ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags15b09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467770.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2534 Score = 581 bits (293), Expect = e-162 Identities = 479/541 (88%) Strand = Plus / Minus Query: 133 ccttttatgcaagatagcgatataattttctatctgctttgtccctctctaagaattcac 192 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 2312 ccttctatgcaagatagcgatataacttcctatctgctttgtccctctctaagaattcac 2253 Query: 193 gctcgatcagagattctatgcgtttctttatgataacagggtttggcaagaaccgtgctt 252 |||| || ||||||||||||||||||||||||| |||||| || |||| ||| || |||| Sbjct: 2252 gctcaattagagattctatgcgtttctttatgacaacaggattcggcatgaatcgggctt 2193 Query: 253 gcaattgcttggtgacctcggagacaatactgttatgatccaagaccctcctagatttca 312 ||||||||||||| ||||| | ||||| ||||||||||||||||||||||| ||||||| Sbjct: 2192 gcaattgcttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttca 2133 Query: 313 tgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctggcggg 372 | ||||| ||||| || |||||||| |||||||||||||||||||||||||| || || | Sbjct: 2132 taatcctgacgatagcagcctcaatttgaggtttcctgtcctcctcaacccgttgacgag 2073 Query: 373 tctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcaccttaa 432 |||| || ||||||||||||||||||||| |||||| |||||||| ||||| ||||||| Sbjct: 2072 tctcttgtttctctggctcagattccttttgcgccactactgtcccaatcttgaccttaa 2013 Query: 433 caagcttgcttgtgaacttgtcattgaagaagaatgtgtcatcctctgatatgtccttgc 492 |||||||||||||||||||||| |||||| |||||||||||||||| ||||| || |||| Sbjct: 2012 caagcttgcttgtgaacttgtcgttgaagtagaatgtgtcatcctccgatatatctttgc 1953 Query: 493 tcatgggctctttacggagaacattcttccccttgacacaagcaagagactggagacatc 552 ||||||| || || ||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 1952 tcatgggttccttgcggagaacattcttccccttgacacaagcaagagattgaaggcatc 1893 Query: 553 tctttaggtctgtggaaggtatctctgtagcttgctcgatgtctttgtaggtaagtccat 612 ||||||| || | || ||||||| | ||| |||| ||||||||||||||||| | |||| Sbjct: 1892 tctttagatccgaggcaggtatcgcagtatcttgttcgatgtctttgtaggttaacccat 1833 Query: 613 cagaagagttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgct 672 | | ||| ||||||| ||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 1832 cggtagaattaaacagcatgagaacacacatctgataagtggatacatttagttcatgct 1773 Query: 673 t 673 | Sbjct: 1772 t 1772
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 581 bits (293), Expect = e-162 Identities = 479/541 (88%) Strand = Plus / Plus Query: 133 ccttttatgcaagatagcgatataattttctatctgctttgtccctctctaagaattcac 192 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 31328469 ccttctatgcaagatagcgatataacttcctatctgctttgtccctctctaagaattcac 31328528 Query: 193 gctcgatcagagattctatgcgtttctttatgataacagggtttggcaagaaccgtgctt 252 |||| || ||||||||||||||||||||||||| |||||| || |||| ||| || |||| Sbjct: 31328529 gctcaattagagattctatgcgtttctttatgacaacaggattcggcatgaatcgggctt 31328588 Query: 253 gcaattgcttggtgacctcggagacaatactgttatgatccaagaccctcctagatttca 312 ||||||||||||| ||||| | ||||| ||||||||||||||||||||||| ||||||| Sbjct: 31328589 gcaattgcttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttca 31328648 Query: 313 tgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctggcggg 372 | ||||| ||||| || |||||||| |||||||||||||||||||||||||| || || | Sbjct: 31328649 taatcctgacgatagcagcctcaatttgaggtttcctgtcctcctcaacccgttgacgag 31328708 Query: 373 tctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcaccttaa 432 |||| || ||||||||||||||||||||| |||||| |||||||| ||||| ||||||| Sbjct: 31328709 tctcttgtttctctggctcagattccttttgcgccactactgtcccaatcttgaccttaa 31328768 Query: 433 caagcttgcttgtgaacttgtcattgaagaagaatgtgtcatcctctgatatgtccttgc 492 |||||||||||||||||||||| |||||| |||||||||||||||| ||||| || |||| Sbjct: 31328769 caagcttgcttgtgaacttgtcgttgaagtagaatgtgtcatcctccgatatatctttgc 31328828 Query: 493 tcatgggctctttacggagaacattcttccccttgacacaagcaagagactggagacatc 552 ||||||| || || ||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 31328829 tcatgggttccttgcggagaacattcttccccttgacacaagcaagagattgaaggcatc 31328888 Query: 553 tctttaggtctgtggaaggtatctctgtagcttgctcgatgtctttgtaggtaagtccat 612 ||||||| || | || ||||||| | ||| |||| ||||||||||||||||| | |||| Sbjct: 31328889 tctttagatccgaggcaggtatcgcagtatcttgttcgatgtctttgtaggttaacccat 31328948 Query: 613 cagaagagttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgct 672 | | ||| ||||||| ||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 31328949 cggtagaattaaacagcatgagaacacacatctgataagtggatacatttagttcatgct 31329008 Query: 673 t 673 | Sbjct: 31329009 t 31329009
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03 Length = 119796 Score = 581 bits (293), Expect = e-162 Identities = 479/541 (88%) Strand = Plus / Plus Query: 133 ccttttatgcaagatagcgatataattttctatctgctttgtccctctctaagaattcac 192 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 11043 ccttctatgcaagatagcgatataacttcctatctgctttgtccctctctaagaattcac 11102 Query: 193 gctcgatcagagattctatgcgtttctttatgataacagggtttggcaagaaccgtgctt 252 |||| || ||||||||||||||||||||||||| |||||| || |||| ||| || |||| Sbjct: 11103 gctcaattagagattctatgcgtttctttatgacaacaggattcggcatgaatcgggctt 11162 Query: 253 gcaattgcttggtgacctcggagacaatactgttatgatccaagaccctcctagatttca 312 ||||||||||||| ||||| | ||||| ||||||||||||||||||||||| ||||||| Sbjct: 11163 gcaattgcttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttca 11222 Query: 313 tgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctggcggg 372 | ||||| ||||| || |||||||| |||||||||||||||||||||||||| || || | Sbjct: 11223 taatcctgacgatagcagcctcaatttgaggtttcctgtcctcctcaacccgttgacgag 11282 Query: 373 tctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcaccttaa 432 |||| || ||||||||||||||||||||| |||||| |||||||| ||||| ||||||| Sbjct: 11283 tctcttgtttctctggctcagattccttttgcgccactactgtcccaatcttgaccttaa 11342 Query: 433 caagcttgcttgtgaacttgtcattgaagaagaatgtgtcatcctctgatatgtccttgc 492 |||||||||||||||||||||| |||||| |||||||||||||||| ||||| || |||| Sbjct: 11343 caagcttgcttgtgaacttgtcgttgaagtagaatgtgtcatcctccgatatatctttgc 11402 Query: 493 tcatgggctctttacggagaacattcttccccttgacacaagcaagagactggagacatc 552 ||||||| || || ||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 11403 tcatgggttccttgcggagaacattcttccccttgacacaagcaagagattgaaggcatc 11462 Query: 553 tctttaggtctgtggaaggtatctctgtagcttgctcgatgtctttgtaggtaagtccat 612 ||||||| || | || ||||||| | ||| |||| ||||||||||||||||| | |||| Sbjct: 11463 tctttagatccgaggcaggtatcgcagtatcttgttcgatgtctttgtaggttaacccat 11522 Query: 613 cagaagagttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgct 672 | | ||| ||||||| ||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 11523 cggtagaattaaacagcatgagaacacacatctgataagtggatacatttagttcatgct 11582 Query: 673 t 673 | Sbjct: 11583 t 11583
