ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15b05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome... 404 e-109
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 404 e-109
3dbj|AK110441.1| Oryza sativa (japonica cultivar-group) cDNA clon... 396 e-107
4dbj|AK108312.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 9e-55
5dbj|AK119621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 6e-16
6dbj|AK070558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 6e-16
7ref|NM_196951.1| Oryza sativa (japonica cultivar-group) putative... 58 3e-05
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
9gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079... 58 3e-05
10dbj|AK105737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
11dbj|AK101007.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
12dbj|AK059075.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
13gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 58 3e-05
14gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.008
16gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.008
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
19dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
20dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.008
21dbj|AK120596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
22dbj|AK072119.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.008
23gb|AY105791.1| Zea mays PCO061743 mRNA sequence 50 0.008
24emb|Z69370.2|CSNITR1 Cucumis sativus mRNA for nitrite transporte... 48 0.031
25ref|NM_185156.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.48
26gb|AY220099.1| Sphingomonas elodea strain ATCC31461 nitrogen ass... 44 0.48
27gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 44 0.48
28gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genom... 44 0.48
29dbj|AK099193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
30dbj|AK058972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.48
31gb|AC121281.19| Mus musculus chromosome 3, clone RP23-61G16, com... 42 1.9
32gb|DQ069385.1| Acorus americanus ATP synthase CF0 B chain (atpF)... 42 1.9
33gb|AC123789.6| Homo sapiens chromosome 11, clone RP5-998N23, com... 42 1.9
34emb|BX248359.1| Corynebacterium diphtheriae gravis NCTC13129, co... 42 1.9
35gb|AE005773.1| Caulobacter crescentus CB15 section 99 of 359 of ... 42 1.9
36gb|AC007391.3| Homo sapiens BAC clone RP11-429J10 from 2, comple... 42 1.9
37dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.9
38emb|AJ879453.1| Acorus calamus chloroplast, complete genome 42 1.9
39ref|NM_190326.1| Oryza sativa (japonica cultivar-group), predic... 40 7.5
40ref|XM_477279.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.5
41gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complet... 40 7.5
42ref|XM_581025.2| PREDICTED: Bos taurus similar to Replication pr... 40 7.5
43ref|XM_957962.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.5
44ref|XM_325547.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.5
45gb|AC147367.3| Mus musculus BAC clone RP24-424M5 from chromosome... 40 7.5
46ref|XM_756594.1| Ustilago maydis 521 hypothetical protein (UM055... 40 7.5
47gb|AC133186.4| Mus musculus BAC clone RP23-320D8 from chromosome... 40 7.5
48emb|AL390856.9| Human DNA sequence from clone GS1-122H1 on chrom... 40 7.5
49gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosom... 40 7.5
50gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 7.5
51dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
52gb|AE012356.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 7.5
53gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 7.5
54dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
55dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
56gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell ... 40 7.5
57gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, comple... 40 7.5
58ref|XM_215056.1| PREDICTED: Rattus norvegicus similar to Hmx2 pr... 40 7.5
59gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complet... 40 7.5
60dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
61dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
62dbj|AK109741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
63gb|AY106418.1| Zea mays PCO154787 mRNA sequence 40 7.5
64gb|AF068845.1|AF068845 Mycobacteriophage TM4, complete genome 40 7.5
65emb|BX629358.1|CNS09SBU Tetraodon nigroviridis BAC sequence 40 7.5 
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02,
             complete sequence
          Length = 178061

 Score =  404 bits (204), Expect = e-109
 Identities = 303/336 (90%)
 Strand = Plus / Plus

                                                                         
Query: 216   gccatttttgtggatggagggcagctcgcactccttgtggtggtcaccgtcttccgccaa 275
             |||||||||||||| |||||  ||||| |||||||| | ||  ||  | || || |||| 
Sbjct: 42439 gccatttttgtggacggaggagagctcacactccttctcgtcatcgtcttcctctgccac 42498

                                                                         
Query: 276   ctccaatggcttcatggtgtagaaatggaagcagatgaggtagtagccaaggttgagcac 335
             ||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct: 42499 ctctaatggcttcatggtgtagaagtggaagcagacgaggtagtatccaaggttgagcac 42558

                                                                         
Query: 336   catgaggcaggtgacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctg 395
             |||||||  |||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 42559 catgagggtggtgacgagccagtagtagcagtccagcctgccccggttgatgttgtcctg 42618

