ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073054.1| Oryza sativa (japonica cultivar-group) cDNA clon... 153 9e-34
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 88 4e-14
4emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 88 4e-14
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
7emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa... 80 1e-11
8gb|AY927891.1| Helicolenus sp. PJS-2005 isolate 23Tasmania contr... 44 0.60
9dbj|AK222432.1| Ciona intestinalis mRNA for zinc finger protein,... 42 2.4
10gb|AC135626.4| Homo sapiens chromosome 15, clone RP11-354B3, com... 42 2.4
11dbj|AK114118.1| Ciona intestinalis cDNA, clone:cicl030a08, full ... 42 2.4
12gb|AC145851.3| Dasypus novemcinctus clone VMRC5-509I16, complete... 40 9.3
13gb|AC167976.4| Mus musculus BAC clone RP23-167L5 from chromosome... 40 9.3
14gb|BT013301.1| Lycopersicon esculentum clone 134935F, mRNA sequence 40 9.3
15gb|AY310774.1| Nicotiana benthamiana clone 8-152 unknown mRNA 40 9.3
16emb|AL139082.18| Human DNA sequence from clone RP11-248G5 on chr... 40 9.3
17gb|AE008872.1| Salmonella typhimurium LT2, section 176 of 220 of... 40 9.3
18gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 9.3
19emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 9.3
20gb|AY899923.1| Salmonella typhimurium isolate L4 plasmid CMY-2 b... 40 9.3
21gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, compl... 40 9.3
22dbj|AB178966.1| Macaca fascicularis testis cDNA clone: QtsA-1033... 40 9.3
23gb|AC092393.3| Homo sapiens chromosome 1 clone RP4-736I12, compl... 40 9.3
24ref|NM_069897.2| Caenorhabditis elegans Dynein Light Chain famil... 40 9.3
25dbj|AB086650.2| Mus musculus gene for polyA polymerase, complete... 40 9.3
26gb|AE014848.1| Plasmodium falciparum 3D7 chromosome 12, section ... 40 9.3
27gb|AC160056.2| Pan troglodytes BAC clone CH251-490K14 from chrom... 40 9.3
28gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 9.3
29emb|Z68507.1|CEM18 Caenorhabditis elegans Cosmid M18, complete s... 40 9.3
30gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 9.3
31gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 9.3
32gb|AY509004.1| Salmonella enterica subsp. enterica serovar Chole... 40 9.3
33gb|AC140350.3| Mus musculus BAC clone RP24-251F16 from 3, comple... 40 9.3
34gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome... 40 9.3 
>dbj|AK073054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033005M04, full
           insert sequence
          Length = 1002

 Score =  153 bits (77), Expect = 9e-34
 Identities = 245/301 (81%)
 Strand = Plus / Minus

                                                                       
Query: 302 aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtc 361
           ||||| || ||||||||||| |||| || | |||||||||| || | |||||||||||  
Sbjct: 840 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 781

                                                                       
Query: 362 gttgtcttccacggctttccatcttgcacagtacccgtggtcgtcgacgttacgttgtag 421
           || || || ||| |||||||||||   || |||  |||||| || || | ||| || |||
Sbjct: 780 gtcgttttacacagctttccatctcttacggtagtcgtggttgtagatgatacattatag 721

                                                                       
Query: 422 aactcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagc 481
           ||||| || ||||| || || ||||| |||||||||||||||||||||||||  ||||||
Sbjct: 720 aactcgcatacaccgtgcaaaagcaatctctgaaatgggtcctggacattcagtacaagc 661

                                                                       
Query: 482 acatctttatcaatattgtcttcaatgaaggccctaatccgctcttcatatatttcaagc 541
           | ||||||| || || ||||||| ||||||| |||||  || ||||| ||||||||||| 
Sbjct: 660 atatctttaccactagtgtcttcgatgaaggtcctaactcgttcttcgtatatttcaaga 601

                                                                       
Query: 542 agttcaggtaggaagtttctcttcatagcttctcttgtttggcaatctatacgacgccaa 601
           || || || ||||| |||||||| || |||||||||||||| | ||||||| || |||||
Sbjct: 600 agatctgggaggaaatttctctttatggcttctcttgtttgacgatctatatgatgccaa 541

            
Query: 602 g 602
           |
Sbjct: 540 g 540
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 424     ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 483
               |||||| |||||||| |  |||||||||||||| || |||||||||||||  ||||||||
Sbjct: 2173555 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 2173496

