagaagttggagatttgtcagtcttgggcaatc 1765

                                                                        
Query: 448  aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 507
            ||||||||||| |||||| ||| ||||||| ||||  || ||| | ||||||||| ||||
Sbjct: 1764 aagcttcagaacctccagggagctacaattgctcaggttcaaagtataaagattggagca 1705

                                                                        
Query: 508  cttcaaatctacttccttcaagtttgcagacaaattaaggttgatcttagacaaattcag 567
              ||||||| |||||||| || ||||  |||| |||||| ||||| |||||||     ||
Sbjct: 1704 tgtcaaatccacttcctttaaatttgtggacagattaagattgattttagacaggcgtag 1645

                                                                        
Query: 568  atagttggccgttgaaggaataacaactttcttaatatttggacaaccagtacagttgag 627
            |||| | | | ||||||| || |  ||||||||||||||||||||||||||||| || ||
Sbjct: 1644 ataggttgtcattgaagggatgatgactttcttaatatttggacaaccagtacaattcag 1585

                      
Query: 628  aacttcaagc 637
            ||||||||||
Sbjct: 1584 aacttcaagc 1575

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>gb|BT018349.1| Zea mays clone EL01T0403E10.c mRNA sequence
          Length = 1020

 Score =  168 bits (85), Expect = 1e-38
 Identities = 253/309 (81%)
 Strand = Plus / Minus

                                                                       
Query: 328 tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
           ||||||||| |||||||| |||| |||||| ||||  |||| ||||| ||||||||  | 
Sbjct: 400 tggacaagaatgcacattaaggaactccaacgcactacaaagggatattgcagattctaa 341

                                                                       
Query: 388 ttcatcctcttgcaacattgtgcatgccaaaagttggaggttagccaatcttgggcaatc 447
           ||| ||||||||||||||  ||||||||| ||| ||||| || | |||||||||||||||
Sbjct: 340 ttcctcctcttgcaacatgatgcatgccagaagctggagattggacaatcttgggcaatc 281

                                                                       
Query: 448 aagcttcagaatctccagtgagttacaattactcaaatttaaattgtaaagattgtagca 507
           ||||||||| | |||||||||| |||| || ||||| |||||  |  ||||||||   ||
Sbjct: 280 aagcttcagcacctccagtgagctacagttgctcaagtttaacgttaaaagattgggaca 221

                                                                       
Query: 508 cttcaaatctacttccttcaagtttgcagacaaattaaggttgatcttagacaaattcag 567
             ||||||| |||||||||||||| |  || | |||||| || || || | |||||  ||
Sbjct: 220 tgtcaaatccacttccttcaagttggtcgaaagattaagattaattttggccaaatgtag 161

                                                                       
Query: 568 atagttggccgttgaaggaataacaactttcttaatatttggacaaccagtacagttgag 627
           | |||| ||  |||||||||||||||||||||| ||||| || || |||||||| |||||
Sbjct: 160 aaagttcgctattgaaggaataacaactttcttgatattagggcacccagtacaattgag 101

                    
Query: 628 aacttcaag 636
           |||||||||
Sbjct: 100 aacttcaag 92



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 248 tatgcgatgaggctgctctgaatgcgcttgagagttgggcaa 289
           |||| ||||||||||||||| |||||||| ||| | ||||||
Sbjct: 480 tatgagatgaggctgctctggatgcgcttcagactggggcaa 439

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>ref|NM_196336.1| Oryza sativa (japonica cultivar-group) putative F-box protein family
            (OSJNAa0011L09.13), mRNA
          Length = 3459

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                        
Query: 328  tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
            ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 2757 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 2698

                                        
Query: 388  ttcatcctcttgcaacattgtgcatgcc 415
            ||| || ||||||||||| |||||||||
Sbjct: 2697 ttcctcatcttgcaacatggtgcatgcc 2670

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>gb|AC122144.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0011L09, complete sequence
          Length = 121055

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 118/144 (81%)
 Strand = Plus / Plus