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 581 bits (293), Expect = e-162 Identities = 479/541 (88%) Strand = Plus / Plus Query: 133 ccttttatgcaagatagcgatataattttctatctgctttgtccctctctaagaattcac 192 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 98337 ccttctatgcaagatagcgatataacttcctatctgctttgtccctctctaagaattcac 98396 Query: 193 gctcgatcagagattctatgcgtttctttatgataacagggtttggcaagaaccgtgctt 252 |||| || ||||||||||||||||||||||||| |||||| || |||| ||| || |||| Sbjct: 98397 gctcaattagagattctatgcgtttctttatgacaacaggattcggcatgaatcgggctt 98456 Query: 253 gcaattgcttggtgacctcggagacaatactgttatgatccaagaccctcctagatttca 312 ||||||||||||| ||||| | ||||| ||||||||||||||||||||||| ||||||| Sbjct: 98457 gcaattgcttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttca 98516 Query: 313 tgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctggcggg 372 | ||||| ||||| || |||||||| |||||||||||||||||||||||||| || || | Sbjct: 98517 taatcctgacgatagcagcctcaatttgaggtttcctgtcctcctcaacccgttgacgag 98576 Query: 373 tctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcaccttaa 432 |||| || ||||||||||||||||||||| |||||| |||||||| ||||| ||||||| Sbjct: 98577 tctcttgtttctctggctcagattccttttgcgccactactgtcccaatcttgaccttaa 98636 Query: 433 caagcttgcttgtgaacttgtcattgaagaagaatgtgtcatcctctgatatgtccttgc 492 |||||||||||||||||||||| |||||| |||||||||||||||| ||||| || |||| Sbjct: 98637 caagcttgcttgtgaacttgtcgttgaagtagaatgtgtcatcctccgatatatctttgc 98696 Query: 493 tcatgggctctttacggagaacattcttccccttgacacaagcaagagactggagacatc 552 ||||||| || || ||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 98697 tcatgggttccttgcggagaacattcttccccttgacacaagcaagagattgaaggcatc 98756 Query: 553 tctttaggtctgtggaaggtatctctgtagcttgctcgatgtctttgtaggtaagtccat 612 ||||||| || | || ||||||| | ||| |||| ||||||||||||||||| | |||| Sbjct: 98757 tctttagatccgaggcaggtatcgcagtatcttgttcgatgtctttgtaggttaacccat 98816 Query: 613 cagaagagttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgct 672 | | ||| ||||||| ||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 98817 cggtagaattaaacagcatgagaacacacatctgataagtggatacatttagttcatgct 98876 Query: 673 t 673 | Sbjct: 98877 t 98877
>dbj|AK072402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079J03, full insert sequence Length = 2535 Score = 581 bits (293), Expect = e-162 Identities = 479/541 (88%) Strand = Plus / Minus Query: 133 ccttttatgcaagatagcgatataattttctatctgctttgtccctctctaagaattcac 192 |||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 2312 ccttctatgcaagatagcgatataacttcctatctgctttgtccctctctaagaattcac 2253 Query: 193 gctcgatcagagattctatgcgtttctttatgataacagggtttggcaagaaccgtgctt 252 |||| || ||||||||||||||||||||||||| |||||| || |||| ||| || |||| Sbjct: 2252 gctcaattagagattctatgcgtttctttatgacaacaggattcggcatgaatcgggctt 2193 Query: 253 gcaattgcttggtgacctcggagacaatactgttatgatccaagaccctcctagatttca 312 ||||||||||||| ||||| | ||||| ||||||||||||||||||||||| ||||||| Sbjct: 2192 gcaattgcttggtaacctcagctacaatgctgttatgatccaagaccctcctggatttca 2133 Query: 313 tgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctggcggg 372 | ||||| ||||| || |||||||| |||||||||||||||||||||||||| || || | Sbjct: 2132 taatcctgacgatagcagcctcaatttgaggtttcctgtcctcctcaacccgttgacgag 2073 Query: 373 tctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcaccttaa 432 |||| || ||||||||||||||||||||| |||||| |||||||| ||||| ||||||| Sbjct: 2072 tctcttgtttctctggctcagattccttttgcgccactactgtcccaatcttgaccttaa 2013 Query: 433 caagcttgcttgtgaacttgtcattgaagaagaatgtgtcatcctctgatatgtccttgc 492 |||||||||||||||||||||| |||||| |||||||||||||||| ||||| || |||| Sbjct: 2012 caagcttgcttgtgaacttgtcgttgaagtagaatgtgtcatcctccgatatatctttgc 1953 Query: 493 tcatgggctctttacggagaacattcttccccttgacacaagcaagagactggagacatc 552 ||||||| || || ||||||||||||||||||||||||||||||||||| || || |||| Sbjct: 1952 tcatgggttccttgcggagaacattcttccccttgacacaagcaagagattgaaggcatc 1893 Query: 553 tctttaggtctgtggaaggtatctctgtagcttgctcgatgtctttgtaggtaagtccat 612 ||||||| || | || ||||||| | ||| |||| ||||||||||||||||| | |||| Sbjct: 1892 tctttagatccgaggcaggtatcgcagtatcttgttcgatgtctttgtaggttaacccat 1833 Query: 613 cagaagagttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgct 672 | | ||| ||||||| ||| |||||||||||||| |||||||||||||| || ||||||| Sbjct: 1832 cggtagaattaaacagcatgagaacacacatctgataagtggatacatttagttcatgct 1773 Query: 673 t 673 | Sbjct: 1772 t 1772
>gb|BT018336.1| Zea mays clone EL01T0402H09.c mRNA sequence Length = 1303 Score = 573 bits (289), Expect = e-160 Identities = 478/541 (88%) Strand = Plus / Minus Query: 138 tatgcaagatagcgatataattttctatctgctttgtccctctctaagaattcacgctcg 197 ||||||||||| |||||||||||||||||| ||||||| || || ||||| || || || Sbjct: 1015 tatgcaagataacgatataattttctatctactttgtctctttccaagaactctcgttca 956 Query: 198 atcagagattctatgcgtttctttatgataacagggtttggcaagaaccgtgcttgcaat 257 ||||||||||| |||||||||||||||| |||||| ||||||||||| || ||||||||| Sbjct: 955 atcagagattcaatgcgtttctttatgacaacaggatttggcaagaaacgggcttgcaat 896 Query: 258 tgcttggtgacctcggagacaatactgttatgatccaagaccctcctagatttcatgatc 317 |||||||||||||| | ||||| |||||||||||||| ||||||| |||||||||||| Sbjct: 895 tgcttggtgacctcagctacaatgctgttatgatccaacaccctccgtgatttcatgatc 836 Query: 318 ctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctggcgggtctcc 377 || || ||||| || || ||||||||||||||||||||||||||||| ||||| |||||| Sbjct: 835 ctgacaatggctgcttcgatctgaggtttcctgtcctcctcaacccgttggcgagtctcc 776 Query: 378 tgcttctctggctcagattcctttgccgccaccactgtcccgatcttcaccttaacaagc 437 || |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||| Sbjct: 775 tgtttctctggttcagattccttctgtgccaccactgtcccaatcttcactttaacaagc 716 Query: 438 ttgcttgtgaacttgtcattgaagaagaatgtgtcatcctctgatatgtccttgctcatg 497 |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| Sbjct: 715 ttgcttgtgaacttatcattgaagtagaatgtgtcatcctcagatatgtccttgctcata 656 Query: 498 ggctctttacggagaacattcttccccttgacacaagcaagagactggagacatctcttt 557 ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||||||||| Sbjct: 655 ggctccttacggagaacatttttccccttgacacaagcaagtgactgcagacatctcttt 596 Query: 558 aggtctgtggaaggtatctctgtagcttgctcgatgtctttgtaggtaagtccatcagaa 617 ||||||| || ||||||||| ||| | | || |||||||||||||| | |||||||| | Sbjct: 595 aggtctgaggcaggtatctcagtatcccgttcaatgtctttgtaggtcaatccatcagca 536 Query: 618 gagttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgcttttgg 677 |||||||| ||| |||||||||||||| |||||||||||||| || |||||||| ||| Sbjct: 535 ttgttaaacagcatgagaacacacatctgataagtggatacatttagttcatgcttctgg 476 Query: 678 c 678 | Sbjct: 475 c 475
>gb|AY111672.1| Zea mays CL37763_1 mRNA sequence Length = 887 Score = 371 bits (187), Expect = 2e-99 Identities = 336/388 (86%) Strand = Plus / Minus Query: 291 tccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctgaggtttcctg 350 ||||| ||||||| |||||||||||||| || ||||| || || ||||||||||||| | Sbjct: 584 tccaacaccctccgtgatttcatgatcctgacaatggctgcttcgatctgaggtttccgg 525 Query: 351 tcctcctcaacccgctggcgggtctcctgcttctctggctcagattcctttgccgccacc 410 |||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||| Sbjct: 524 tcctcctcaacccgttggcgagtctcctgtttctctggttcagattccttctgtgccacc 465 Query: 411 actgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaagaagaatgtg 470 |||||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||| Sbjct: 464 actgtcccaatcttcactttaacaagcttgcttgtgaacttatcattgaagtagaatgtg 405 Query: 471 tcatcctctgatatgtccttgctcatgggctctttacggagaacattcttccccttgaca 530 |||||||| |||||||||||| |||| ||||| |||||||||||| |||||||||| Sbjct: 404 tcatcctcagatatgtccttgntcataggctccttacggagaacannnnnccccttgaca 345 Query: 531 caagcaagagactggagacatctctttaggtctgtggaaggtatctctgtagcttgctcg 590 |||||||| ||||| ||||||||||||||||||| || ||||||||| ||| | | || Sbjct: 344 caagcaagtgactgcagacatctctttaggtctgaggcaggtatctcagtatcccgttca 285 Query: 591 atgtctttgtaggtaagtccatcagaagagttaaacaacatcagaacacacatctggtaa 650 |||||||||||||| | |||||||| | ||||| || ||| |||||||||||||| ||| Sbjct: 284 atgtctttgtaggtcaatccatcagcattgttaancagcatgagaacacacatctgataa 225 Query: 651 gtggatacattcagctcatgcttttggc 678 ||||||||||| || |||||||| |||| Sbjct: 224 gtggatacatttagttcatgcttctggc 197 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 198 atcagagattctatgcgtttctttat 223 ||||||||||| |||||||||||||| Sbjct: 677 atcagagattcaatgcgtttctttat 652