                                                                         
Query: 396   gagccagtcgccgctgccccgcgtggcgctctgcaccgccgtcacgagcaccgtgcccat 455
             |||||| ||||||| ||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct: 42619 gagccactcgccgccgccgcgcgtggcgcgctgcaccgccgtgacgagcaccgtgcccat 42678

                                                                         
Query: 456   gtagctgccgagggaggccgagagccagaagagcgcggcggcggtgctgcgcatgctctc 515
             |||| |||||||||||   |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 42679 gtagttgccgagggagctggagagccagaagagcgcggcggcgctgctgcgcatgctctc 42738

                                                 
Query: 516   cggcgcctggtcgtacaggaactccatgtgccccac 551
             ||||||||||||||||||||||||||||||| ||||
Sbjct: 42739 cggcgcctggtcgtacaggaactccatgtgcgccac 42774



 Score =  222 bits (112), Expect = 9e-55
 Identities = 228/267 (85%), Gaps = 6/267 (2%)
 Strand = Plus / Minus

                                                                         
Query: 285   cttcatggtgtagaaatggaagcagatgaggtagtagccaaggttgagcaccatgaggca 344
             ||||| |||||| ||||||||||| | || ||||||| | ||||||||||||| |||| |
Sbjct: 83910 cttcaaggtgtaaaaatggaagcaaacgaagtagtaggcgaggttgagcaccaagaggaa 83851

                                                                         
Query: 345   ggtgacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagccagtc 404
             |||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 83850 ggtgacgagccagtagtagtagtccagcctccccctgttgatgttgtcctggagccactc 83791

                                                                         
Query: 405   gccgctgccccgcgtggcgctctgcaccgccgtcacgagcaccgtgcccatgtagctgcc 464
              || ||||      |||||||||||||| |||| || ||||||||||||| |||| ||||
Sbjct: 83790 ccctctgc------tggcgctctgcaccaccgtgaccagcaccgtgcccaggtagttgcc 83737

                                                                         
Query: 465   gagggaggccgagagccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctg 524
             ||||||| | | || |||||| ||||| || || | ||| |||||||||||||||| |||
Sbjct: 83736 gagggagccggcgacccagaacagcgccgccgccgagctccgcatgctctccggcgactg 83677

                                        
Query: 525   gtcgtacaggaactccatgtgccccac 551
             |||||| ||||||||||||||||||||
Sbjct: 83676 gtcgtagaggaactccatgtgccccac 83650



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                         
Query: 477   gagccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctggtcgtacaggaa 536
             ||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 84702 gagccagtagagcgccgccgcggtgctccgcatgctctccggcgcctggtcgtagaggaa 84761

                    
Query: 537   ctccatg 543
             |||||||
Sbjct: 84762 ctccatg 84768



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 349   acgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagcca 401
             |||||||||||||||  ||||||||| |||||||||| |||||||||||||||
Sbjct: 97872 acgagccagtagtagcggtccagcctcccccggttgaggttgtcctggagcca 97820



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 478   agccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctggtcgtacaggaac 537
             |||||| | ||||| || || ||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 97743 agccagtacagcgccgccgccgtgctccgcatgccctcgggcgcctggtcgtacaggaac 97684

                   
Query: 538   tccatg 543
             ||||||
Sbjct: 97683 tccatg 97678



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 348   gacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagcca 401
             ||||||||||||||||  ||||||| || | ||||||| ||||||||| |||||
Sbjct: 84573 gacgagccagtagtagctgtccagcttggctcggttgaggttgtcctgcagcca 84626



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 427   tgcaccgccgtcacgagcaccgtgcccatgtagct 461
             |||||||||||||| |||| ||||| |||||||||
Sbjct: 97794 tgcaccgccgtcaccagcagcgtgctcatgtagct 97760
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  404 bits (204), Expect = e-109
 Identities = 303/336 (90%)
 Strand = Plus / Plus

                                                                            
Query: 216      gccatttttgtggatggagggcagctcgcactccttgtggtggtcaccgtcttccgccaa 275
                |||||||||||||| |||||  ||||| |||||||| | ||  ||  | || || |||| 
Sbjct: 19901275 gccatttttgtggacggaggagagctcacactccttctcgtcatcgtcttcctctgccac 19901334

