ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14m07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100 107 2e-23
2SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF 46 1e-04
3YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II 43 0.001
4TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichloroph... 32 2.2
5DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13) 30 8.5

>SC24A_ARATH (Q9SFU0) Protein transport protein Sec24-like At3g07100|
          Length = 1038

 Score =  107 bits (268), Expect = 2e-23
 Identities = 52/101 (51%), Positives = 72/101 (71%)
 Frame = -3

Query: 662  GRMLQPELMNDILGVSLSNFPDLSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVV 483
            GRML P++  ++LGV  +   DLS++  +E +N  S+  M + + LRE D S + +  +V
Sbjct: 940  GRMLSPDIAKNLLGVDFA--ADLSRVTFQEQENGMSKKLMRLVKKLRESDPSYHPMCFLV 997

Query: 482  RQGEQPREGFLLLSNLVEDQMAGTSSYMDWILQIHRQTQSS 360
            RQGEQPREGFLLL NL+EDQM G+S Y+DWILQ+HRQ Q +
Sbjct: 998  RQGEQPREGFLLLRNLIEDQMGGSSGYVDWILQLHRQVQQN 1038



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>SC24C_ARATH (Q9M291) Protein transport protein Sec24-like CEF|
          Length = 1097

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 29/101 (28%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
 Frame = -3

Query: 665  LGRMLQPELMNDILGV-SLSNFPDLSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPR 489
            +G  +  +++  +  V S +  P  S+  L++ DN  S+ F  V   +R + SS  ++ +
Sbjct: 997  IGESVNSDILQKLFNVRSAAELP--SQYVLQKYDNQLSKKFNDVVNEIRRQRSSYLRI-K 1053

Query: 488  VVRQGEQPREGFLLLSNLVEDQMAGTSSYMDWILQIHRQTQ 366
            + ++G+ P    L  S +VED+ +G +SY+D+++ +HRQ Q
Sbjct: 1054 LCKKGD-PAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQ 1093



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>YNB3_SCHPO (Q9USS7) Hypothetical protein C4.03c in chromosome II|
          Length = 891

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = -3

Query: 647  PELMNDILGV-SLSNFPDLSKIQLRECDNNHSRNFMAVQRALRERDSSCYQLPRVVRQGE 471
            P L+ D+LGV SL +   L  ++L   D   S     +  +LR +  S    P++VRQG 
Sbjct: 793  PLLLQDLLGVESLEDIDSLKALELPTLDTVLSVQVRNLLSSLRMQFPSMALHPQIVRQGL 852

Query: 470  QPREGFLLLSNLVEDQMAGTSSYMDWILQIH 378
               EG +  S LVED       Y+D++ +IH
Sbjct: 853  DGSEGEIF-STLVEDNTREGFGYLDFLTKIH 882



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>TFDA_BURSR (Q45423) Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate|
           dioxygenase (EC 1.14.11.-) (2,4-D dioxygenase)
          Length = 297

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 308 ADSAAVQVPGRPGRPLNHWNKMASQPCSTYAILLAATLLPSAGNTNF 168
           A++ A +V G     L H +    QP + Y++L A  L PS G+T F
Sbjct: 97  AEADAREVVGNFANQLWHSDSSFQQPAARYSMLSAIVLPPSGGDTEF 143



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>DPY13_CAEEL (P17657) Cuticle collagen dpy-13 (Protein dumpy-13)|
          Length = 302

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 28/91 (30%), Positives = 31/91 (34%)
 Frame = +2

Query: 257 G*EGDQGDRGLAQQPNLQRFTQKQKFLEHPRYIITSSVFGGESGVSNPCNCWFQPSGPRR 436
           G  GDQGD+G A QP                    S    GE G   P     +P  P  
Sbjct: 160 GLPGDQGDKGEAGQPGQP----------------GSDAAPGEQGPKGPNGAPGKPGAPGA 203

Query: 437 GWTEARSPLLAAHLAVQHGAAGNTKNPSPSG 529
              E    L A    VQ G  G+T  P P G
Sbjct: 204 PGDEG---LPAVCEPVQKGEPGSTGEPGPVG 231


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,483,514
Number of Sequences: 219361
Number of extensions: 2248754
Number of successful extensions: 6228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6225
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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