ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15b10 |
|---|---|
| Clone Library Name | barley_pub |
>SC23A_MOUSE (Q01405) Protein transport protein Sec23A (SEC23-related protein A)| Length = 765 Score = 146 bits (369), Expect = 4e-35 Identities = 73/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%) Frame = -2 Query: 584 MIQPSLLSYSFQSGPMPVXLXATAIAXDKILLLDSYFSVVIFHGMNIAQWRNAGYQDQEG 405 MIQP L +YSF P PV L +++I D+ILL+D++F ++I+HG IAQWR +GYQD Sbjct: 618 MIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPE 677 Query: 404 HEVFAQLLKAPHEEADTIMKERFPVPRLVVCDQYGSQARFLLAKLNPSVAYNSDNP--AP 231 +E F LL+AP ++A I+ RFP+PR + + GSQARFLL+K+NPS +N+ Sbjct: 678 YENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQE 737 Query: 230 GGDVIFTDDVSFEVFMDHLQRLAV 159 G I TDDVS +VFMDHL++LAV Sbjct: 738 SGAPILTDDVSLQVFMDHLKKLAV 761
>SC23A_HUMAN (Q15436) Protein transport protein Sec23A (SEC23-related protein A)| Length = 765 Score = 146 bits (369), Expect = 4e-35 Identities = 73/144 (50%), Positives = 100/144 (69%), Gaps = 2/144 (1%) Frame = -2 Query: 584 MIQPSLLSYSFQSGPMPVXLXATAIAXDKILLLDSYFSVVIFHGMNIAQWRNAGYQDQEG 405 MIQP L +YSF P PV L +++I D+ILL+D++F ++I+HG IAQWR +GYQD Sbjct: 618 MIQPILYAYSFSGPPEPVLLDSSSILADRILLMDTFFQILIYHGETIAQWRKSGYQDMPE 677 Query: 404 HEVFAQLLKAPHEEADTIMKERFPVPRLVVCDQYGSQARFLLAKLNPSVAYNSDNP--AP 231 +E F LL+AP ++A I+ RFP+PR + + GSQARFLL+K+NPS +N+ Sbjct: 678 YENFRHLLQAPVDDAQEILHSRFPMPRYIDTEHGGSQARFLLSKVNPSQTHNNMYAWGQE 737 Query: 230 GGDVIFTDDVSFEVFMDHLQRLAV 159 G I TDDVS +VFMDHL++LAV Sbjct: 738 SGAPILTDDVSLQVFMDHLKKLAV 761
>SC23B_MOUSE (Q9D662) Protein transport protein Sec23B (SEC23-related protein B)| Length = 767 Score = 145 bits (366), Expect = 9e-35 Identities = 76/148 (51%), Positives = 102/148 (68%), Gaps = 6/148 (4%) Frame = -2 Query: 584 MIQPSLLSYSFQSGPMPVXLXATAIAXDKILLLDSYFSVVIFHGMNIAQWRNAGYQDQEG 405 MIQP L SYSF P PV L +++I D+ILL+D++F +VI+ G IAQWR AGYQD Sbjct: 620 MIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPE 679 Query: 404 HEVFAQLLKAPHEEADTIMKERFPVPRLVVCDQYGSQARFLLAKLNPSVAYNS------D 243 +E F LL+AP ++A I++ RFP+PR + + GSQARFLL+K+NPS +N+ + Sbjct: 680 YENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQE 739 Query: 242 NPAPGGDVIFTDDVSFEVFMDHLQRLAV 159 AP I TDDVS +VFMDHL++LAV Sbjct: 740 TGAP----ILTDDVSLQVFMDHLKKLAV 763
>SC23B_HUMAN (Q15437) Protein transport protein Sec23B (SEC23-related protein B)| Length = 767 Score = 145 bits (366), Expect = 9e-35 Identities = 76/148 (51%), Positives = 102/148 (68%), Gaps = 6/148 (4%) Frame = -2 Query: 584 MIQPSLLSYSFQSGPMPVXLXATAIAXDKILLLDSYFSVVIFHGMNIAQWRNAGYQDQEG 405 MIQP L SYSF P PV L +++I D+ILL+D++F +VI+ G IAQWR AGYQD Sbjct: 620 MIQPILYSYSFHGPPEPVLLDSSSILADRILLMDTFFQIVIYLGETIAQWRKAGYQDMPE 679 Query: 404 HEVFAQLLKAPHEEADTIMKERFPVPRLVVCDQYGSQARFLLAKLNPSVAYNS------D 243 +E F LL+AP ++A I++ RFP+PR + + GSQARFLL+K+NPS +N+ + Sbjct: 680 YENFKHLLQAPLDDAQEILQARFPMPRYINTEHGGSQARFLLSKVNPSQTHNNLYAWGQE 739 Query: 242 NPAPGGDVIFTDDVSFEVFMDHLQRLAV 159 AP I TDDVS +VFMDHL++LAV Sbjct: 740 TGAP----ILTDDVSLQVFMDHLKKLAV 763