                                                                            
Query: 276      ctccaatggcttcatggtgtagaaatggaagcagatgaggtagtagccaaggttgagcac 335
                ||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct: 19901335 ctctaatggcttcatggtgtagaagtggaagcagacgaggtagtatccaaggttgagcac 19901394

                                                                            
Query: 336      catgaggcaggtgacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctg 395
                |||||||  |||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 19901395 catgagggtggtgacgagccagtagtagcagtccagcctgccccggttgatgttgtcctg 19901454

                                                                            
Query: 396      gagccagtcgccgctgccccgcgtggcgctctgcaccgccgtcacgagcaccgtgcccat 455
                |||||| ||||||| ||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct: 19901455 gagccactcgccgccgccgcgcgtggcgcgctgcaccgccgtgacgagcaccgtgcccat 19901514

                                                                            
Query: 456      gtagctgccgagggaggccgagagccagaagagcgcggcggcggtgctgcgcatgctctc 515
                |||| |||||||||||   |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 19901515 gtagttgccgagggagctggagagccagaagagcgcggcggcgctgctgcgcatgctctc 19901574

                                                    
Query: 516      cggcgcctggtcgtacaggaactccatgtgccccac 551
                ||||||||||||||||||||||||||||||| ||||
Sbjct: 19901575 cggcgcctggtcgtacaggaactccatgtgcgccac 19901610



 Score =  222 bits (112), Expect = 9e-55
 Identities = 228/267 (85%), Gaps = 6/267 (2%)
 Strand = Plus / Minus

                                                                            
Query: 285      cttcatggtgtagaaatggaagcagatgaggtagtagccaaggttgagcaccatgaggca 344
                ||||| |||||| ||||||||||| | || ||||||| | ||||||||||||| |||| |
Sbjct: 19942746 cttcaaggtgtaaaaatggaagcaaacgaagtagtaggcgaggttgagcaccaagaggaa 19942687

                                                                            
Query: 345      ggtgacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagccagtc 404
                |||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 19942686 ggtgacgagccagtagtagtagtccagcctccccctgttgatgttgtcctggagccactc 19942627

                                                                            
Query: 405      gccgctgccccgcgtggcgctctgcaccgccgtcacgagcaccgtgcccatgtagctgcc 464
                 || ||||      |||||||||||||| |||| || ||||||||||||| |||| ||||
Sbjct: 19942626 ccctctgc------tggcgctctgcaccaccgtgaccagcaccgtgcccaggtagttgcc 19942573

                                                                            
Query: 465      gagggaggccgagagccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctg 524
                ||||||| | | || |||||| ||||| || || | ||| |||||||||||||||| |||
Sbjct: 19942572 gagggagccggcgacccagaacagcgccgccgccgagctccgcatgctctccggcgactg 19942513

                                           
Query: 525      gtcgtacaggaactccatgtgccccac 551
                |||||| ||||||||||||||||||||
Sbjct: 19942512 gtcgtagaggaactccatgtgccccac 19942486



 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Plus

                                                                            
Query: 477      gagccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctggtcgtacaggaa 536
                ||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 19943538 gagccagtagagcgccgccgcggtgctccgcatgctctccggcgcctggtcgtagaggaa 19943597

                       
Query: 537      ctccatg 543
                |||||||
Sbjct: 19943598 ctccatg 19943604



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 349      acgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagcca 401
                |||||||||||||||  ||||||||| |||||||||| |||||||||||||||
Sbjct: 19956708 acgagccagtagtagcggtccagcctcccccggttgaggttgtcctggagcca 19956656



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 478      agccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctggtcgtacaggaac 537
                |||||| | ||||| || || ||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 19956579 agccagtacagcgccgccgccgtgctccgcatgccctcgggcgcctggtcgtacaggaac 19956520

                      
Query: 538      tccatg 543
                ||||||
Sbjct: 19956519 tccatg 19956514



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                      
Query: 348      gacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagcca 401
                ||||||||||||||||  ||||||| || | ||||||| ||||||||| |||||
Sbjct: 19943409 gacgagccagtagtagctgtccagcttggctcggttgaggttgtcctgcagcca 19943462



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 427      tgcaccgccgtcacgagcaccgtgcccatgtagct 461
                |||||||||||||| |||| ||||| |||||||||
Sbjct: 19956630 tgcaccgccgtcaccagcagcgtgctcatgtagct 19956596
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>dbj|AK110441.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-D04, full
            insert sequence
          Length = 2048