                                                   
Query: 484     atctttatcaatattgtcttcaatgaaggccctaat 519
               ||||||| || ||   ||||||||||||||||||||
Sbjct: 2173495 atctttaccactagcatcttcaatgaaggccctaat 2173460



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 527     tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 586
               |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| |
Sbjct: 2172226 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 2172167

                                   
Query: 587     tctatacgacgccaagcatt 606
               ||||||||| ||||||||||
Sbjct: 2172166 tctatacgatgccaagcatt 2172147
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                           
Query: 424     ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 483
               |||||| |||||||| |  |||||||||||||| || |||||||||||||  ||||||||
Sbjct: 2173499 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 2173440

                                                   
Query: 484     atctttatcaatattgtcttcaatgaaggccctaat 519
               ||||||| || ||   ||||||||||||||||||||
Sbjct: 2173439 atctttaccactagcatcttcaatgaaggccctaat 2173404



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 527     tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 586
               |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| |
Sbjct: 2172170 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 2172111

                                   
Query: 587     tctatacgacgccaagcatt 606
               ||||||||| ||||||||||
Sbjct: 2172110 tctatacgatgccaagcatt 2172091
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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 83/96 (86%)
 Strand = Plus / Minus

                                                                         
Query: 424   ctcacacacaccatgtaatagcaacctctgaaatgggtcctggacattcaacacaagcac 483
             |||||| |||||||| |  |||||||||||||| || |||||||||||||  ||||||||
Sbjct: 55779 ctcacatacaccatgcagaagcaacctctgaaacggatcctggacattcagtacaagcac 55720

                                                 
Query: 484   atctttatcaatattgtcttcaatgaaggccctaat 519
             ||||||| || ||   ||||||||||||||||||||
Sbjct: 55719 atctttaccactagcatcttcaatgaaggccctaat 55684



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                         
Query: 527   tcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggcaa 586
             |||||||| |||||||| || || ||||| |||||||| || |||||||||||||||| |
Sbjct: 54450 tcatatatgtcaagcagatctgggaggaaatttctctttatggcttctcttgtttggcga 54391

                                 
Query: 587   tctatacgacgccaagcatt 606
             ||||||||| ||||||||||
Sbjct: 54390 tctatacgatgccaagcatt 54371
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                           
Query: 443     agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 502
               ||||| |||||||||||||||||||||||||  ||||||| ||||||| || || |||||
Sbjct: 2130489 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 2130430

                               
Query: 503     tcaatgaaggccctaa 518
               || ||||||| |||||
Sbjct: 2130429 tcgatgaaggtcctaa 2130414



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                           
Query: 525     cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 584
               |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| |
Sbjct: 2129492 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 2129433

                                 
Query: 585     aatctatacgacgccaag 602
                ||||||| || ||||||
Sbjct: 2129432 gatctatatgatgccaag 2129415



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                           
Query: 302     aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtc 361
               ||||| || ||||||||||| |||| || | |||||||||| || | |||||||||||  
Sbjct: 2130716 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 2130657

                                       
Query: 362     gttgtcttccacggctttccatct 385
               || || || ||| |||||||||||
Sbjct: 2130656 gtcgttttacacagctttccatct 2130633
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                           
Query: 443     agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 502
               ||||| |||||||||||||||||||||||||  ||||||| ||||||| || || |||||
Sbjct: 2138270 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 2138211

                               
Query: 503     tcaatgaaggccctaa 518
               || ||||||| |||||
Sbjct: 2138210 tcgatgaaggtcctaa 2138195



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                           
Query: 525     cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 584
               |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| |
Sbjct: 2137273 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 2137214

                                 
Query: 585     aatctatacgacgccaag 602
                ||||||| || ||||||
Sbjct: 2137213 gatctatatgatgccaag 2137196



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                           
Query: 302     aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtc 361
               ||||| || ||||||||||| |||| || | |||||||||| || | |||||||||||  
Sbjct: 2138497 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 2138438

                                       
Query: 362     gttgtcttccacggctttccatct 385
               || || || ||| |||||||||||
Sbjct: 2138437 gtcgttttacacagctttccatct 2138414
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>emb|BX000499.1|CNS08CDP Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 125593

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Minus

                                                                         
Query: 443   agcaacctctgaaatgggtcctggacattcaacacaagcacatctttatcaatattgtct 502
             ||||| |||||||||||||||||||||||||  ||||||| ||||||| || || |||||
Sbjct: 27183 agcaatctctgaaatgggtcctggacattcagtacaagcatatctttaccactagtgtct 27124

