>Y005_SYNY3 (Q55680) Hypothetical protein sll0005|
          Length = 681

 Score = 47.0 bits (110), Expect(2) = 4e-11
 Identities = 31/75 (41%), Positives = 39/75 (52%)
 Frame = -2

Query: 661 LLKDYSQIPNPYLRDALIELLFKDEKFRWNRLENLLVQGRQDREFVAKDALQPVLKLLLG 482
           LL D S+     LR +L ELLFK+  FRWNRLENLL   +    F     L    + LL 
Sbjct: 480 LLTDQSE----ELRTSLKELLFKEGSFRWNRLENLLRNAKNSPGFDFDYVLNEATEFLLS 535

Query: 481 PDGENLRVLVVKEAV 437
             G+ +R  +V E V
Sbjct: 536 DRGQFIRDRLVAELV 550



 Score = 40.4 bits (93), Expect(2) = 4e-11
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = -1

Query: 701 DPNFKVLAASYPYFAKRLLTD 639
           DPNFKVL+ +YPY AKRLLTD
Sbjct: 463 DPNFKVLSKAYPYIAKRLLTD 483

>Y1919_SYNY3 (P73121) Hypothetical protein slr1919|
          Length = 566

 Score = 50.4 bits (119), Expect(2) = 1e-10
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = -2

Query: 634 NPYLRDALIELLFKDEKFRWNRLENLLVQGRQDREFVAKDALQPVLKLLLGPDGENLR-- 461
           +P LR  LI++LFK+ KF+W RLEN+L   R D +F      Q  L+ L   +G  LR  
Sbjct: 452 SPQLRRQLIDVLFKNGKFQWQRLENMLSIARSDTKFDLLPTAQLGLQFLFSEEGLYLRRQ 511

Query: 460 ---VLVVKEAVRVTESHHLWNTDWFIQCSSRIFEAINIQW 350
               L   + +   E   +W     ++   +  E +N+ W
Sbjct: 512 ILLALTEDDRLHTDEVQRIWG---LVKDDFKPQELVNVAW 548



 Score = 35.0 bits (79), Expect(2) = 1e-10
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -1

Query: 710 LYADPNFKVLAASYPYFAKRLLT 642
           L  DPNFK++  +YPY A+RLLT
Sbjct: 427 LSLDPNFKIVEVAYPYVARRLLT 449

>AROB_CAUCR (Q9A434) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 370

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -2

Query: 637 PNPYLRDALIELLFKDEKFRWNRLENLLVQGRQDREFVAKDALQPVLKLLLGPDG 473
           P P+  DALI    +D+K +  +L  +L +G  D  FVAKD  +  LK  L  +G
Sbjct: 315 PEPFSADALIAHCGQDKKAQGGKLTFVLARGIGD-AFVAKDVDRAALKAFLVEEG 368

>PYRG_CORGL (Q8NQL7) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP|
           synthetase)
          Length = 554

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 255 SSDTFDPSLLQPIVQVLQEREARVFGSRIAGG 160
           SS  FDP+  QP++  ++E++A V G    GG
Sbjct: 414 SSTEFDPAATQPVIATMEEQKAAVSGEADLGG 445

>KCND1_HUMAN (Q9NSA2) Potassium voltage-gated channel subfamily D member 1|
           (Voltage-gated potassium channel subunit Kv4.1)
          Length = 647

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 18/34 (52%), Positives = 21/34 (61%)
 Frame = +2

Query: 101 GAGGILSSCCNKRAARRWETPPAIREPNTRASRS 202
           G G +LSSCC +RA RR     AIR  N+ AS S
Sbjct: 524 GPGSLLSSCCPRRAKRR-----AIRLANSTASVS 552

>GLMS_IDILO (Q5QZH5) Glucosamine--fructose-6-phosphate aminotransferase|
           [isomerizing] (EC 2.6.1.16) (Hexosephosphate
           aminotransferase) (D-fructose-6-phosphate
           amidotransferase) (GFAT)
           (L-glutamine-D-fructose-6-phosphate amidotransferase)
           (Glucosamine-6-ph
          Length = 609

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +3

Query: 159 HLLRYENQTHGLHALVAPVQLAAKDLDQRYQRISKDPIF*EQCLVAPTFVP 311
           HL+ +E +THG   L+A V+ A + L+  Y  +  D  + E+ +VA +  P
Sbjct: 130 HLIHHERKTHG--DLLAAVKSAVRQLEGAYGTVVMDTQYPERLVVARSGSP 178

>RNF39_MACMU (Q5TM52) RING finger protein 39|
          Length = 420

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 232
           S C    ARRW TPPA    +T AS  +C  C + C R
Sbjct: 106 SFCRACLARRWGTPPA---TDTEASPTACPCCGLPCPR 140

>NFIP1_BRARE (Q6DGP4) NEDD4 family-interacting protein 1|
          Length = 210

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -2

Query: 655 KDYSQIPNPYLRDALIELLFKDEKFRWNRLENL-LVQGRQDREFVAKDALQPVLKLLLGP 479
           KD +  PNP   +    L   DE  R     ++ LV GR D +FVA+D  +   +L +G 
Sbjct: 45  KDDAAFPNPPSYNVATSLPSYDEAERTKTETSVPLVSGRDD-DFVARDDFEDADQLRIGN 103

Query: 478 DG 473
           DG
Sbjct: 104 DG 105

>RNF39_PANTR (Q7YR31) RING finger protein 39 (Protein HZFw)|
          Length = 420

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 232
           S C    ARRW TPPA     T AS  +C  C + C R
Sbjct: 106 SFCRACLARRWGTPPA---TGTEASPTACPCCGLPCPR 140

>RNF39_HUMAN (Q9H2S5) RING finger protein 39 (Protein HZFw)|
          Length = 420

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 122 SCCNKRAARRWETPPAIREPNTRAS-RSCSTCTIGCKR 232
           S C    ARRW TPPA     T AS  +C  C + C R
Sbjct: 106 SFCRACLARRWGTPPA---TGTEASPTACPCCGLPCPR 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,690,260
Number of Sequences: 219361
Number of extensions: 2193402
Number of successful extensions: 6095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6095
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)