 Score =  396 bits (200), Expect = e-107
 Identities = 302/336 (89%)
 Strand = Plus / Minus

                                                                        
Query: 216  gccatttttgtggatggagggcagctcgcactccttgtggtggtcaccgtcttccgccaa 275
            |||||||||||||| |||||  ||||| |||||||| | ||  ||  | || || |||| 
Sbjct: 1723 gccatttttgtggacggaggagagctcacactccttctcgtcatcgtcttcctctgccac 1664

                                                                        
Query: 276  ctccaatggcttcatggtgtagaaatggaagcagatgaggtagtagccaaggttgagcac 335
            ||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||
Sbjct: 1663 ctctaatggcttcatggtgtagaagtggaagcagacgaggtagtatccaaggttgagcac 1604

                                                                        
Query: 336  catgaggcaggtgacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctg 395
            | |||||  |||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 1603 cgtgagggtggtgacgagccagtagtagcagtccagcctgccccggttgatgttgtcctg 1544

                                                                        
Query: 396  gagccagtcgccgctgccccgcgtggcgctctgcaccgccgtcacgagcaccgtgcccat 455
            |||||| ||||||| ||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct: 1543 gagccactcgccgccgccgcgcgtggcgcgctgcaccgccgtgacgagcaccgtgcccat 1484

                                                                        
Query: 456  gtagctgccgagggaggccgagagccagaagagcgcggcggcggtgctgcgcatgctctc 515
            |||| |||||||||||   |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1483 gtagttgccgagggagctggagagccagaagagcgcggcggcgctgctgcgcatgctctc 1424

                                                
Query: 516  cggcgcctggtcgtacaggaactccatgtgccccac 551
            ||||||||||||||||||||||||||||||| ||||
Sbjct: 1423 cggcgcctggtcgtacaggaactccatgtgcgccac 1388
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>dbj|AK108312.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-141-G01, full
           insert sequence
          Length = 737

 Score =  222 bits (112), Expect = 9e-55
 Identities = 228/267 (85%), Gaps = 6/267 (2%)
 Strand = Plus / Minus

                                                                       
Query: 285 cttcatggtgtagaaatggaagcagatgaggtagtagccaaggttgagcaccatgaggca 344
           ||||| |||||| ||||||||||| | || ||||||| | ||||||||||||| |||| |
Sbjct: 550 cttcaaggtgtaaaaatggaagcaaacgaagtagtaggcgaggttgagcaccaagaggaa 491

                                                                       
Query: 345 ggtgacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagccagtc 404
           |||||||||||||||||||  ||||||||| |||| ||||||||||||||||||||| ||
Sbjct: 490 ggtgacgagccagtagtagtagtccagcctccccctgttgatgttgtcctggagccactc 431

                                                                       
Query: 405 gccgctgccccgcgtggcgctctgcaccgccgtcacgagcaccgtgcccatgtagctgcc 464
            || ||||      |||||||||||||| |||| || ||||||||||||| |||| ||||
Sbjct: 430 ccctctgc------tggcgctctgcaccaccgtgaccagcaccgtgcccaggtagttgcc 377

                                                                       
Query: 465 gagggaggccgagagccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctg 524
           ||||||| | | || |||||| ||||| || || | ||| |||||||||||||||| |||
Sbjct: 376 gagggagccggcgacccagaacagcgccgccgccgagctccgcatgctctccggcgactg 317

                                      
Query: 525 gtcgtacaggaactccatgtgccccac 551
           |||||| ||||||||||||||||||||
Sbjct: 316 gtcgtagaggaactccatgtgccccac 290
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>dbj|AK119621.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-H03, full
            insert sequence
          Length = 2086

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 477  gagccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctggtcgtacaggaa 536
            ||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 1618 gagccagtagagcgccgccgcggtgctccgcatgctctccggcgcctggtcgtagaggaa 1559

                   
Query: 537  ctccatg 543
            |||||||
Sbjct: 1558 ctccatg 1552



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 348  gacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagcca 401
            ||||||||||||||||  ||||||| || | ||||||| ||||||||| |||||
Sbjct: 1747 gacgagccagtagtagctgtccagcttggctcggttgaggttgtcctgcagcca 1694
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>dbj|AK070558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060I20, full
            insert sequence
          Length = 2209