>ref|XM_474079.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2196 Score = 170 bits (86), Expect = 4e-39 Identities = 311/386 (80%) Strand = Plus / Minus Query: 162 ctatctgctttgtccctctctaagaattcacgctcgatcagagattctatgcgtttcttt 221 |||||| | ||||||||||| ||||| || | ||||||||| || ||||| | ||||||| Sbjct: 2171 ctatctaccttgtccctctccaagaactccctctcgatcagggactctattcttttcttt 2112 Query: 222 atgataacagggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaata 281 || | |||||| |||||||| || || | ||| | ||||| || ||||| | || || Sbjct: 2111 atcacaacaggatttggcaaaaagcgcgattgaagctgctttgtcacctccgtgattatg 2052 Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 || || || |||||||| || || || |||||||| || || || || |||||||| ||| Sbjct: 2051 ctattgtggtccaagactcttctggacttcatgattctgacaattgcagcctcaatttga 1992 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 ||||||||||| |||||||| | |||||| || ||| ||||||||| || | ||| || Sbjct: 1991 ggtttcctgtcttcctcaactctctggcgagtttccaacttctctggttctgtttctttc 1932 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 || ||||| || || ||||||||||| || | |||||||||||||||||||||| || Sbjct: 1931 tgagcaaccacggtgccaatcttcaccttgaccaacttgcttgtgaacttgtcattgtag 1872 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| |||||||| || ||||| |||||||||||||| || || || || |||||||| Sbjct: 1871 tagaaagtgtcatcttcagatatatccttgctcatgggttccttccgcagcacattctta 1812 Query: 522 cccttgacacaagcaagagactggag 547 ||||| |||||||||||||||||||| Sbjct: 1811 cccttaacacaagcaagagactggag 1786 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 621 ttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgc 671 ||||||| |||||| ||||||||||| || || || ||||||| ||||||| Sbjct: 1712 ttaaacagcatcaggacacacatctgatatgtcgagacattcaactcatgc 1662
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 170 bits (86), Expect = 4e-39 Identities = 311/386 (80%) Strand = Plus / Minus Query: 162 ctatctgctttgtccctctctaagaattcacgctcgatcagagattctatgcgtttcttt 221 |||||| | ||||||||||| ||||| || | ||||||||| || ||||| | ||||||| Sbjct: 123870 ctatctaccttgtccctctccaagaactccctctcgatcagggactctattcttttcttt 123811 Query: 222 atgataacagggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaata 281 || | |||||| |||||||| || || | ||| | ||||| || ||||| | || || Sbjct: 123810 atcacaacaggatttggcaaaaagcgcgattgaagctgctttgtcacctccgtgattatg 123751 Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 || || || |||||||| || || || |||||||| || || || || |||||||| ||| Sbjct: 123750 ctattgtggtccaagactcttctggacttcatgattctgacaattgcagcctcaatttga 123691 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 ||||||||||| |||||||| | |||||| || ||| ||||||||| || | ||| || Sbjct: 123690 ggtttcctgtcttcctcaactctctggcgagtttccaacttctctggttctgtttctttc 123631 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 || ||||| || || ||||||||||| || | |||||||||||||||||||||| || Sbjct: 123630 tgagcaaccacggtgccaatcttcaccttgaccaacttgcttgtgaacttgtcattgtag 123571 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| |||||||| || ||||| |||||||||||||| || || || || |||||||| Sbjct: 123570 tagaaagtgtcatcttcagatatatccttgctcatgggttccttccgcagcacattctta 123511 Query: 522 cccttgacacaagcaagagactggag 547 ||||| |||||||||||||||||||| Sbjct: 123510 cccttaacacaagcaagagactggag 123485 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 621 ttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgc 671 ||||||| |||||| ||||||||||| || || || ||||||| ||||||| Sbjct: 123411 ttaaacagcatcaggacacacatctgatatgtcgagacattcaactcatgc 123361
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 170 bits (86), Expect = 4e-39 Identities = 311/386 (80%) Strand = Plus / Minus Query: 162 ctatctgctttgtccctctctaagaattcacgctcgatcagagattctatgcgtttcttt 221 |||||| | ||||||||||| ||||| || | ||||||||| || ||||| | ||||||| Sbjct: 32764437 ctatctaccttgtccctctccaagaactccctctcgatcagggactctattcttttcttt 32764378 Query: 222 atgataacagggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaata 281 || | |||||| |||||||| || || | ||| | ||||| || ||||| | || || Sbjct: 32764377 atcacaacaggatttggcaaaaagcgcgattgaagctgctttgtcacctccgtgattatg 32764318 Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 || || || |||||||| || || || |||||||| || || || || |||||||| ||| Sbjct: 32764317 ctattgtggtccaagactcttctggacttcatgattctgacaattgcagcctcaatttga 32764258 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 ||||||||||| |||||||| | |||||| || ||| ||||||||| || | ||| || Sbjct: 32764257 ggtttcctgtcttcctcaactctctggcgagtttccaacttctctggttctgtttctttc 32764198 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 || ||||| || || ||||||||||| || | |||||||||||||||||||||| || Sbjct: 32764197 tgagcaaccacggtgccaatcttcaccttgaccaacttgcttgtgaacttgtcattgtag 32764138 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| |||||||| || ||||| |||||||||||||| || || || || |||||||| Sbjct: 32764137 tagaaagtgtcatcttcagatatatccttgctcatgggttccttccgcagcacattctta 32764078 Query: 522 cccttgacacaagcaagagactggag 547 ||||| |||||||||||||||||||| Sbjct: 32764077 cccttaacacaagcaagagactggag 32764052 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 621 ttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgc 671 ||||||| |||||| ||||||||||| || || || ||||||| ||||||| Sbjct: 32763978 ttaaacagcatcaggacacacatctgatatgtcgagacattcaactcatgc 32763928
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete sequence Length = 91539 Score = 170 bits (86), Expect = 4e-39 Identities = 311/386 (80%) Strand = Plus / Minus Query: 162 ctatctgctttgtccctctctaagaattcacgctcgatcagagattctatgcgtttcttt 221 |||||| | ||||||||||| ||||| || | ||||||||| || ||||| | ||||||| Sbjct: 34687 ctatctaccttgtccctctccaagaactccctctcgatcagggactctattcttttcttt 34628 Query: 222 atgataacagggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaata 281 || | |||||| |||||||| || || | ||| | ||||| || ||||| | || || Sbjct: 34627 atcacaacaggatttggcaaaaagcgcgattgaagctgctttgtcacctccgtgattatg 34568 Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 || || || |||||||| || || || |||||||| || || || || |||||||| ||| Sbjct: 34567 ctattgtggtccaagactcttctggacttcatgattctgacaattgcagcctcaatttga 34508 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 ||||||||||| |||||||| | |||||| || ||| ||||||||| || | ||| || Sbjct: 34507 ggtttcctgtcttcctcaactctctggcgagtttccaacttctctggttctgtttctttc 34448 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 || ||||| || || ||||||||||| || | |||||||||||||||||||||| || Sbjct: 34447 tgagcaaccacggtgccaatcttcaccttgaccaacttgcttgtgaacttgtcattgtag 34388 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| |||||||| || ||||| |||||||||||||| || || || || |||||||| Sbjct: 34387 tagaaagtgtcatcttcagatatatccttgctcatgggttccttccgcagcacattctta 34328 Query: 522 cccttgacacaagcaagagactggag 547 ||||| |||||||||||||||||||| Sbjct: 34327 cccttaacacaagcaagagactggag 34302 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 621 ttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgc 671 ||||||| |||||| ||||||||||| || || || ||||||| ||||||| Sbjct: 34228 ttaaacagcatcaggacacacatctgatatgtcgagacattcaactcatgc 34178
