ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags14m15 |
|---|---|
| Clone Library Name | barley_pub |
>NETB_DROME (Q24568) Netrin-B precursor| Length = 793 Score = 35.8 bits (81), Expect = 0.12 Identities = 15/36 (41%), Positives = 18/36 (50%) Frame = +2 Query: 188 NNFGFSQEHDHWTTFLCICPRNTGGPHETTCDPFFF 295 N+FG S + T C C NT GP C PF+F Sbjct: 445 NHFGRSTQMSAKLTMTCACKHNTAGPECERCKPFYF 480
>NOTC1_MOUSE (Q01705) Neurogenic locus notch homolog protein 1 precursor (Notch| 1) (Motch A) (mT14) (p300) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain] Length = 2531 Score = 28.9 bits (63), Expect(2) = 2.8 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 8/33 (24%) Frame = +1 Query: 295 CSQETDQCDPGGNTCART--------LLDCRCL 369 CSQ+ D+CD G N C +C+CL Sbjct: 409 CSQDVDECDLGANRCEHAGKCLNTLGSFECQCL 441 Score = 20.8 bits (42), Expect(2) = 2.8 Identities = 7/17 (41%), Positives = 8/17 (47%) Frame = +2 Query: 212 HDHWTTFLCICPRNTGG 262 HD +F C CP G Sbjct: 351 HDRVASFYCECPHGRTG 367
>AROE_THEAC (Q9HLE4) Shikimate dehydrogenase (EC 1.1.1.25)| Length = 268 Score = 31.2 bits (69), Expect = 3.1 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 10/92 (10%) Frame = -3 Query: 486 DVLVLNVQDPFQRLLLHGVCEFYN--------VTSTTTGTVQDGKPWKTTTIKK-RSGTG 334 DVL N Q+ + L + G+ N V T GT+ DG P+ T + R+G Sbjct: 147 DVLTRNAQNARRNLDIPGIGLHENIDEDYDIYVNCTPLGTLGDGDPFSTVDFRSGRTGID 206 Query: 333 VAPRITLVSFLRTKKN-GSHVVS*GPPVFLGQ 241 + FL+ +N G VS G VF+GQ Sbjct: 207 LVYNPPDTPFLKRMRNAGGRTVS-GLDVFIGQ 237
>PA22_NAJKA (P00597) Phospholipase A2 isozyme 2 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) (NnkPLA-II) (CM-III) Length = 146 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +1 Query: 295 CSQETDQCDPGGNTCARTLLDCRCLPRLSILHSTRGRRRYVVEL 426 CSQ T C G N CA + DC L + + Y ++L Sbjct: 98 CSQGTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNNNNYNIDL 141
>PA22_NAJAT (Q91133) Phospholipase A2 2 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 146 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +1 Query: 295 CSQETDQCDPGGNTCARTLLDCRCLPRLSILHSTRGRRRYVVEL 426 CSQ T C G N CA + DC L + + Y ++L Sbjct: 98 CSQGTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNNNNYNIDL 141
>PA21_NAJAT (P00598) Phospholipase A2 1 precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) Length = 146 Score = 30.4 bits (67), Expect = 5.2 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +1 Query: 295 CSQETDQCDPGGNTCARTLLDCRCLPRLSILHSTRGRRRYVVEL 426 CSQ T C G N CA + DC L + + Y ++L Sbjct: 98 CSQGTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNNNNYNIDL 141
>METE_BLOFL (Q7VRI8) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 769 Score = 30.4 bits (67), Expect = 5.2 Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Frame = -3 Query: 582 QTREAMKRNFLPELLEIYEERIRAFIEDN-----IDKDVLVLNVQDPFQRLLLHGVCEFY 418 +T+E + + LP LL +Y+E + N ID+ LVL + + + LH + Y Sbjct: 176 ETKEFDRLSLLPSLLLVYKEIFNILSKKNIQWIQIDEPALVLELPQTWLKAYLHAYDQLY 235 Query: 417 NVTSTTTGTVQDGKPWKTTTIKKR 346 T GK + I K+ Sbjct: 236 QTKIKLLLTTYFGKIYHQLPIIKQ 259
>HXA10_MORSA (Q9PWD6) Homeobox protein Hox-A10| Length = 289 Score = 30.0 bits (66), Expect = 6.9 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -2 Query: 340 HRCCPQDHIGQFPENKEERVTRCLVRTPRIPRTNTKE 230 H PQ FP+N +E T CL P+ P+ +T E Sbjct: 20 HPVGPQVAPCSFPQNIKEESTYCLYEQPKCPKASTAE 56
>PA2C_NAJSP (Q92086) Phospholipase A2, acidic C precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) (NAJPLA-2C) (APLA) Length = 146 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +1 Query: 295 CSQETDQCDPGGNTCARTLLDCRCLPRLSILHSTRGRRRYVVEL 426 CSQ T C G N CA + DC L + + Y ++L Sbjct: 98 CSQGTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNDNNYNIDL 141
>PA2B_NAJSP (Q92085) Phospholipase A2, neutral B precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) (NAJPLA-2B) (NPLA) Length = 146 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +1 Query: 295 CSQETDQCDPGGNTCARTLLDCRCLPRLSILHSTRGRRRYVVEL 426 CSQ T C G N CA + DC L + + Y ++L Sbjct: 98 CSQGTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNDNNYNIDL 141
>PA2A_NAJSP (Q92084) Phospholipase A2, neutral A precursor (EC 3.1.1.4)| (Phosphatidylcholine 2-acylhydrolase) (NAJPLA-2A) (NPLA) Length = 146 Score = 29.6 bits (65), Expect = 9.0 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +1 Query: 295 CSQETDQCDPGGNTCARTLLDCRCLPRLSILHSTRGRRRYVVEL 426 CSQ T C G N CA + DC L + + Y ++L Sbjct: 98 CSQGTLTCKGGNNACAAAVCDCDRLAAICFAGAPYNDNNYNIDL 141
>TPOR_HUMAN (P40238) Thrombopoietin receptor precursor (TPO-R)| (Myeloproliferative leukemia protein) (C-mpl) (CD110 antigen) Length = 635 Score = 29.6 bits (65), Expect = 9.0 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -2 Query: 385 RWKAVEDNDNQEAFGH---RCCPQDHIGQFPENKEERVTRCLVRTPRIPRTNTK 233 +W+ + +Q F H RCCP+D + +EE T ++TP+ R + K Sbjct: 302 QWQQQDHASSQGFFYHSRARCCPRDRYPIWENCEEEEKTNPGLQTPQFSRCHFK 355 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,033,292 Number of Sequences: 219361 Number of extensions: 2083527 Number of successful extensions: 5371 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5130 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5370 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6769072002 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