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 477  gagccagaagagcgcggcggcggtgctgcgcatgctctccggcgcctggtcgtacaggaa 536
            ||||||| ||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct: 1619 gagccagtagagcgccgccgcggtgctccgcatgctctccggcgcctggtcgtagaggaa 1560

                   
Query: 537  ctccatg 543
            |||||||
Sbjct: 1559 ctccatg 1553



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 348  gacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagcca 401
            ||||||||||||||||  ||||||| || | ||||||| ||||||||| |||||
Sbjct: 1748 gacgagccagtagtagctgtccagcttggctcggttgaggttgtcctgcagcca 1695
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>ref|NM_196951.1| Oryza sativa (japonica cultivar-group) putative peptide transport
            protein (OSJNBa0079L16.9), mRNA
          Length = 1824

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 507  catgctctccggcgcctggtcgtacaggaactccatgtgccccac 551
            |||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 1491 catgctctccggcgcctggtcgtagaagaactcgatctgccccac 1447
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                             
Query: 507      catgctctccggcgcctggtcgtacaggaactccatgtgccccac 551
                |||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 16863506 catgctctccggcgcctggtcgtagaagaactcgatctgccccac 16863462
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>gb|AC026815.8|AC026815 Oryza sativa chromosome 10 BAC OSJNBa0079L16 genomic sequence, complete
             sequence
          Length = 147452

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 507   catgctctccggcgcctggtcgtacaggaactccatgtgccccac 551
             |||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 47958 catgctctccggcgcctggtcgtagaagaactcgatctgccccac 47914
to top
>dbj|AK105737.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-A02, full
            insert sequence
          Length = 2061

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 507  catgctctccggcgcctggtcgtacaggaactccatgtgccccac 551
            |||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 1579 catgctctccggcgcctggtcgtagaagaactcgatctgccccac 1535
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>dbj|AK101007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023148F24, full
            insert sequence
          Length = 1606

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 507  catgctctccggcgcctggtcgtacaggaactccatgtgccccac 551
            |||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 1133 catgctctccggcgcctggtcgtagaagaactcgatctgccccac 1089
to top
>dbj|AK059075.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-A04, full
            insert sequence
          Length = 2055

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 507  catgctctccggcgcctggtcgtacaggaactccatgtgccccac 551
            |||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 1579 catgctctccggcgcctggtcgtagaagaactcgatctgccccac 1535
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                             
Query: 507      catgctctccggcgcctggtcgtacaggaactccatgtgccccac 551
                |||||||||||||||||||||||| | |||||| || ||||||||
Sbjct: 16872546 catgctctccggcgcctggtcgtagaagaactcgatctgccccac 16872502
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>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09,
              complete sequence
          Length = 167222

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 507    catgctctccggcgcctggtcgtacaggaactc 539
              |||||||||||||||||||||||| | ||||||
Sbjct: 151784 catgctctccggcgcctggtcgtagaagaactc 151816
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 507     catgctctccggcgcctggtcgtacaggaactc 539
               |||||||||||||||||||||||| | ||||||
Sbjct: 2114361 catgctctccggcgcctggtcgtagaagaactc 2114393



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 501      gctgcgcatgctctccggcgcctggtcgta 530
                |||||||||||| |||||| ||||||||||
Sbjct: 34270976 gctgcgcatgctgtccggcacctggtcgta 34271005
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>gb|AC137930.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0030C11, complete sequence
          Length = 156647

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 507  catgctctccggcgcctggtcgtacaggaactc 539
            |||||||||||||||||||||||| | ||||||
Sbjct: 4655 catgctctccggcgcctggtcgtagaagaactc 4687
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                    
Query: 500     tgctgcgcatgctctccggcgcctggtcgtacaggaactccatgtgccccacg 552
               |||| ||||||||||| |||| ||||||||||| |||||| | ||| ||||||
Sbjct: 8754344 tgctccgcatgctctctggcgactggtcgtacatgaactcgaggtgacccacg 8754292



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                       
Query: 348     gacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagccagt 403
               ||||| ||||||| ||  ||| |||||||| ||||||||||||||  |||||||||
Sbjct: 8754502 gacgatccagtagaagtagtcgagcctgccgcggttgatgttgtcggggagccagt 8754447
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                
Query: 507     catgctctccggcgcctggtcgtacaggaactc 539
               |||||||||||||||||||||||| | ||||||
Sbjct: 2114373 catgctctccggcgcctggtcgtagaagaactc 2114405