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 170 bits (86), Expect = 4e-39 Identities = 311/386 (80%) Strand = Plus / Minus Query: 162 ctatctgctttgtccctctctaagaattcacgctcgatcagagattctatgcgtttcttt 221 |||||| | ||||||||||| ||||| || | ||||||||| || ||||| | ||||||| Sbjct: 26727 ctatctaccttgtccctctccaagaactccctctcgatcagggactctattcttttcttt 26668 Query: 222 atgataacagggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaata 281 || | |||||| |||||||| || || | ||| | ||||| || ||||| | || || Sbjct: 26667 atcacaacaggatttggcaaaaagcgcgattgaagctgctttgtcacctccgtgattatg 26608 Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 || || || |||||||| || || || |||||||| || || || || |||||||| ||| Sbjct: 26607 ctattgtggtccaagactcttctggacttcatgattctgacaattgcagcctcaatttga 26548 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 ||||||||||| |||||||| | |||||| || ||| ||||||||| || | ||| || Sbjct: 26547 ggtttcctgtcttcctcaactctctggcgagtttccaacttctctggttctgtttctttc 26488 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 || ||||| || || ||||||||||| || | |||||||||||||||||||||| || Sbjct: 26487 tgagcaaccacggtgccaatcttcaccttgaccaacttgcttgtgaacttgtcattgtag 26428 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| |||||||| || ||||| |||||||||||||| || || || || |||||||| Sbjct: 26427 tagaaagtgtcatcttcagatatatccttgctcatgggttccttccgcagcacattctta 26368 Query: 522 cccttgacacaagcaagagactggag 547 ||||| |||||||||||||||||||| Sbjct: 26367 cccttaacacaagcaagagactggag 26342 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 621 ttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgc 671 ||||||| |||||| ||||||||||| || || || ||||||| ||||||| Sbjct: 26268 ttaaacagcatcaggacacacatctgatatgtcgagacattcaactcatgc 26218
>dbj|AK069061.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008J21, full insert sequence Length = 2584 Score = 163 bits (82), Expect = 9e-37 Identities = 310/386 (80%) Strand = Plus / Minus Query: 162 ctatctgctttgtccctctctaagaattcacgctcgatcagagattctatgcgtttcttt 221 |||||| | ||||||||||| ||||| || | ||||||||| || ||||| | ||||||| Sbjct: 2349 ctatctaccttgtccctctccaagaactccctctcgatcagggactctattcttttcttt 2290 Query: 222 atgataacagggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaata 281 || | |||||| |||||||| || || | ||| | ||||| || ||||| | || | Sbjct: 2289 atcacaacaggatttggcaaaaagcgcgattgaagctgctttgtcacctccgtgattacg 2230 Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 || || || |||||||| || || || |||||||| || || || || |||||||| ||| Sbjct: 2229 ctattgtggtccaagactcttctggacttcatgattctgacaattgcagcctcaatttga 2170 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 ||||||||||| |||||||| | |||||| || ||| ||||||||| || | ||| || Sbjct: 2169 ggtttcctgtcttcctcaactctctggcgagtttccaacttctctggttctgtttctttc 2110 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 || ||||| || || ||||||||||| || | |||||||||||||||||||||| || Sbjct: 2109 tgagcaaccacggtgccaatcttcaccttgaccaacttgcttgtgaacttgtcattgtag 2050 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| |||||||| || ||||| |||||||||||||| || || || || |||||||| Sbjct: 2049 tagaaagtgtcatcttcagatatatccttgctcatgggttccttccgcagcacattctta 1990 Query: 522 cccttgacacaagcaagagactggag 547 ||||| |||||||||||||||||||| Sbjct: 1989 cccttaacacaagcaagagactggag 1964 Score = 46.1 bits (23), Expect = 0.15 Identities = 44/51 (86%) Strand = Plus / Minus Query: 621 ttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgc 671 ||||||| |||||| ||||||||||| || || || ||||||| ||||||| Sbjct: 1890 ttaaacagcatcaggacacacatctgatatgtcgagacattcaactcatgc 1840
>ref|XM_480292.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2507 Score = 133 bits (67), Expect = 8e-28 Identities = 250/311 (80%) Strand = Plus / Minus Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 ||||| ||||||| || ||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 2264 ctgttgtgatccagcactctcctcgacttcatgatcctcacgatggccgcctcgatctga 2205 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 || |||||||||||||| || | ||| ||||||||| ||||||||||||||| ||||| Sbjct: 2204 ggcttcctgtcctcctcgactctctgccgggtctccatcttctctggctcagactccttc 2145 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 | | |||| || |||||||||||||| | |||||||| |||||||| || |||| | Sbjct: 2144 tgtgtcgccaccgtgccgatcttcaccttgaacagcttgctggtgaacttatcgttgacg 2085 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| ||||||| || || |||||| ||||||| || || || || ||||| ||||| Sbjct: 2084 tagaagttgtcatcgtcggagatgtccctgctcataggttccttgcgcagaacgttcttg 2025 Query: 522 cccttgacacaagcaagagactggagacatctctttaggtctgtggaaggtatctctgta 581 ||||| ||| || |||||||| || || | ||| ||||| | ||| |||||| ||||| Sbjct: 2024 cccttcacaagcgcgagagactgaaggcagcgcttcaggtccgcggatggtatcgctgta 1965 Query: 582 gcttgctcgat 592 | |||||||| Sbjct: 1964 gtctgctcgat 1954 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 618 gagttaaacaacatcagaacacacatctggta 649 ||||| |||||||| ||||||||||||||||| Sbjct: 1928 gagttgaacaacatgagaacacacatctggta 1897
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 133 bits (67), Expect = 8e-28 Identities = 250/311 (80%) Strand = Plus / Plus Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 ||||| ||||||| || ||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 4147315 ctgttgtgatccagcactctcctcgacttcatgatcctcacgatggccgcctcgatctga 4147374 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 || |||||||||||||| || | ||| ||||||||| ||||||||||||||| ||||| Sbjct: 4147375 ggcttcctgtcctcctcgactctctgccgggtctccatcttctctggctcagactccttc 4147434 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 | | |||| || |||||||||||||| | |||||||| |||||||| || |||| | Sbjct: 4147435 tgtgtcgccaccgtgccgatcttcaccttgaacagcttgctggtgaacttatcgttgacg 4147494 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| ||||||| || || |||||| ||||||| || || || || ||||| ||||| Sbjct: 4147495 tagaagttgtcatcgtcggagatgtccctgctcataggttccttgcgcagaacgttcttg 4147554 Query: 522 cccttgacacaagcaagagactggagacatctctttaggtctgtggaaggtatctctgta 581 ||||| ||| || |||||||| || || | ||| ||||| | ||| |||||| ||||| Sbjct: 4147555 cccttcacaagcgcgagagactgaaggcagcgcttcaggtccgcggatggtatcgctgta 4147614 Query: 582 gcttgctcgat 592 | |||||||| Sbjct: 4147615 gtctgctcgat 4147625 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 618 gagttaaacaacatcagaacacacatctggta 649 ||||| |||||||| ||||||||||||||||| Sbjct: 4147651 gagttgaacaacatgagaacacacatctggta 4147682