                                                                         
Query: 494   taaagattgtagcacttcaaatctacttccttcaagtttgcagacaaattaaggttgatc 553
             ||||||||| ||||  ||||||| |||||||| || ||||  |||| |||||| ||||| 
Sbjct: 77501 taaagattggagcatgtcaaatccacttcctttaaatttgtggacagattaagattgatt 77560

                                                                         
Query: 554   ttagacaaattcagatagttggccgttgaaggaataacaactttcttaatatttggacaa 613
             |||||||     |||||| | | | ||||||| || |  |||||||||||||||||||||
Sbjct: 77561 ttagacaggcgtagataggttgtcattgaagggatgatgactttcttaatatttggacaa 77620

                                     
Query: 614   ccagtacagttgagaacttcaagc 637
             |||||||| || ||||||||||||
Sbjct: 77621 ccagtacaattcagaacttcaagc 77644



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                         
Query: 328   tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
             ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 76107 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 76166

                                         
Query: 388   ttcatcctcttgcaacattgtgcatgcc 415
             ||| || ||||||||||| |||||||||
Sbjct: 76167 ttcctcatcttgcaacatggtgcatgcc 76194



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                         
Query: 418   aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 477
             ||||||||| || | || ||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 77343 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 77402

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>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
              OSJNBb0058B20 from chromosome 10, complete sequence
          Length = 156232

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Minus

                                                                          
Query: 328    tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
              ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 141181 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 141122

                                          
Query: 388    ttcatcctcttgcaacattgtgcatgcc 415
              ||| || ||||||||||| |||||||||
Sbjct: 141121 ttcctcatcttgcaacatggtgcatgcc 141094



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 118/144 (81%)
 Strand = Plus / Minus

                                                                          
Query: 494    taaagattgtagcacttcaaatctacttccttcaagtttgcagacaaattaaggttgatc 553
              ||||||||| ||||  ||||||| |||||||| || ||||  |||| |||||| ||||| 
Sbjct: 139787 taaagattggagcatgtcaaatccacttcctttaaatttgtggacagattaagattgatt 139728

                                                                          
Query: 554    ttagacaaattcagatagttggccgttgaaggaataacaactttcttaatatttggacaa 613
              |||||||     |||||| | | | ||||||| || |  |||||||||||||||||||||
Sbjct: 139727 ttagacaggcgtagataggttgtcattgaagggatgatgactttcttaatatttggacaa 139668

                                      
Query: 614    ccagtacagttgagaacttcaagc 637
              |||||||| || ||||||||||||
Sbjct: 139667 ccagtacaattcagaacttcaagc 139644



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Minus

                                                                          
Query: 418    aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 477
              ||||||||| || | || ||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 139945 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 139886

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 118/144 (81%)
 Strand = Plus / Plus

                                                                            
Query: 494      taaagattgtagcacttcaaatctacttccttcaagtttgcagacaaattaaggttgatc 553
                ||||||||| ||||  ||||||| |||||||| || ||||  |||| |||||| ||||| 
Sbjct: 12781062 taaagattggagcatgtcaaatccacttcctttaaatttgtggacagattaagattgatt 12781121

                                                                            
Query: 554      ttagacaaattcagatagttggccgttgaaggaataacaactttcttaatatttggacaa 613
                |||||||     |||||| | | | ||||||| || |  |||||||||||||||||||||
Sbjct: 12781122 ttagacaggcgtagataggttgtcattgaagggatgatgactttcttaatatttggacaa 12781181

                                        
Query: 614      ccagtacagttgagaacttcaagc 637
                |||||||| || ||||||||||||
Sbjct: 12781182 ccagtacaattcagaacttcaagc 12781205



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 328      tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
                ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 12779668 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12779727

                                            
Query: 388      ttcatcctcttgcaacattgtgcatgcc 415
                ||| || ||||||||||| |||||||||
Sbjct: 12779728 ttcctcatcttgcaacatggtgcatgcc 12779755



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 418      aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 477
                ||||||||| || | || ||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 12780904 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 12780963

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 118/144 (81%)
 Strand = Plus / Plus