>SEC23_YEAST (P15303) Protein transport protein SEC23| Length = 768 Score = 136 bits (343), Expect = 4e-32 Identities = 69/142 (48%), Positives = 95/142 (66%) Frame = -2 Query: 584 MIQPSLLSYSFQSGPMPVXLXATAIAXDKILLLDSYFSVVIFHGMNIAQWRNAGYQDQEG 405 MIQP+L S+S + P PV L + ++ + ILLLD++F ++I+HG IAQWR AGYQD Sbjct: 624 MIQPTLTSFSMEDDPQPVLLDSISVKPNTILLLDTFFFILIYHGEQIAQWRKAGYQDDPQ 683 Query: 404 HEVFAQLLKAPHEEADTIMKERFPVPRLVVCDQYGSQARFLLAKLNPSVAYNSDNPAPGG 225 + F LL+ P EA ++ +RFP+PR + + GSQARFLL+KLNPS Y D G Sbjct: 684 YADFKALLEEPKLEAAELLVDRFPLPRFIDTEAGGSQARFLLSKLNPSDNY-QDMARGGS 742 Query: 224 DVIFTDDVSFEVFMDHLQRLAV 159 ++ TDDVS + FM HLQ++AV Sbjct: 743 TIVLTDDVSLQNFMTHLQQVAV 764
>IPIA_TOBAC (Q03198) Proteinase inhibitor I-A precursor (PI-IA) (Inhibitor of| microbial serine proteinases minor isoform) Length = 107 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/54 (38%), Positives = 27/54 (50%) Frame = +3 Query: 396 HLVAFLILVARISPLCNVHPMEDNDRKIRIQQKDLVXSNCSCVQXNRHWP*LKG 557 H+VAFL+L + I PL D +I + Q D+ S C V R WP L G Sbjct: 6 HVVAFLLLASLIQPL------TARDLEINVLQLDVSQSGCPGVTKER-WPELLG 52
>IPIB_TOBAC (Q03199) Proteinase inhibitor I-B precursor (PI-IB) (Inhibitor of| microbial serine proteinases major isoform) Length = 107 Score = 30.0 bits (66), Expect = 5.2 Identities = 20/54 (37%), Positives = 26/54 (48%) Frame = +3 Query: 396 HLVAFLILVARISPLCNVHPMEDNDRKIRIQQKDLVXSNCSCVQXNRHWP*LKG 557 H+VAFL+L + PL D +I + Q D+ S C V R WP L G Sbjct: 6 HVVAFLLLASLFQPL------TARDLEINVLQLDVSQSGCPGVTKER-WPELLG 52
>RASF7_HUMAN (Q02833) Ras association domain-containing protein 7 (HRAS1-related| cluster protein 1) Length = 373 Score = 29.6 bits (65), Expect = 6.8 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -2 Query: 413 QEGHEVFAQLLKAPHEEADTIMKERFPVPRLVVCDQYGSQARFLLAKLNPSVA 255 Q G V Q L+ E+ ++ + PV C Q+ S +F+L + PS+A Sbjct: 43 QTGRFVLVQRLR---EKERQLLPQECPVGAQATCGQFASDVQFVLRRTGPSLA 92
>HCYG_OCTDO (O61363) Hemocyanin G-type, units Oda to Odg| Length = 2896 Score = 29.6 bits (65), Expect = 6.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -2 Query: 461 FHGMNIAQWRNAGYQDQEGHEVFAQLL 381 FHGMNI Q NA ++ Q VFA L Sbjct: 2365 FHGMNIDQLENAIHKQQNKDRVFASFL 2391
>HCYA_OCTDO (P12659) Hemocyanin A-type, units Ode to Odg (Fragment)| Length = 1233 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = -2 Query: 461 FHGMNIAQWRNAGYQDQEGHEVFAQLL 381 FHGMNI Q NA ++ Q VFA L Sbjct: 702 FHGMNIDQLENAIHKTQNKDRVFASFL 728 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,899,854 Number of Sequences: 219361 Number of extensions: 1745450 Number of successful extensions: 4409 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4305 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4404 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