>dbj|AP005606.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1590_E05 Length = 148205 Score = 133 bits (67), Expect = 8e-28 Identities = 250/311 (80%) Strand = Plus / Plus Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 ||||| ||||||| || ||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 46938 ctgttgtgatccagcactctcctcgacttcatgatcctcacgatggccgcctcgatctga 46997 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 || |||||||||||||| || | ||| ||||||||| ||||||||||||||| ||||| Sbjct: 46998 ggcttcctgtcctcctcgactctctgccgggtctccatcttctctggctcagactccttc 47057 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 | | |||| || |||||||||||||| | |||||||| |||||||| || |||| | Sbjct: 47058 tgtgtcgccaccgtgccgatcttcaccttgaacagcttgctggtgaacttatcgttgacg 47117 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| ||||||| || || |||||| ||||||| || || || || ||||| ||||| Sbjct: 47118 tagaagttgtcatcgtcggagatgtccctgctcataggttccttgcgcagaacgttcttg 47177 Query: 522 cccttgacacaagcaagagactggagacatctctttaggtctgtggaaggtatctctgta 581 ||||| ||| || |||||||| || || | ||| ||||| | ||| |||||| ||||| Sbjct: 47178 cccttcacaagcgcgagagactgaaggcagcgcttcaggtccgcggatggtatcgctgta 47237 Query: 582 gcttgctcgat 592 | |||||||| Sbjct: 47238 gtctgctcgat 47248 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 618 gagttaaacaacatcagaacacacatctggta 649 ||||| |||||||| ||||||||||||||||| Sbjct: 47274 gagttgaacaacatgagaacacacatctggta 47305
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0458D06 Length = 166038 Score = 133 bits (67), Expect = 8e-28 Identities = 250/311 (80%) Strand = Plus / Plus Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 ||||| ||||||| || ||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 140428 ctgttgtgatccagcactctcctcgacttcatgatcctcacgatggccgcctcgatctga 140487 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 || |||||||||||||| || | ||| ||||||||| ||||||||||||||| ||||| Sbjct: 140488 ggcttcctgtcctcctcgactctctgccgggtctccatcttctctggctcagactccttc 140547 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 | | |||| || |||||||||||||| | |||||||| |||||||| || |||| | Sbjct: 140548 tgtgtcgccaccgtgccgatcttcaccttgaacagcttgctggtgaacttatcgttgacg 140607 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| ||||||| || || |||||| ||||||| || || || || ||||| ||||| Sbjct: 140608 tagaagttgtcatcgtcggagatgtccctgctcataggttccttgcgcagaacgttcttg 140667 Query: 522 cccttgacacaagcaagagactggagacatctctttaggtctgtggaaggtatctctgta 581 ||||| ||| || |||||||| || || | ||| ||||| | ||| |||||| ||||| Sbjct: 140668 cccttcacaagcgcgagagactgaaggcagcgcttcaggtccgcggatggtatcgctgta 140727 Query: 582 gcttgctcgat 592 | |||||||| Sbjct: 140728 gtctgctcgat 140738 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Plus Query: 618 gagttaaacaacatcagaacacacatctggta 649 ||||| |||||||| ||||||||||||||||| Sbjct: 140764 gagttgaacaacatgagaacacacatctggta 140795
>dbj|AK066234.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013058A05, full insert sequence Length = 2506 Score = 133 bits (67), Expect = 8e-28 Identities = 250/311 (80%) Strand = Plus / Minus Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 ||||| ||||||| || ||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 2263 ctgttgtgatccagcactctcctcgacttcatgatcctcacgatggccgcctcgatctga 2204 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 || |||||||||||||| || | ||| ||||||||| ||||||||||||||| ||||| Sbjct: 2203 ggcttcctgtcctcctcgactctctgccgggtctccatcttctctggctcagactccttc 2144 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 | | |||| || |||||||||||||| | |||||||| |||||||| || |||| | Sbjct: 2143 tgtgtcgccaccgtgccgatcttcaccttgaacagcttgctggtgaacttatcgttgacg 2084 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| ||||||| || || |||||| ||||||| || || || || ||||| ||||| Sbjct: 2083 tagaagttgtcatcgtcggagatgtccctgctcataggttccttgcgcagaacgttcttg 2024 Query: 522 cccttgacacaagcaagagactggagacatctctttaggtctgtggaaggtatctctgta 581 ||||| ||| || |||||||| || || | ||| ||||| | ||| |||||| ||||| Sbjct: 2023 cccttcacaagcgcgagagactgaaggcagcgcttcaggtccgcggatggtatcgctgta 1964 Query: 582 gcttgctcgat 592 | |||||||| Sbjct: 1963 gtctgctcgat 1953 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 618 gagttaaacaacatcagaacacacatctggta 649 ||||| |||||||| ||||||||||||||||| Sbjct: 1927 gagttgaacaacatgagaacacacatctggta 1896
>dbj|AK061805.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A02, full insert sequence Length = 1078 Score = 133 bits (67), Expect = 8e-28 Identities = 250/311 (80%) Strand = Plus / Minus Query: 282 ctgttatgatccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctga 341 ||||| ||||||| || ||||| || |||||||||||||||||||| ||||| |||||| Sbjct: 835 ctgttgtgatccagcactctcctcgacttcatgatcctcacgatggccgcctcgatctga 776 Query: 342 ggtttcctgtcctcctcaacccgctggcgggtctcctgcttctctggctcagattccttt 401 || |||||||||||||| || | ||| ||||||||| ||||||||||||||| ||||| Sbjct: 775 ggcttcctgtcctcctcgactctctgccgggtctccatcttctctggctcagactccttc 716 Query: 402 gccgccaccactgtcccgatcttcaccttaacaagcttgcttgtgaacttgtcattgaag 461 | | |||| || |||||||||||||| | |||||||| |||||||| || |||| | Sbjct: 715 tgtgtcgccaccgtgccgatcttcaccttgaacagcttgctggtgaacttatcgttgacg 656 Query: 462 aagaatgtgtcatcctctgatatgtccttgctcatgggctctttacggagaacattcttc 521 |||| ||||||| || || |||||| ||||||| || || || || ||||| ||||| Sbjct: 655 tagaagttgtcatcgtcggagatgtccctgctcataggttccttgcgcagaacgttcttg 596 Query: 522 cccttgacacaagcaagagactggagacatctctttaggtctgtggaaggtatctctgta 581 ||||| ||| || |||||||| || || | ||| ||||| | ||| |||||| ||||| Sbjct: 595 cccttcacaagcgcgagagactgaaggcagcgcttcaggtccgcggatggtatcgctgta 536 Query: 582 gcttgctcgat 592 | |||||||| Sbjct: 535 gtctgctcgat 525 Score = 48.1 bits (24), Expect = 0.038 Identities = 30/32 (93%) Strand = Plus / Minus Query: 618 gagttaaacaacatcagaacacacatctggta 649 ||||| |||||||| ||||||||||||||||| Sbjct: 499 gagttgaacaacatgagaacacacatctggta 468
>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence Length = 129921 Score = 101 bits (51), Expect = 3e-18 Identities = 90/103 (87%) Strand = Plus / Plus Query: 299 cctcctagatttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctc 358 |||||||||||||||||||||||| || || |||||||||||||| |||||||||||||| Sbjct: 71189 cctcctagatttcatgatcctcactattgccgcctcaatctgaggcttcctgtcctcctc 71248 Query: 359 aacccgctggcgggtctcctgcttctctggctcagattccttt 401 || ||||| || || ||||| ||||| || || ||||||||| Sbjct: 71249 cactcgctgccgagtttcctgtttctcaggttcggattccttt 71291
>gb|AC122544.1| Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence Length = 121637 Score = 77.8 bits (39), Expect = 4e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 162 ctatctgctttgtccctctctaagaattcacgctcgatcagagattctatgcgtttcttt 221 ||||||| ||| |||||||| |||||||||||||| |||| ||| || || ||||||||| Sbjct: 54992 ctatctgttttatccctctccaagaattcacgctcaatcaaagactcaattcgtttcttt 54933 Query: 222 atgataacagggtttggca 240 |||| ||| |||||||||| Sbjct: 54932 atgacaactgggtttggca 54914 Score = 58.0 bits (29), Expect = 4e-05 Identities = 131/165 (79%) Strand = Plus / Minus Query: 512 aacattcttccccttgacacaagcaagagactggagacatctctttaggtctgtggaagg 571 |||||||||||||||||||||||| ||||| || | || ||||||| ||||| | || Sbjct: 54642 aacattcttccccttgacacaagcgagagattgtaagcacctctttaagtctgaagctgg 54583 Query: 572 tatctctgtagcttgctcgatgtctttgtaggtaagtccatcagaagagttaaacaacat 631 ||| |||||||| || || || |||||||| | | || ||| || ||| |||||||| Sbjct: 54582 tatttctgtagcctgttcaatttctttgtaactcattcgatccgatttgttgaacaacat 54523 Query: 632 cagaacacacatctggtaagtggatacattcagctcatgcttttg 676 || | |||||||| |||||||| ||||| ||||| |||||||| Sbjct: 54522 aaggatgcacatctgataagtggaaacattaagctcgtgcttttg 54478