                                                                            
Query: 494      taaagattgtagcacttcaaatctacttccttcaagtttgcagacaaattaaggttgatc 553
                ||||||||| ||||  ||||||| |||||||| || ||||  |||| |||||| ||||| 
Sbjct: 12788403 taaagattggagcatgtcaaatccacttcctttaaatttgtggacagattaagattgatt 12788462

                                                                            
Query: 554      ttagacaaattcagatagttggccgttgaaggaataacaactttcttaatatttggacaa 613
                |||||||     |||||| | | | ||||||| || |  |||||||||||||||||||||
Sbjct: 12788463 ttagacaggcgtagataggttgtcattgaagggatgatgactttcttaatatttggacaa 12788522

                                        
Query: 614      ccagtacagttgagaacttcaagc 637
                |||||||| || ||||||||||||
Sbjct: 12788523 ccagtacaattcagaacttcaagc 12788546



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 76/88 (86%)
 Strand = Plus / Plus

                                                                            
Query: 328      tggacaagagtgcacattgaggatctccaatgcaccgcaaaaggatagtgcagatttcag 387
                ||||||||||||||||||||| ||||||||||||| |||    |||| ||||||||  ||
Sbjct: 12787009 tggacaagagtgcacattgagaatctccaatgcactgcagcgcgatattgcagattctag 12787068

                                            
Query: 388      ttcatcctcttgcaacattgtgcatgcc 415
                ||| || ||||||||||| |||||||||
Sbjct: 12787069 ttcctcatcttgcaacatggtgcatgcc 12787096



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 53/60 (88%)
 Strand = Plus / Plus

                                                                            
Query: 418      aagttggaggttagccaatcttgggcaatcaagcttcagaatctccagtgagttacaatt 477
                ||||||||| || | || ||||||||||||||||||||||| |||||| ||| |||||||
Sbjct: 12788245 aagttggagatttgtcagtcttgggcaatcaagcttcagaacctccagggagctacaatt 12788304

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>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence
          Length = 191823

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    acaagaaatcaattggaaaaa 146
              |||||||||||||||||||||
Sbjct: 163256 acaagaaatcaattggaaaaa 163236

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>gb|BC024318.1| Homo sapiens PAN3 polyA specific ribonuclease subunit homolog (S.
            cerevisiae), mRNA (cDNA clone IMAGE:3915414)
          Length = 4152

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 592  aactttcttaatatttggaca 612
            |||||||||||||||||||||
Sbjct: 2508 aactttcttaatatttggaca 2528

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>gb|AC006348.3| Homo sapiens PAC clone RP5-876K2 from 7, complete sequence
          Length = 135883

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 126    acaagaaatcaattggaaaaa 146
              |||||||||||||||||||||
Sbjct: 117289 acaagaaatcaattggaaaaa 117309

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>emb|BX647740.1|HSM807886 Homo sapiens mRNA; cDNA DKFZp686K19283 (from clone DKFZp686K19283)
          Length = 3532

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 592  aactttcttaatatttggaca 612
            |||||||||||||||||||||
Sbjct: 1887 aactttcttaatatttggaca 1907

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>ref|NM_175854.5| Homo sapiens PAN3 polyA specific ribonuclease subunit homolog (S.
            cerevisiae) (PAN3), mRNA
          Length = 4877

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 592  aactttcttaatatttggaca 612
            |||||||||||||||||||||
Sbjct: 3247 aactttcttaatatttggaca 3267

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>emb|AL773543.3| Human DNA sequence from clone DAQB-187P15 on chromosome 6 Contains the
             MTCO3P1 pseudogene for cytochrome c oxidase III, the
             HLA-DQB3 pseudogene for major histocompatibility complex,
             class II, DQ beta 3, the HLA-DQA2 gene for major
             histocompatibility complex, class II, DQ alpha 2, the
             HLA-DQB2 gene for major histocompatibility complex, class
             II, DQ beta 2 and one CpG island, complete sequence
          Length = 117303

