>NUDC_MOUSE (O35685) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog) (Silica-induced gene 92 protein)
           (SIG-92)
          Length = 332

 Score =  152 bits (383), Expect(2) = 2e-38
 Identities = 68/106 (64%), Positives = 85/106 (80%)
 Frame = -3

Query: 612 NPVKVDDCFWSIEDGKALSILLTKHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPET 433
           N VKV++  W IEDGK +++ L K N+MEWW  ++  DPE++T+K+ PENSKLS+LD ET
Sbjct: 225 NEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSET 284

Query: 432 RQTVEKMMFDQRQKQMGLPTSDEMQKQDMLKKFMSQHPEMDFSNVK 295
           R  VEKMM+DQRQK MGLPTSDE +KQ++LKKFM QHPEMDFS  K
Sbjct: 285 RSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAK 330



 Score = 27.3 bits (59), Expect(2) = 2e-38
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -2

Query: 646 GQPPIIDGELY 614
           GQPP++DGELY
Sbjct: 214 GQPPVVDGELY 224

>NUDC_CHICK (Q5ZIN1) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog)
          Length = 341

 Score =  153 bits (387), Expect(2) = 5e-38
 Identities = 69/106 (65%), Positives = 85/106 (80%)
 Frame = -3

Query: 612 NPVKVDDCFWSIEDGKALSILLTKHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPET 433
           N VKV++  W IEDGK +++ L K N+MEWW  ++  DPE++T+K+ PENSKLS+LD ET
Sbjct: 234 NEVKVEESSWLIEDGKTVTVHLEKINKMEWWNKLVSTDPEINTKKINPENSKLSDLDSET 293

Query: 432 RQTVEKMMFDQRQKQMGLPTSDEMQKQDMLKKFMSQHPEMDFSNVK 295
           R  VEKMM+DQRQK MGLPTSDE +KQD+LKKFM QHPEMDFS  K
Sbjct: 294 RSMVEKMMYDQRQKSMGLPTSDEQKKQDILKKFMEQHPEMDFSKAK 339



 Score = 24.3 bits (51), Expect(2) = 5e-38
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 646 GQPPIIDGELY 614
           G PP+IDGEL+
Sbjct: 223 GHPPVIDGELF 233

>NUDC_HUMAN (Q9Y266) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog)
          Length = 331

 Score =  152 bits (384), Expect(2) = 6e-38
 Identities = 68/106 (64%), Positives = 85/106 (80%)
 Frame = -3

Query: 612 NPVKVDDCFWSIEDGKALSILLTKHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPET 433
           N VKV++  W IEDGK +++ L K N+MEWW  ++  DPE++T+K+ PENSKLS+LD ET
Sbjct: 224 NEVKVEESSWLIEDGKVVTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSET 283

Query: 432 RQTVEKMMFDQRQKQMGLPTSDEMQKQDMLKKFMSQHPEMDFSNVK 295
           R  VEKMM+DQRQK MGLPTSDE +KQ++LKKFM QHPEMDFS  K
Sbjct: 284 RSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAK 329



 Score = 25.0 bits (53), Expect(2) = 6e-38
 Identities = 10/11 (90%), Positives = 10/11 (90%)
 Frame = -2

Query: 646 GQPPIIDGELY 614
           GQP IIDGELY
Sbjct: 213 GQPAIIDGELY 223

>NUDC_RAT (Q63525) Nuclear migration protein nudC (Nuclear distribution|
           protein C homolog) (c15)
          Length = 332

 Score =  152 bits (383), Expect(2) = 1e-37
 Identities = 68/106 (64%), Positives = 85/106 (80%)
 Frame = -3

Query: 612 NPVKVDDCFWSIEDGKALSILLTKHNQMEWWKSVIKGDPEVDTQKVEPENSKLSELDPET 433
           N VKV++  W IEDGK +++ L K N+MEWW  ++  DPE++T+K+ PENSKLS+LD ET
Sbjct: 225 NEVKVEESSWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSET 284

Query: 432 RQTVEKMMFDQRQKQMGLPTSDEMQKQDMLKKFMSQHPEMDFSNVK 295
           R  VEKMM+DQRQK MGLPTSDE +KQ++LKKFM QHPEMDFS  K
Sbjct: 285 RSMVEKMMYDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAK 330



 Score = 24.6 bits (52), Expect(2) = 1e-37
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -2