>ref|NM_102447.3| Arabidopsis thaliana ATCUL3/ATCUL3A/CUL3/CUL3A; protein binding / ubiquitin-protein ligase AT1G26830 (ATCUL3/ATCUL3A/CUL3/CUL3A) mRNA, complete cds Length = 2526 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 576 tctgtagcttgctcgatgtctttgtaggtaagtccatcagaagagttaaacaacatcaga 635 |||||||| || ||||| ||||||||| | |||| ||||||| ||| |||||||| ||| Sbjct: 1923 tctgtagcctgttcgatctctttgtagctgagtcgatcagaattgttgaacaacatgaga 1864 Query: 636 acacacatctggtaagtggatacattcagctcatg 670 |||||||||||| |||| || || ||||| ||||| Sbjct: 1863 acacacatctggaaagtcgacacgttcagttcatg 1829 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctgg 368 ||||||||||| |||||||| || |||||||||||||| ||||| ||||| || | ||| Sbjct: 2190 ttcatgatccttacgatggctgcttcaatctgaggttttctgtcttcctccactctctgt 2131 Query: 369 cgggtctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcacc 428 | ||||| |||||||| || || | ||||||| || ||||| || ||||||||||| Sbjct: 2130 ctcgtctcttgcttctccggttctgtttccttttgggcaaccacagttccgatcttcact 2071 Query: 429 ttaacaagcttgcttgtgaacttgtc 454 || || |||||| ||||||||||| Sbjct: 2070 ttgtaaaacttgctagtgaacttgtc 2045
>emb|AJ344252.1|ATH344252 Arabidopsis thaliana mRNA for cullin 3a (cul3a gene) Length = 2544 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 576 tctgtagcttgctcgatgtctttgtaggtaagtccatcagaagagttaaacaacatcaga 635 |||||||| || ||||| ||||||||| | |||| ||||||| ||| |||||||| ||| Sbjct: 1923 tctgtagcctgttcgatctctttgtagctgagtcgatcagaattgttgaacaacatgaga 1864 Query: 636 acacacatctggtaagtggatacattcagctcatg 670 |||||||||||| |||| || || ||||| ||||| Sbjct: 1863 acacacatctggaaagtcgacacgttcagttcatg 1829 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctgg 368 ||||||||||| |||||||| || |||||||||||||| ||||| ||||| || | ||| Sbjct: 2190 ttcatgatccttacgatggctgcttcaatctgaggttttctgtcttcctccactctctgt 2131 Query: 369 cgggtctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcacc 428 | ||||| |||||||| || || | ||||||| || ||||| || ||||||||||| Sbjct: 2130 ctcgtctcttgcttctccggttctgtttccttttgggcaaccacagttccgatcttcact 2071 Query: 429 ttaacaagcttgcttgtgaacttgtc 454 || || |||||| ||||||||||| Sbjct: 2070 ttgtaaaacttgctagtgaacttgtc 2045
>emb|AJ319540.1|ATH319540 Arabidopsis thaliana partial mRNA for cullin 3a (cul3a gene) Length = 1204 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 576 tctgtagcttgctcgatgtctttgtaggtaagtccatcagaagagttaaacaacatcaga 635 |||||||| || ||||| ||||||||| | |||| ||||||| ||| |||||||| ||| Sbjct: 579 tctgtagcctgttcgatctctttgtagctgagtcgatcagaattgttgaacaacatgaga 520 Query: 636 acacacatctggtaagtggatacattcagctcatg 670 |||||||||||| |||| || || ||||| ||||| Sbjct: 519 acacacatctggaaagtcgacacgttcagttcatg 485 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctgg 368 ||||||||||| |||||||| || |||||||||||||| ||||| ||||| || | ||| Sbjct: 846 ttcatgatccttacgatggctgcttcaatctgaggttttctgtcttcctccactctctgt 787 Query: 369 cgggtctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcacc 428 | ||||| |||||||| || || | ||||||| || ||||| || ||||||||||| Sbjct: 786 ctcgtctcttgcttctccggttctgtttccttttgggcaaccacagttccgatcttcact 727 Query: 429 ttaacaagcttgcttgtgaacttgtc 454 || || |||||| ||||||||||| Sbjct: 726 ttgtaaaacttgctagtgaacttgtc 701
>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence Length = 98630 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 576 tctgtagcttgctcgatgtctttgtaggtaagtccatcagaagagttaaacaacatcaga 635 |||||||| || ||||| ||||||||| | |||| ||||||| ||| |||||||| ||| Sbjct: 97693 tctgtagcctgttcgatctctttgtagctgagtcgatcagaattgttgaacaacatgaga 97634 Query: 636 acacacatctggtaagtggatacattcagctcatg 670 |||||||||||| |||| || || ||||| ||||| Sbjct: 97633 acacacatctggaaagtcgacacgttcagttcatg 97599 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctgg 368 ||||||||||| |||||||| || |||||||||||||| ||||| ||||| || | ||| Sbjct: 97960 ttcatgatccttacgatggctgcttcaatctgaggttttctgtcttcctccactctctgt 97901 Query: 369 cgggtctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcacc 428 | ||||| |||||||| || || | ||||||| || ||||| || ||||||||||| Sbjct: 97900 ctcgtctcttgcttctccggttctgtttccttttgggcaaccacagttccgatcttcact 97841 Query: 429 ttaacaagcttgcttgtgaacttgtc 454 || || |||||| ||||||||||| Sbjct: 97840 ttgtaaaacttgctagtgaacttgtc 97815
>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete sequence Length = 85372 Score = 69.9 bits (35), Expect = 1e-08 Identities = 80/95 (84%) Strand = Plus / Minus Query: 576 tctgtagcttgctcgatgtctttgtaggtaagtccatcagaagagttaaacaacatcaga 635 |||||||| || ||||| ||||||||| | |||| ||||||| ||| |||||||| ||| Sbjct: 5848 tctgtagcctgttcgatctctttgtagctgagtcgatcagaattgttgaacaacatgaga 5789 Query: 636 acacacatctggtaagtggatacattcagctcatg 670 |||||||||||| |||| || || ||||| ||||| Sbjct: 5788 acacacatctggaaagtcgacacgttcagttcatg 5754 Score = 67.9 bits (34), Expect = 4e-08 Identities = 118/146 (80%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaacccgctgg 368 ||||||||||| |||||||| || |||||||||||||| ||||| ||||| || | ||| Sbjct: 6115 ttcatgatccttacgatggctgcttcaatctgaggttttctgtcttcctccactctctgt 6056 Query: 369 cgggtctcctgcttctctggctcagattcctttgccgccaccactgtcccgatcttcacc 428 | ||||| |||||||| || || | ||||||| || ||||| || ||||||||||| Sbjct: 6055 ctcgtctcttgcttctccggttctgtttccttttgggcaaccacagttccgatcttcact 5996 Query: 429 ttaacaagcttgcttgtgaacttgtc 454 || || |||||| ||||||||||| Sbjct: 5995 ttgtaaaacttgctagtgaacttgtc 5970
>ref|NM_105635.3| Arabidopsis thaliana ATCUL3B/CUL3B; protein binding / ubiquitin-protein ligase AT1G69670 (ATCUL3B/CUL3B) mRNA, complete cds Length = 1946 Score = 60.0 bits (30), Expect = 1e-05 Identities = 99/122 (81%) Strand = Plus / Minus Query: 231 gggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaatactgttatga 290 ||||||| ||||||||| | ||||| || ||||||||||| | || || |||| ||| Sbjct: 1714 gggtttgccaagaaccgcgtctgcaactgtttggtgacctctgcgattatgttgttgtga 1655 Query: 291 tccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctgaggtttcctg 350 ||||| || | ||||| ||||| |||||||||||||| || || ||||||||||| ||| Sbjct: 1654 tccaacactcgtctagacttcattatcctcacgatggctgcttcgatctgaggttttctg 1595 Query: 351 tc 352 || Sbjct: 1594 tc 1593
>gb|AC013289.11|AC013289 Arabidopsis thaliana chromosome 1 BAC T6C23 genomic sequence, complete sequence Length = 87148 Score = 60.0 bits (30), Expect = 1e-05 Identities = 99/122 (81%) Strand = Plus / Minus Query: 231 gggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaatactgttatga 290 ||||||| ||||||||| | ||||| || ||||||||||| | || || |||| ||| Sbjct: 68639 gggtttgccaagaaccgcgtctgcaactgtttggtgacctctgcgattatgttgttgtga 68580 Query: 291 tccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctgaggtttcctg 350 ||||| || | ||||| ||||| |||||||||||||| || || ||||||||||| ||| Sbjct: 68579 tccaacactcgtctagacttcattatcctcacgatggctgcttcgatctgaggttttctg 68520 Query: 351 tc 352 || Sbjct: 68519 tc 68518