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 203   tggcttttttgtttcaaatct 223
             |||||||||||||||||||||
Sbjct: 66812 tggcttttttgtttcaaatct 66832

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>emb|AL138712.19| Human DNA sequence from clone RP11-502P18 on chromosome 13 Contains 3'
             end of novel gene similar to Drosophila CG11486,  and the
             3' end of the FLT1 gene for fms-related tyrosine kinase 1
             (vascular endothelial growth factor/vascular permeability
             factor receptor), complete sequence
          Length = 164519

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 592   aactttcttaatatttggaca 612
             |||||||||||||||||||||
Sbjct: 61418 aactttcttaatatttggaca 61438

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>dbj|AK091307.1| Homo sapiens cDNA FLJ33988 fis, clone DFNES2006346, weakly similar to
            PAB-DEPENDENT POLY(A)-SPECIFIC RIBONUCLEASE SUBUNIT PAN3
            (EC 3.1.13.4)
          Length = 3208

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 592  aactttcttaatatttggaca 612
            |||||||||||||||||||||
Sbjct: 1581 aactttcttaatatttggaca 1601

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>gb|AC079856.7| Homo sapiens BAC clone RP11-521B4 from 4, complete sequence
          Length = 155340

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 477   tactcaaatttaaattgtaaagatt 501
             ||||||||| |||||||||||||||
Sbjct: 85341 tactcaaatataaattgtaaagatt 85365

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>emb|BX927168.11| Human DNA sequence from clone DAMA-367I24 on chromosome 6, complete
              sequence
          Length = 109326

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 203    tggcttttttgtttcaaatct 223
              |||||||||||||||||||||
Sbjct: 106780 tggcttttttgtttcaaatct 106800

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>emb|CR376859.9| Zebrafish DNA sequence from clone CH211-197D4 in linkage group 10,
             complete sequence
          Length = 58467

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 473   caattactcaaatttaaattgtaaa 497
             ||||||| |||||||||||||||||
Sbjct: 25568 caattacacaaatttaaattgtaaa 25544

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>ref|NM_106247.2| Arabidopsis thaliana unknown protein AT1G75980 mRNA, complete cds
          Length = 1060

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 445 atcaagcttcagaatctcca 464
           ||||||||||||||||||||
Sbjct: 21  atcaagcttcagaatctcca 2

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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 201     aatggcttttttgtttcaaa 220
               ||||||||||||||||||||
Sbjct: 1131070 aatggcttttttgtttcaaa 1131051

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>gb|AC146027.2| Pan troglodytes BAC clone RP43-120L21 from 7, complete sequence
          Length = 182348

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 482    aaatttaaattgtaaagatt 501
              ||||||||||||||||||||
Sbjct: 167235 aaatttaaattgtaaagatt 167254

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>gb|AC079276.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-446B13, complete
              sequence
          Length = 205177

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 381    atttcagttcatcctcttgc 400
              ||||||||||||||||||||
Sbjct: 133427 atttcagttcatcctcttgc 133446

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>gb|AC004884.1| Homo sapiens PAC clone RP4-778K6 from 7, complete sequence
          Length = 138244

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  actcaaatttaaattgtaaa 497
            ||||||||||||||||||||
Sbjct: 6867 actcaaatttaaattgtaaa 6886

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>ref|XM_803203.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510397.10) partial mRNA
          Length = 579

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 gacaatggcttttttgtttc 217
           ||||||||||||||||||||
Sbjct: 304 gacaatggcttttttgtttc 323

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>ref|XM_809478.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510609.20) partial mRNA
          Length = 579

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 gacaatggcttttttgtttc 217
           ||||||||||||||||||||
Sbjct: 304 gacaatggcttttttgtttc 323

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>gb|AC127278.4| Mus musculus BAC clone RP24-224D24 from chromosome 18, complete sequence
          Length = 149172

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    gcttcagaatctccagtgag 469
              ||||||||||||||||||||
Sbjct: 111504 gcttcagaatctccagtgag 111523