 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 501      gctgcgcatgctctccggcgcctggtcgta 530
                |||||||||||| |||||| ||||||||||
Sbjct: 34361448 gctgcgcatgctgtccggcacctggtcgta 34361477
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>dbj|AP005382.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1001_B06
          Length = 134810

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 500   tgctgcgcatgctctccggcgcctggtcgtacaggaactccatgtgccccacg 552
             |||| ||||||||||| |||| ||||||||||| |||||| | ||| ||||||
Sbjct: 24665 tgctccgcatgctctctggcgactggtcgtacatgaactcgaggtgacccacg 24613



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 348   gacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagccagt 403
             ||||| ||||||| ||  ||| |||||||| ||||||||||||||  |||||||||
Sbjct: 24823 gacgatccagtagaagtagtcgagcctgccgcggttgatgttgtcggggagccagt 24768
to top
>dbj|AP004993.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0037N01
          Length = 174085

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 500    tgctgcgcatgctctccggcgcctggtcgtacaggaactccatgtgccccacg 552
              |||| ||||||||||| |||| ||||||||||| |||||| | ||| ||||||
Sbjct: 169326 tgctccgcatgctctctggcgactggtcgtacatgaactcgaggtgacccacg 169274



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 348    gacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagccagt 403
              ||||| ||||||| ||  ||| |||||||| ||||||||||||||  |||||||||
Sbjct: 169484 gacgatccagtagaagtagtcgagcctgccgcggttgatgttgtcggggagccagt 169429
to top
>dbj|AK120596.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013148A07, full
            insert sequence
          Length = 1998

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 500  tgctgcgcatgctctccggcgcctggtcgtacaggaactccatgtgccccacg 552
            |||| ||||||||||| |||| ||||||||||| |||||| | ||| ||||||
Sbjct: 1503 tgctccgcatgctctctggcgactggtcgtacatgaactcgaggtgacccacg 1451



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                    
Query: 348  gacgagccagtagtaggcgtccagcctgccccggttgatgttgtcctggagccagt 403
            ||||| ||||||| ||  ||| |||||||| ||||||||||||||  |||||||||
Sbjct: 1661 gacgatccagtagaagtagtcgagcctgccgcggttgatgttgtcggggagccagt 1606
to top
>dbj|AK072119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123D02, full
            insert sequence
          Length = 2221

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 507  catgctctccggcgcctggtcgtacaggaactc 539
            |||||||||||||||||||||||| | ||||||
Sbjct: 1616 catgctctccggcgcctggtcgtagaagaactc 1584
to top
>gb|AY105791.1| Zea mays PCO061743 mRNA sequence
          Length = 1045

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 507 catgctctccggcgcctggtcgtacaggaactc 539
           |||||||||||||||||||||||| | ||||||
Sbjct: 605 catgctctccggcgcctggtcgtagaagaactc 573
to top
>emb|Z69370.2|CSNITR1 Cucumis sativus mRNA for nitrite transporter (NiTR1 gene)
          Length = 1916

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 510  gctctccggcgcctggtcgtacaggaactcca 541
            ||||||||||| ||||||||||| ||||||||
Sbjct: 1518 gctctccggcgactggtcgtacatgaactcca 1487
to top
>ref|NM_185156.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1758

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 501  gctgcgcatgctctccggcgcctggtcgta 530
            |||||||||||| |||||| ||||||||||
Sbjct: 1449 gctgcgcatgctgtccggcacctggtcgta 1420
to top
>gb|AY220099.1| Sphingomonas elodea strain ATCC31461 nitrogen assimilation and gellan
             polysaccharide biosynthesis gene clusters, partial
             sequence
          Length = 19564

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 477   gagccagaagagcgcggcggcggtgc 502
             ||||||| ||||||||||||||||||
Sbjct: 16305 gagccagtagagcgcggcggcggtgc 16330
to top
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 286     ttcatggtgtagaaatggaagc 307
               ||||||||||||||||||||||
Sbjct: 4157832 ttcatggtgtagaaatggaagc 4157811
to top
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
             sequence
          Length = 143205

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 501   gctgcgcatgctctccggcgcctggtcgta 530
             |||||||||||| |||||| ||||||||||
Sbjct: 64022 gctgcgcatgctgtccggcacctggtcgta 63993
to top
>dbj|AK099193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109G05, full
            insert sequence
          Length = 2088