>emb|AJ344541.1|ATH344541 Arabidopsis thaliana partial mRNA for cullin 3B (cul3B gene) Length = 1971 Score = 60.0 bits (30), Expect = 1e-05 Identities = 99/122 (81%) Strand = Plus / Minus Query: 231 gggtttggcaagaaccgtgcttgcaattgcttggtgacctcggagacaatactgttatga 290 ||||||| ||||||||| | ||||| || ||||||||||| | || || |||| ||| Sbjct: 1714 gggtttgccaagaaccgcgtctgcaactgtttggtgacctctgcgattatgttgttgtga 1655 Query: 291 tccaagaccctcctagatttcatgatcctcacgatggcggcctcaatctgaggtttcctg 350 ||||| || | ||||| ||||| |||||||||||||| || || ||||||||||| ||| Sbjct: 1654 tccaacactcgtctagacttcattatcctcacgatggctgcttcgatctgaggttttctg 1595 Query: 351 tc 352 || Sbjct: 1594 tc 1593
>gb|AY111946.1| Zea mays CL296_1 mRNA sequence Length = 1397 Score = 60.0 bits (30), Expect = 1e-05 Identities = 72/86 (83%) Strand = Plus / Minus Query: 420 atcttcaccttaacaagcttgcttgtgaacttgtcattgaagaagaatgtgtcatcctct 479 ||||||||||| | ||||||||| ||||||||||| || | | |||| ||||||| || Sbjct: 828 atcttcaccttgaaaagcttgctggtgaacttgtcgttcacgcagaagctgtcatcatcg 769 Query: 480 gatatgtccttgctcatgggctcttt 505 | || |||||||||||||||||||| Sbjct: 768 gcaatatccttgctcatgggctcttt 743 Score = 50.1 bits (25), Expect = 0.010 Identities = 46/53 (86%) Strand = Plus / Minus Query: 621 ttaaacaacatcagaacacacatctggtaagtggatacattcagctcatgctt 673 ||||||| ||| ||||||||||||||||| || || || ||||| |||||||| Sbjct: 627 ttaaacagcatgagaacacacatctggtatgttgagacgttcagttcatgctt 575
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 104/128 (81%), Gaps = 4/128 (3%) Strand = Plus / Minus Query: 420 atcttcaccttaacaagcttgcttgtgaacttgtcattgaagaagaatgtgtcatcctct 479 ||||| ||||| || | |||||||||| ||||||||||| || | |||||||| || Sbjct: 41344218 atctttaccttgaccaacttgcttgtggacttgtcattgtagtaa---gtgtcatcttca 41344162 Query: 480 gatatgtccttgctcatgggctctttacggagaacattcttccccttgacacaagcaaga 539 ||||| || ||||||||||| || || || | |||||||| | ||| |||||||||||| Sbjct: 41344161 gatatatc-ttgctcatgggttccttccgcaacacattcttactcttaacacaagcaaga 41344103 Query: 540 gactggag 547 |||||||| Sbjct: 41344102 gactggag 41344095
>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0432C03 Length = 164394 Score = 52.0 bits (26), Expect = 0.002 Identities = 104/128 (81%), Gaps = 4/128 (3%) Strand = Plus / Minus Query: 420 atcttcaccttaacaagcttgcttgtgaacttgtcattgaagaagaatgtgtcatcctct 479 ||||| ||||| || | |||||||||| ||||||||||| || | |||||||| || Sbjct: 35711 atctttaccttgaccaacttgcttgtggacttgtcattgtagtaa---gtgtcatcttca 35655 Query: 480 gatatgtccttgctcatgggctctttacggagaacattcttccccttgacacaagcaaga 539 ||||| || ||||||||||| || || || | |||||||| | ||| |||||||||||| Sbjct: 35654 gatatatc-ttgctcatgggttccttccgcaacacattcttactcttaacacaagcaaga 35596 Query: 540 gactggag 547 |||||||| Sbjct: 35595 gactggag 35588
>ref|NM_189710.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1350 Score = 50.1 bits (25), Expect = 0.010 Identities = 91/111 (81%), Gaps = 4/111 (3%) Strand = Plus / Minus Query: 437 cttgcttgtgaacttgtcattgaagaagaatgtgtcatcctctgatatgtccttgctcat 496 |||||||||| ||||||||||| || | |||||||| || ||||| || |||||||| Sbjct: 287 cttgcttgtggacttgtcattgtagtaa---gtgtcatcttcagatatatc-ttgctcat 232 Query: 497 gggctctttacggagaacattcttccccttgacacaagcaagagactggag 547 ||| || || || | |||||||| | ||| |||||||||||||||||||| Sbjct: 231 gggttccttccgcaacacattcttactcttaacacaagcaagagactggag 181
>ref|NM_199659.2| Danio rerio cullin 1a (cul1a), mRNA Length = 3385 Score = 48.1 bits (24), Expect = 0.038 Identities = 45/52 (86%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaa 360 |||||||| ||||| ||||| |||| |||| | |||||||||||||||||| Sbjct: 2497 ttcatgattctcactatggccgcctgaatcaggagtttcctgtcctcctcaa 2446
>ref|XM_687739.1| PREDICTED: Danio rerio similar to Cullin 1 (LOC573365), mRNA Length = 744 Score = 48.1 bits (24), Expect = 0.038 Identities = 45/52 (86%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaa 360 |||||||| ||||| ||||| |||| |||| | |||||||||||||||||| Sbjct: 572 ttcatgattctcactatggccgcctgaatcaggagtttcctgtcctcctcaa 521
>ref|XM_686444.1| PREDICTED: Danio rerio similar to Cullin 1 (LOC573256), partial mRNA Length = 1844 Score = 48.1 bits (24), Expect = 0.038 Identities = 45/52 (86%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaa 360 |||||||| ||||| ||||| |||| |||| | |||||||||||||||||| Sbjct: 1076 ttcatgattctcactatggccgcctgaatcaggagtttcctgtcctcctcaa 1025
>gb|BC066480.1| Danio rerio cullin 1a, mRNA (cDNA clone MGC:77500 IMAGE:6524889), complete cds Length = 3385 Score = 48.1 bits (24), Expect = 0.038 Identities = 45/52 (86%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaa 360 |||||||| ||||| ||||| |||| |||| | |||||||||||||||||| Sbjct: 2497 ttcatgattctcactatggccgcctgaatcaggagtttcctgtcctcctcaa 2446
>gb|AC110219.11| Mus musculus chromosome 1, clone RP24-541P18, complete sequence Length = 193614 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 38 aacaaaataaaactgaactcaa 59 |||||||||||||||||||||| Sbjct: 150472 aacaaaataaaactgaactcaa 150493
>ref|XM_851039.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript variant 5 (LOC475512), mRNA Length = 2716 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatc 338 |||||||||||||||||||| |||| |||| Sbjct: 2111 ttcatgatcctcacgatggccgcctgaatc 2082
>ref|XM_532734.2| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript variant 1 (LOC475512), mRNA Length = 2713 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatc 338 |||||||||||||||||||| |||| |||| Sbjct: 2108 ttcatgatcctcacgatggccgcctgaatc 2079
>ref|XM_850961.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript variant 4 (LOC475512), mRNA Length = 2726 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatc 338 |||||||||||||||||||| |||| |||| Sbjct: 2308 ttcatgatcctcacgatggccgcctgaatc 2279
>ref|XM_843309.1| PREDICTED: Canis familiaris similar to Cullin-1 (CUL-1), transcript variant 3 (LOC475512), mRNA Length = 2922 Score = 44.1 bits (22), Expect = 0.60 Identities = 28/30 (93%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatc 338 |||||||||||||||||||| |||| |||| Sbjct: 2317 ttcatgatcctcacgatggccgcctgaatc 2288
>emb|BX067147.1|CNS09NZ3 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC50CH01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 972 Score = 44.1 bits (22), Expect = 0.60 Identities = 34/38 (89%) Strand = Plus / Minus Query: 620 gttaaacaacatcagaacacacatctggtaagtggata 657 |||||||| |||||| ||||||||||| ||||| |||| Sbjct: 473 gttaaacagcatcagtacacacatctgataagtcgata 436
>gb|AC122325.4| Mus musculus BAC clone RP23-334H17 from chromosome 5, complete sequence Length = 184869 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 catctctttaggtctgtggaa 569 ||||||||||||||||||||| Sbjct: 36931 catctctttaggtctgtggaa 36911
>emb|AL596264.13| Mouse DNA sequence from clone RP23-232G8 on chromosome 11 Contains a novel gene, complete sequence Length = 175724 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 ccccttgacacaagcaagaga 541 ||||||||||||||||||||| Sbjct: 26023 ccccttgacacaagcaagaga 26043
>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence Length = 159149 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 gtgaacttgtcattgaagaag 464 ||||||||||||||||||||| Sbjct: 10677 gtgaacttgtcattgaagaag 10697
>gb|AC116364.2| Homo sapiens chromosome 5 clone RP11-767I1, complete sequence Length = 188887 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 367 ggcgggtctcctgcttctctg 387 ||||||||||||||||||||| Sbjct: 35529 ggcgggtctcctgcttctctg 35549
