| Clone Name | rbags14m07 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100 | 107 | 2e-23 | 2 | SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF | 46 | 1e-04 | 3 | YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II | 43 | 0.001 | 4 | TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichloroph... | 32 | 2.2 | 5 | DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13) | 30 | 8.5 |
|---|
>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100| Length = 1038 Score = 107 bits (268), Expect = 2e-23 Identities = 52/101 (51%), Positives = 72/101 (71%) Frame = -3 Query: 662 GRMLQPELMNDILGVSLSNFPDLSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVV 483 GRML P++ ++LGV + DLS++ +E +N S+ M + + LRE D S + + +V Sbjct: 940 GRMLSPDIAKNLLGVDFA--ADLSRVTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLV 997 Query: 482 RQGEQPREGFLLLSNLVEDQMAGTSSYMDWILQIHRQTQSS 360 RQGEQPREGFLLL NL+EDQM G+S Y+DWILQ+HRQ Q + Sbjct: 998 RQGEQPREGFLLLRNLIEDQMGGSSGYVDWILQLHRQVQQN 1038
>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF| Length = 1097 Score = 45.8 bits (107), Expect = 1e-04 Identities = 29/101 (28%), Positives = 58/101 (57%), Gaps = 1/101 (0%) Frame = -3 Query: 665 LGRMLQPELMNDILGV-SLSNFPDLSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPR 489 +G + +++ + V S + P S+ L++ DN S+ F V +R + SS ++ + Sbjct: 997 IGESVNSDILQKLFNVRSAAELP--SQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLRI-K 1053 Query: 488 VVRQGEQPREGFLLLSNLVEDQMAGTSSYMDWILQIHRQTQ 366 + ++G+ P L S +VED+ +G +SY+D+++ +HRQ Q Sbjct: 1054 LCKKGD-PAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQ 1093
>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II| Length = 891 Score = 42.7 bits (99), Expect = 0.001 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = -3 Query: 647 PELMNDILGV-SLSNFPDLSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVVRQGE 471 P L+ D+LGV SL + L ++L D S + +LR + S P++VRQG Sbjct: 793 PLLLQDLLGVESLEDIDSLKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGL 852 Query: 470 QPREGFLLLSNLVEDQMAGTSSYMDWILQIH 378 EG + S LVED Y+D++ +IH Sbjct: 853 DGSEGEIF-STLVEDNTREGFGYLDFLTKIH 882
>TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate| dioxygenase (EC 1.14.11.-) (2,4-D dioxygenase) Length = 297 Score = 31.6 bits (70), Expect = 2.2 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = -3 Query: 308 ADSAAVQVPGRPGRPLNHWNKMASQPCSTYAILLAATLLPSAGNTNF 168 A++ A +V G L H + QP + Y++L A L PS G+T F Sbjct: 97 AEADAREVVGNFANQLWHSDSSFQQPAARYSMLSAIVLPPSGGDTEF 143
>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)| Length = 302 Score = 29.6 bits (65), Expect = 8.5 Identities = 28/91 (30%), Positives = 31/91 (34%) Frame = +2 Query: 257 G*EGDQGDRGLAQQPNLQRFTQKQKFLEHPRYIITSSVFGGESGVSNPCNCWFQPSGPRR 436 G GDQGD+G A QP S GE G P +P P Sbjct: 160 GLPGDQGDKGEAGQPGQP----------------GSDAAPGEQGPKGPNGAPGKPGAPGA 203 Query: 437 GWTEARSPLLAAHLAVQHGAAGNTKNPSPSG 529 E L A VQ G G+T P P G Sbjct: 204 PGDEG---LPAVCEPVQKGEPGSTGEPGPVG 231 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 102,483,514 Number of Sequences: 219361 Number of extensions: 2248754 Number of successful extensions: 6228 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 5934 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6225 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6427774254 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)