                             
Query: 503   tcaatgaaggccctaa 518
             || ||||||| |||||
Sbjct: 27123 tcgatgaaggtcctaa 27108



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                         
Query: 525   cttcatatatttcaagcagttcaggtaggaagtttctcttcatagcttctcttgtttggc 584
             |||| ||||||||||| || || || ||||| |||||||| || |||||||||||||| |
Sbjct: 26186 cttcgtatatttcaagaagatctgggaggaaatttctctttatggcttctcttgtttgac 26127

                               
Query: 585   aatctatacgacgccaag 602
              ||||||| || ||||||
Sbjct: 26126 gatctatatgatgccaag 26109



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                         
Query: 302   aggaaactgaccaatgtgatcctgggggcaacacctgtgcccgaacgcttcttgattgtc 361
             ||||| || ||||||||||| |||| || | |||||||||| || | |||||||||||  
Sbjct: 27410 aggaagctaaccaatgtgattctggagggagcacctgtgcctgatctcttcttgattgct 27351

                                     
Query: 362   gttgtcttccacggctttccatct 385
             || || || ||| |||||||||||
Sbjct: 27350 gtcgttttacacagctttccatct 27327
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>gb|AY927891.1| Helicolenus sp. PJS-2005 isolate 23Tasmania control region gene,
           complete sequence; mitochondrial
          Length = 443

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 171 taagcaaaacctaaagaaacaa 192
           ||||||||||||||||||||||
Sbjct: 199 taagcaaaacctaaagaaacaa 220
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>dbj|AK222432.1| Ciona intestinalis mRNA for zinc finger protein, complete cds,
           clone: cibd006i17
          Length = 2104

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 523 ctcttcatatatttcaagcag 543
           |||||||||||||||||||||
Sbjct: 886 ctcttcatatatttcaagcag 866
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>gb|AC135626.4| Homo sapiens chromosome 15, clone RP11-354B3, complete sequence
          Length = 180684

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 182   taaagaaacaactttggcttc 202
             |||||||||||||||||||||
Sbjct: 72266 taaagaaacaactttggcttc 72246
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>dbj|AK114118.1| Ciona intestinalis cDNA, clone:cicl030a08, full insert sequence
          Length = 1573

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 523 ctcttcatatatttcaagcag 543
           |||||||||||||||||||||
Sbjct: 848 ctcttcatatatttcaagcag 828
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>gb|AC145851.3| Dasypus novemcinctus clone VMRC5-509I16, complete sequence
          Length = 123145

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 554   aagtttctcttcatagcttc 573
             ||||||||||||||||||||
Sbjct: 33460 aagtttctcttcatagcttc 33479
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>gb|AC167976.4| Mus musculus BAC clone RP23-167L5 from chromosome 3, complete sequence
          Length = 211791

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 613    aattaactcatcttcattca 632
              ||||||||||||||||||||
Sbjct: 183285 aattaactcatcttcattca 183266
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>gb|BT013301.1| Lycopersicon esculentum clone 134935F, mRNA sequence
          Length = 1166

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 415 gttgtagaactcacacacaccatg 438
           ||||||||||||||| ||||||||
Sbjct: 741 gttgtagaactcacaaacaccatg 718
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>gb|AY310774.1| Nicotiana benthamiana clone 8-152 unknown mRNA
          Length = 407

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 25  gtttggcaccaccaccagtaggctggca 52
           |||| |||| ||||||||||||||||||
Sbjct: 142 gtttagcacgaccaccagtaggctggca 115
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>emb|AL139082.18| Human DNA sequence from clone RP11-248G5 on chromosome 13q14.3-21.1
             Contains the 5' end of the ATP7B gene for ATPase, Cu++
             transporting, beta polypeptide (Wilson disease), four
             novel genes,  the NEK3 gene for NIMA (never in mitosis
             gene a)-related kinase 3, the 3' end of a novel gene and
             five CpG islands, complete sequence
          Length = 187691

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ctttggcttctcccaggagc 212
             ||||||||||||||||||||
Sbjct: 90181 ctttggcttctcccaggagc 90162
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>gb|AE008872.1| Salmonella typhimurium LT2, section 176 of 220 of the complete genome
          Length = 20456

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 15   tgaaaacattgtttggcaccaccaccag 42
            ||||||||| | ||||||||||||||||
Sbjct: 4508 tgaaaacatggcttggcaccaccaccag 4535
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    taaagaaacaactttggctt 201
              ||||||||||||||||||||
Sbjct: 655336 taaagaaacaactttggctt 655317
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>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 16/20
          Length = 245050