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 501  gctgcgcatgctctccggcgcctggtcgta 530
            |||||||||||| |||||| ||||||||||
Sbjct: 1603 gctgcgcatgctgtccggcacctggtcgta 1574
to top
>dbj|AK058972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D02, full
            insert sequence
          Length = 2129

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 501  gctgcgcatgctctccggcgcctggtcgta 530
            |||||||||||| |||||| ||||||||||
Sbjct: 1602 gctgcgcatgctgtccggcacctggtcgta 1573
to top
>gb|AC121281.19| Mus musculus chromosome 3, clone RP23-61G16, complete sequence
          Length = 196761

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 12    ttatactatactacagtacta 32
             |||||||||||||||||||||
Sbjct: 98668 ttatactatactacagtacta 98688



 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tatactatactacagtacta 32
             ||||||||||||||||||||
Sbjct: 98762 tatactatactacagtacta 98781
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>gb|DQ069385.1| Acorus americanus ATP synthase CF0 B chain (atpF) gene, partial
           cds; chloroplast
          Length = 552

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 294 gtagaaatggaagcagatgag 314
           |||||||||||||||||||||
Sbjct: 262 gtagaaatggaagcagatgag 282
to top
>gb|AC123789.6| Homo sapiens chromosome 11, clone RP5-998N23, complete sequence
          Length = 137691

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     atgcttatactatactacagt 28
             |||||||||||||||||||||
Sbjct: 15569 atgcttatactatactacagt 15549
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>emb|BX248359.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             6/8
          Length = 349895

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 239   gctcgcactccttgtggtggt 259
             |||||||||||||||||||||
Sbjct: 46960 gctcgcactccttgtggtggt 46940
to top
>gb|AE005773.1| Caulobacter crescentus CB15 section 99 of 359 of the complete genome
          Length = 10431

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 485  agagcgcggcggcggtgctgcgcat 509
            |||||||||||||||||| ||||||
Sbjct: 1510 agagcgcggcggcggtgcagcgcat 1486
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>gb|AC007391.3| Homo sapiens BAC clone RP11-429J10 from 2, complete sequence
          Length = 183991

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 177   atcttattcttataccaagcc 197
             |||||||||||||||||||||
Sbjct: 55074 atcttattcttataccaagcc 55054
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 286     ttcatggtgtagaaatggaag 306
               |||||||||||||||||||||
Sbjct: 1548100 ttcatggtgtagaaatggaag 1548120
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>emb|AJ879453.1| Acorus calamus chloroplast, complete genome
          Length = 153821

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 294   gtagaaatggaagcagatgag 314
             |||||||||||||||||||||
Sbjct: 12148 gtagaaatggaagcagatgag 12128
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>ref|NM_190326.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1674

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 517  ggcgcctggtcgtacaggaactccatgtgccc 548
            |||||||||||||| | ||||||||| |||||
Sbjct: 1421 ggcgcctggtcgtagaagaactccatctgccc 1390
to top
>ref|XM_477279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1536

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 488 gcgcggcggcggtgctgcgc 507
           ||||||||||||||||||||
Sbjct: 218 gcgcggcggcggtgctgcgc 237
to top
>gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complete sequence
          Length = 192476

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    atttttgtggatggagggca 238
              ||||||||||||||||||||
Sbjct: 126568 atttttgtggatggagggca 126587
to top
>ref|XM_581025.2| PREDICTED: Bos taurus similar to Replication protein A 70 kDa
            DNA-binding subunit (RP-A) (RF-A) (Replication factor-A
            protein 1) (Single-stranded DNA-binding protein)
            (LOC504844), mRNA
          Length = 2732

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 420  ggcgctctgcaccgccgtca 439
            ||||||||||||||||||||
Sbjct: 1924 ggcgctctgcaccgccgtca 1905
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>ref|XM_957962.1| Neurospora crassa OR74A hypothetical protein (NCU05693.1) partial
           mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 aggtagtagccaaggttgag 332
           ||||||||||||||||||||
Sbjct: 782 aggtagtagccaaggttgag 763
to top
>ref|XM_325547.1| Neurospora crassa OR74A hypothetical protein (NCU05693.1) partial
           mRNA
          Length = 2184