>gb|AC092331.2| Homo sapiens chromosome 5 clone RP11-163B12, complete sequence Length = 162153 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 367 ggcgggtctcctgcttctctg 387 ||||||||||||||||||||| Sbjct: 161434 ggcgggtctcctgcttctctg 161414
>emb|AL772296.6| Mouse DNA sequence from clone RP23-66O9 on chromosome 4, complete sequence Length = 191662 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 tgctcatgaaatatcttagca 120 ||||||||||||||||||||| Sbjct: 187744 tgctcatgaaatatcttagca 187764
>emb|AL359396.5|CNS05TEU Human chromosome 14 DNA sequence BAC R-314P15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 163795 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 561 tctgtggaaggtatctctgtagctt 585 |||||||||||| |||||||||||| Sbjct: 35875 tctgtggaaggtctctctgtagctt 35851
>gb|AC121834.4| Mus musculus BAC clone RP24-72F20 from chromosome 5, complete sequence Length = 226382 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 catctctttaggtctgtggaa 569 ||||||||||||||||||||| Sbjct: 164322 catctctttaggtctgtggaa 164302
>gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, complete sequence Length = 171048 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tcttagcattcacatggtgg 132 |||||||||||||||||||| Sbjct: 66600 tcttagcattcacatggtgg 66581
>gb|AC091474.2| Mus musculus chromosome X clone RP21-643D22 complete sequence Length = 198426 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 tttctatctgctttgtccctctct 182 |||||||||| ||||||||||||| Sbjct: 163484 tttctatctgttttgtccctctct 163461
>ref|XM_870269.1| PREDICTED: Bos taurus similar to cullin 4A isoform 1 (LOC617935), mRNA Length = 4072 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctg 340 ||||||||||| ||||||||||| || ||||| Sbjct: 2012 ttcatgatcctgacgatggcggcatcgatctg 1981
>gb|BC052919.1| Danio rerio lethal giant larvae homolog 2 (Drosophila), mRNA (cDNA clone MGC:55895 IMAGE:3818830), complete cds Length = 4287 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gtctcctgcttctctggctc 391 |||||||||||||||||||| Sbjct: 1052 gtctcctgcttctctggctc 1033
>ref|XM_844090.1| PREDICTED: Canis familiaris similar to yeast INO80-like protein, transcript variant 3 (LOC478262), mRNA Length = 6386 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 543 tggagacatctctttaggtctgtg 566 |||||||||||||||||| ||||| Sbjct: 5410 tggagacatctctttagggctgtg 5433
>gb|AC125059.4| Mus musculus BAC clone RP23-404P13 from chromosome 19, complete sequence Length = 189613 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 531 caagcaagagactggagaca 550 |||||||||||||||||||| Sbjct: 60460 caagcaagagactggagaca 60441
>gb|AC136138.30| Medicago truncatula clone mth2-8f9, complete sequence Length = 128267 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 gcttgtgaacttgtcattgaagaa 463 |||||||||||| ||||||||||| Sbjct: 99140 gcttgtgaacttttcattgaagaa 99117 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 440 gcttgtgaacttgtcattgaagaa 463 |||||||||||| ||||||||||| Sbjct: 82608 gcttgtgaacttttcattgaagaa 82585
>emb|CR407583.5| Zebrafish DNA sequence from clone DKEY-151C12 in linkage group 7, complete sequence Length = 104674 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ccaacaaaataaaactgaac 55 |||||||||||||||||||| Sbjct: 69079 ccaacaaaataaaactgaac 69098
>emb|AL136370.4| Human DNA sequence from clone RP11-101E13 on chromosome 1q31.2-31.3 Contains a zinc finger protein 101 (ZNF101) pseudogene, the UCHL5 gene for ubiquitin carboxyl-terminal hydrolase L5, the SSA2 gene for Sjogren syndrome antigen A2 (60kDa, ribonucleoprotein autoantigen SS-A/Ro), the GLRX2 gene for glutaredoxin 2 and two CpG islands, complete sequence Length = 147978 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 tctctggctcagattccttt 401 |||||||||||||||||||| Sbjct: 135116 tctctggctcagattccttt 135135
>emb|BX663528.10| Zebrafish DNA sequence from clone DKEYP-47F9 in linkage group 17, complete sequence Length = 193986 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 aatgtgtcatcctctgatat 484 |||||||||||||||||||| Sbjct: 125471 aatgtgtcatcctctgatat 125490
>ref|XM_682755.1| PREDICTED: Danio rerio similar to Lethal giant larvae homolog 2 (LOC559415), mRNA Length = 4062 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gtctcctgcttctctggctc 391 |||||||||||||||||||| Sbjct: 873 gtctcctgcttctctggctc 854
>ref|XM_697450.1| PREDICTED: Danio rerio hypothetical protein LOC554524 (LOC554524), mRNA Length = 4247 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gtctcctgcttctctggctc 391 |||||||||||||||||||| Sbjct: 1052 gtctcctgcttctctggctc 1033
>gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, complete sequence Length = 146978 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 tcttagcattcacatggtgg 132 |||||||||||||||||||| Sbjct: 53022 tcttagcattcacatggtgg 53003
>gb|AC157375.2| Medicago truncatula chromosome 2 BAC clone mth2-55b12, complete sequence Length = 125311 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 460 agaagaatgtgtcatcctctgata 483 ||||||| |||||||||||||||| Sbjct: 30074 agaagaaggtgtcatcctctgata 30051
>emb|BX000488.8| Zebrafish DNA sequence from clone CH211-286F18 in linkage group 14, complete sequence Length = 97160 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ccaacaaaataaaactgaac 55 |||||||||||||||||||| Sbjct: 12359 ccaacaaaataaaactgaac 12378
>emb|AL929467.6| Zebrafish DNA sequence from clone CH211-148E17, complete sequence Length = 156801 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gtctcctgcttctctggctc 391 |||||||||||||||||||| Sbjct: 147461 gtctcctgcttctctggctc 147480
>gb|BC045445.1| Danio rerio cullin 1a, mRNA (cDNA clone MGC:55747 IMAGE:3816432), complete cds Length = 2799 Score = 40.1 bits (20), Expect = 9.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 309 ttcatgatcctcacgatggcggcctcaatctgaggtttcctgtcctcctcaa 360 |||||| | ||||| ||||| |||| |||| | |||||||||||||||||| Sbjct: 2481 ttcatggttctcactatggccgcctgaatcaggagtttcctgtcctcctcaa 2430
>ref|NM_212582.1| Danio rerio lethal giant larvae homolog 2 (Drosophila) (llgl2), mRNA Length = 4287 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 gtctcctgcttctctggctc 391 |||||||||||||||||||| Sbjct: 1052 gtctcctgcttctctggctc 1033
>emb|AL669976.11| Mouse DNA sequence from clone RP23-15J3 on chromosome X, complete sequence Length = 227762 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 tttctatctgctttgtccctctct 182 |||||||||| ||||||||||||| Sbjct: 41631 tttctatctgttttgtccctctct 41608 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,701,856 Number of Sequences: 3902068 Number of extensions: 6701856 Number of successful extensions: 138181 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 70 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137899 Number of HSP's gapped (non-prelim): 276 length of query: 684 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 661 effective length of database: 17,143,297,704 effective search space: 11331719782344 effective search space used: 11331719782344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