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 15     tgaaaacattgtttggcaccaccaccag 42
              ||||||||| | ||||||||||||||||
Sbjct: 225364 tgaaaacatggcttggcaccaccaccag 225337
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>gb|AY899923.1| Salmonella typhimurium isolate L4 plasmid CMY-2 beta-lactamase
            (blaCMY-2), Blc (blc), SugE (sugE), and FinQ (finQ)
            genes, complete cds; and TrbA (trbA) gene, partial cds
          Length = 5429

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 149  taatttacatatgtgtacatccta 172
            ||||||| ||||||||||||||||
Sbjct: 3962 taatttagatatgtgtacatccta 3939
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>gb|AC106806.2| Homo sapiens chromosome 5 clone RP11-510I6, complete sequence
          Length = 162485

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 487   tttatcaatattgtcttcaa 506
             ||||||||||||||||||||
Sbjct: 86297 tttatcaatattgtcttcaa 86316
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>dbj|AB178966.1| Macaca fascicularis testis cDNA clone: QtsA-10335, similar to human
            Nedd4 binding protein 2 (N4BP2), mRNA, RefSeq:
            NM_018177.2
          Length = 2681

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                        
Query: 619  ctcatcttcattcataagattcttctgc 646
            ||||||||||||||||| ||||||||||
Sbjct: 1527 ctcatcttcattcataa-attcttctgc 1501
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>gb|AC092393.3| Homo sapiens chromosome 1 clone RP4-736I12, complete sequence
          Length = 90526

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 185   agaaacaactttggcttctc 204
             ||||||||||||||||||||
Sbjct: 22764 agaaacaactttggcttctc 22745
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>ref|NM_069897.2| Caenorhabditis elegans Dynein Light Chain family member (dlc-2)
           (dlc-2) mRNA, complete cds
          Length = 459

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 481 cacatctttatcaatattgt 500
           ||||||||||||||||||||
Sbjct: 191 cacatctttatcaatattgt 172
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>dbj|AB086650.2| Mus musculus gene for polyA polymerase, complete cds
          Length = 15896

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 418  gtagaactcacacacaccat 437
            ||||||||||||||||||||
Sbjct: 5951 gtagaactcacacacaccat 5970
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>gb|AE014848.1| Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete
             sequence
          Length = 250707

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 615   ttaactcatcttcattcata 634
             ||||||||||||||||||||
Sbjct: 18792 ttaactcatcttcattcata 18811
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>gb|AC160056.2| Pan troglodytes BAC clone CH251-490K14 from chromosome unknown, complete
              sequence
          Length = 180991

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    ttcttgattgtcgttgtctt 369
              ||||||||||||||||||||
Sbjct: 104234 ttcttgattgtcgttgtctt 104215
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 15      tgaaaacattgtttggcaccaccaccag 42
               ||||||||| | ||||||||||||||||
Sbjct: 3683718 tgaaaacatggcttggcaccaccaccag 3683745
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>emb|Z68507.1|CEM18 Caenorhabditis elegans Cosmid M18, complete sequence
          Length = 26542

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   cacatctttatcaatattgt 500
             ||||||||||||||||||||
Sbjct: 11344 cacatctttatcaatattgt 11363
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 15      tgaaaacattgtttggcaccaccaccag 42
               ||||||||| | ||||||||||||||||
Sbjct: 3938863 tgaaaacatggcttggcaccaccaccag 3938836
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 15      tgaaaacattgtttggcaccaccaccag 42
               ||||||||| | ||||||||||||||||
Sbjct: 3838275 tgaaaacatggcttggcaccaccaccag 3838302
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>gb|AY509004.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
             plasmid pSC138, complete sequence
          Length = 138742

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 149   taatttacatatgtgtacatccta 172
             ||||||| ||||||||||||||||
Sbjct: 73159 taatttagatatgtgtacatccta 73136
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>gb|AC140350.3| Mus musculus BAC clone RP24-251F16 from 3, complete sequence
          Length = 162787

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 613   aattaactcatcttcattca 632
             ||||||||||||||||||||
Sbjct: 22917 aattaactcatcttcattca 22898
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>gb|AC158526.3| Mus musculus BAC clone RP23-288A9 from chromosome 12, complete sequence
          Length = 236362

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   gtagaactcacacacaccat 437
             ||||||||||||||||||||
Sbjct: 26811 gtagaactcacacacaccat 26792


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,824,684
Number of Sequences: 3902068
Number of extensions: 6824684
Number of successful extensions: 124693
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124402
Number of HSP's gapped (non-prelim): 291
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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