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>gb|AC127301.3| Mus musculus BAC clone RP23-269N6 from 18, complete sequence
          Length = 166565

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 450    gcttcagaatctccagtgag 469
              ||||||||||||||||||||
Sbjct: 163199 gcttcagaatctccagtgag 163180

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>gb|AC099413.3| Mus musculus BAC clone RP23-2O10 from 4, complete sequence
          Length = 208798

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 320    tttatttgtggacaagagtg 339
              ||||||||||||||||||||
Sbjct: 207754 tttatttgtggacaagagtg 207735

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>gb|AC117189.3| Mus musculus BAC clone RP23-44D2 from 8, complete sequence
          Length = 165254

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   agcttcagaatctccagtga 468
             ||||||||||||||||||||
Sbjct: 66147 agcttcagaatctccagtga 66166

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>emb|BX284668.4| Human DNA sequence from clone RP11-108M9 on chromosome 1 Contains four
             novel genes, a novel pseudogene, the 5' end of the CROCC
             gene for ciliary rootlet coiled-coil rootletin (KIAA0445)
             and two CpG islands, complete sequence
          Length = 93826

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   attcagcacaagaaatcaat 138
             ||||||||||||||||||||
Sbjct: 15037 attcagcacaagaaatcaat 15018

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>emb|AL021920.1|HS163M9 Human DNA sequence from clone RP1-163M9 on chromosome 1p35.1-36.21
             Contains a novel pseudogene, a eukaryotic translation
             initiation factor 1A pseudogene 1 (EIF1AP1), part of a
             novel gene (LOC284729), a macrophage stimulating 1
             (hepatocyte growth factor-like)(MST1) pseudogene and five
             CpG islands, complete sequence
          Length = 118067

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   attcagcacaagaaatcaat 138
             ||||||||||||||||||||
Sbjct: 48460 attcagcacaagaaatcaat 48441

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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 201     aatggcttttttgtttcaaa 220
               ||||||||||||||||||||
Sbjct: 2691148 aatggcttttttgtttcaaa 2691167

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>gb|AC104849.2| Homo sapiens chromosome 3 clone RP11-154D3, complete sequence
          Length = 165849

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    ttttttgtttcaaatctgga 226
              ||||||||||||||||||||
Sbjct: 103467 ttttttgtttcaaatctgga 103448

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>gb|AF480912.1| Legionella pneumophila clone pA37F putative lipoprotein (plpA),
            putative copper efflux ATPase (copA2), chemiosmotic
            efflux system C protein A (cecA), chemiosmotic efflux
            system C protein B (cecB), chemiosmotic efflux system C
            protein C (cecC), putative copper efflux ATPase (copA1),
            chemiosmotic efflux system B protein A (cebA),
            chemiosmotic efflux system B protein B (cebB),
            chemiosmotic efflux system B protein C (cebC), putative
            cation efflux transporter (ctpA), putative cadmium efflux
            ATPase (cadA1), and cadA2 genes, complete cds; and
            unknown genes
          Length = 38800

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  aatggcttttttgtttcaaa 220
            ||||||||||||||||||||
Sbjct: 8184 aatggcttttttgtttcaaa 8203

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>emb|BX005425.12| Zebrafish DNA sequence from clone DKEY-7O6 in linkage group 8, complete
              sequence
          Length = 252440

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 475    attactcaaatttaaattgtaaag 498
              |||| |||||||||||||||||||
Sbjct: 116531 attaatcaaatttaaattgtaaag 116508

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>gb|AC010715.6| Drosophila melanogaster 3L BAC RP98-9G21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174551

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   agaaatcaattggaaaaaca 148
             ||||||||||||||||||||
Sbjct: 73633 agaaatcaattggaaaaaca 73652

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>gb|AC105939.2| Homo sapiens chromosome 3 clone RP11-241A5, complete sequence
          Length = 97387

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   ttttttgtttcaaatctgga 226
             ||||||||||||||||||||
Sbjct: 15709 ttttttgtttcaaatctgga 15690

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>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold
          Length = 489372