Query: 646 GQPPIIDGELY 614
           GQ P+IDGELY
Sbjct: 214 GQAPVIDGELY 224

>NUDC_EMENI (P17624) Nuclear movement protein nudC|
          Length = 198

 Score =  135 bits (341), Expect = 8e-32
 Identities = 64/114 (56%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
 Frame = -3

Query: 618 FTNPVKVDDCFWSIED-----GKALSILLTKHNQMEWWKSVIKGDPEVDTQKVEPENSKL 454
           F +P+K  +  W++E      GK +SI L K NQMEWW  V+   P++D  K+ PENS L
Sbjct: 84  FPHPIKPSESSWTLETTSKPPGKEVSIHLDKVNQMEWWAHVVTTAPKIDVSKITPENSSL 143

Query: 453 SELDPETRQTVEKMMFDQRQKQMGLPTSDEMQKQDMLKKFMSQHPEMDFSNVKM 292
           S+LD ETR  VEKMM+DQRQK+MG PTSDE +K D+LKKF  +HPEMDFSN K+
Sbjct: 144 SDLDGETRAMVEKMMYDQRQKEMGAPTSDEQRKMDILKKFQKEHPEMDFSNAKI 197

>ACPM_ARATH (P53665) Acyl carrier protein, mitochondrial precursor (ACP)|
           (NADH-ubiquinone oxidoreductase 9.6 kDa subunit)
           (MtACP-1)
          Length = 122

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
 Frame = -3

Query: 513 VIKGDPEVDTQKVEPENSKLSELDPETRQTVEKMMFDQRQKQMGLP--TSDEMQKQDMLK 340
           V+K  P+VD  KV PE    ++L  ++  TVE +M  + + ++ +P   +D++    +  
Sbjct: 53  VVKSFPKVDPSKVTPEVHFQNDLGLDSLDTVEIVMAIEEEFKLEIPDKEADKIDSCSLAI 112

Query: 339 KFMSQHP 319
           +++  HP
Sbjct: 113 EYVYNHP 119

>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN|
           domain-containing protein 19)
          Length = 518

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = +3

Query: 111 TLCP*EVHLWVLQWKPQSDTKIRSNNQTLNHKTLKLKITRIDVIPP*KTFCISLDPAHLK 290
           T+ P E+  WV +  P++  ++ S  + L  + L++   ++D+          +  AH+ 
Sbjct: 80  TILPTEIETWVREHCPENRERVVSLIEDLQRE-LEIPEQQVDMHDMLLEELAPVGTAHIP 138

Query: 291 PSSHLRSPSL 320
           P+ HL SP+L
Sbjct: 139 PTMHLESPAL 148

>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -3

Query: 507 KGDPEVDTQKVEPENSKLSELDPETRQT-VEKMMFDQRQKQMGLPTSDEMQKQDMLKKFM 331
           +G PE+  +KV+ +           ++   EK +  +RQK++      + QKQ + ++F 
Sbjct: 74  EGTPEMRVKKVQVDRPPQGHSSRWAQKLEAEKRVKQRRQKEV------DQQKQALTQEFW 127

Query: 330 SQHPEMDFSNVKMA*GVLDPRK 265
           + H E    N K+A G L P K
Sbjct: 128 TLHKEPKIWNKKLA-GYLQPSK 148

>SYE1_CAMJR (Q5HUV1) Glutamyl-tRNA synthetase 1 (EC 6.1.1.17) (Glutamate--tRNA|
           ligase 1) (GluRS 1)
          Length = 431

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 242 SSIKNFLHFLGSSTP*AIFTFEKSI 316
           S+I N+L  LG+ TP  IFT EK+I
Sbjct: 256 SAIANYLIMLGNKTPCEIFTLEKAI 280

>IF4G3_HUMAN (O43432) Eukaryotic translation initiation factor 4 gamma 3|
           (eIF-4-gamma 3) (eIF-4G 3) (eIF4G 3) (eIF-4-gamma II)
           (eIF4GII)
          Length = 1585

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -3

Query: 522 WKSVIKGDPEVDTQKVEPENSKLSELDPETRQTVEKM---MFDQRQKQMGLPTSDEMQK 355
           WK   K D + D    +PEN K  EL  + R  + K+   MF+Q  KQ+   T D  ++
Sbjct: 733 WKPSQKRDSQAD----DPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEER 787


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,957,306
Number of Sequences: 219361
Number of extensions: 1762924
Number of successful extensions: 5034
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5034
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)