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   aatggcttttttgtttcaaa 220
             ||||||||||||||||||||
Sbjct: 25788 aatggcttttttgtttcaaa 25807

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>dbj|AK145723.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0033L07 product:transportin 3, full
            insert sequence
          Length = 2616

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 381  atttcagttcatcctcttgc 400
            ||||||||||||||||||||
Sbjct: 2440 atttcagttcatcctcttgc 2421

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>gb|AY036106.1| Chlamydomonas reinhardtii hydroxyproline-rich glycoprotein VSP4 mRNA,
            complete cds
          Length = 4029

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 293  gcctgtagcccgccaaaatccagc 316
            ||||| ||||||||||||||||||
Sbjct: 1478 gcctgcagcccgccaaaatccagc 1501

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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 128      aagaaatcaattggaaaaac 147
                ||||||||||||||||||||
Sbjct: 10429419 aagaaatcaattggaaaaac 10429400

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>gb|AC007396.6|AC007396 Genomic sequence for Arabidopsis thaliana BAC T4O12 from chromosome I,
             complete sequence
          Length = 95870

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 445   atcaagcttcagaatctcca 464
             ||||||||||||||||||||
Sbjct: 73353 atcaagcttcagaatctcca 73372

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>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1104_G11
          Length = 140093

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 128    aagaaatcaattggaaaaac 147
              ||||||||||||||||||||
Sbjct: 137124 aagaaatcaattggaaaaac 137105

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>dbj|AP005704.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0448B03
          Length = 147748

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 128   aagaaatcaattggaaaaac 147
             ||||||||||||||||||||
Sbjct: 29798 aagaaatcaattggaaaaac 29779

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>emb|AL133444.4|CNS01DV0 Human chromosome 14 DNA sequence BAC R-724F15 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 192387

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   gtttccatatttcaactaga 119
             ||||||||||||||||||||
Sbjct: 82040 gtttccatatttcaactaga 82059

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>gb|AE003563.4| Drosophila melanogaster chromosome 3L, section 22 of 83 of the complete
             sequence
          Length = 264966

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   agaaatcaattggaaaaaca 148
             ||||||||||||||||||||
Sbjct: 22213 agaaatcaattggaaaaaca 22232

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>gb|AC004767.1|AC004767 Drosophila melanogaster DNA sequence (P1s DS01986 (D261), DS01814 (D252),
              and DS08881 (D260)), complete sequence
          Length = 196672

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    agaaatcaattggaaaaaca 148
              ||||||||||||||||||||
Sbjct: 166919 agaaatcaattggaaaaaca 166900

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>gb|AC005492.1|AC005492 Homo sapiens clone UWGC:g1564a021 from 7p14-15, complete sequence
          Length = 40460

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   aaatttaaattgtaaagatt 501
             ||||||||||||||||||||
Sbjct: 20003 aaatttaaattgtaaagatt 20022

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>gb|U84749.1|DMU84749 Drosophila melanogaster cuticle protein LCP65Aa gene, complete cds
          Length = 1585

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  agaaatcaattggaaaaaca 148
            ||||||||||||||||||||
Sbjct: 1199 agaaatcaattggaaaaaca 1218

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>gb|DQ272236.1| Homo sapiens G protein-coupled receptor 154 (GPR154) gene, complete cds
          Length = 195685

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   aaatttaaattgtaaagatt 501
             ||||||||||||||||||||
Sbjct: 74813 aaatttaaattgtaaagatt 74832

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>emb|AL772320.12| Mouse DNA sequence from clone RP23-346F2 on chromosome 4, complete
             sequence
          Length = 211321

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   tttatttgtggacaagagtg 339
             ||||||||||||||||||||
Sbjct: 81599 tttatttgtggacaagagtg 81618


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,161,656
Number of Sequences: 3902068
Number of extensions: 6161656
Number of successful extensions: 114404
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114106
Number of HSP's gapped (non-prelim): 291
length of query: 666
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 643
effective length of database: 17,143,297,704
effective search space: 11023140423672
effective search space used: 11023140423672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result