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 313 aggtagtagccaaggttgag 332
           ||||||||||||||||||||
Sbjct: 782 aggtagtagccaaggttgag 763
to top
>gb|AC147367.3| Mus musculus BAC clone RP24-424M5 from chromosome 18, complete sequence
          Length = 175316

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    tagaaatggaagcagatgag 314
              ||||||||||||||||||||
Sbjct: 114353 tagaaatggaagcagatgag 114334
to top
>ref|XM_756594.1| Ustilago maydis 521 hypothetical protein (UM05540.1) partial mRNA
          Length = 6357

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 379  cggttgatgttgtcctggagccag 402
            ||||||||||||||||| ||||||
Sbjct: 1307 cggttgatgttgtcctgaagccag 1284
to top
>gb|AC133186.4| Mus musculus BAC clone RP23-320D8 from chromosome 18, complete sequence
          Length = 209380

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    tagaaatggaagcagatgag 314
              ||||||||||||||||||||
Sbjct: 138194 tagaaatggaagcagatgag 138213
to top
>emb|AL390856.9| Human DNA sequence from clone GS1-122H1 on chromosome 1q25.1-25.3
             Contains two novel genes (LOC400799) and a yippee protein
             pseudogene, complete sequence
          Length = 143714

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 316   tagtagccaaggttgagcaccatg 339
             ||||||||||||||||| ||||||
Sbjct: 79986 tagtagccaaggttgagaaccatg 79963
to top
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence
          Length = 204620

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   agatgaggtagtagccaagg 327
             ||||||||||||||||||||
Sbjct: 98524 agatgaggtagtagccaagg 98505
to top
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 422     cgctctgcaccgccgtcacg 441
               ||||||||||||||||||||
Sbjct: 1291077 cgctctgcaccgccgtcacg 1291058
to top
>dbj|AP003791.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1065G12
          Length = 165006

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 517    ggcgcctggtcgtacaggaactccatgtgccc 548
              |||||||||||||| | ||||||||| |||||
Sbjct: 105013 ggcgcctggtcgtagaagaactccatctgccc 104982
to top
>gb|AE012356.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 264
            of 460 of the complete genome
          Length = 10623

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  gccgctggcggcgccgccgt 214
            ||||||||||||||||||||
Sbjct: 1657 gccgctggcggcgccgccgt 1638
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 195     gccgctggcggcgccgccgt 214
               ||||||||||||||||||||
Sbjct: 2003389 gccgctggcggcgccgccgt 2003408
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 488     gcgcggcggcggtgctgcgc 507
               ||||||||||||||||||||
Sbjct: 8509793 gcgcggcggcggtgctgcgc 8509812
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 517      ggcgcctggtcgtacaggaactccatgtgccc 548
                |||||||||||||| | ||||||||| |||||
Sbjct: 39303307 ggcgcctggtcgtagaagaactccatctgccc 39303276
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>gb|AC083815.17|AC083815 Mus musculus 11 BAC RP23-270L8 (Roswell Park Cancer Institute Mouse BAC
             Library) complete sequence
          Length = 173810

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   ttcatggtgtagaaatggaa 305
             ||||||||||||||||||||
Sbjct: 73821 ttcatggtgtagaaatggaa 73840
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>gb|AC097715.3| Homo sapiens BAC clone RP11-563A13 from 2, complete sequence
          Length = 143642

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    tatacttactacagtataca 128
              ||||||||||||||||||||
Sbjct: 142418 tatacttactacagtataca 142437
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>ref|XM_215056.1| PREDICTED: Rattus norvegicus similar to Hmx2 protein (LOC293538),
           mRNA
          Length = 784

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 419 tggcgctctgcaccgccgtc 438
           ||||||||||||||||||||
Sbjct: 254 tggcgctctgcaccgccgtc 235
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>gb|AC019159.8| Homo sapiens BAC clone RP11-56O18 from 2, complete sequence
          Length = 163085

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 109 tatacttactacagtataca 128
           ||||||||||||||||||||
Sbjct: 776 tatacttactacagtataca 795
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>dbj|AP006757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0551C06
          Length = 149829

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 517   ggcgcctggtcgtacaggaactccatgtgccc 548
             |||||||||||||| | ||||||||| |||||
Sbjct: 84553 ggcgcctggtcgtagaagaactccatctgccc 84522
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>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0669H03
          Length = 167878

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 488   gcgcggcggcggtgctgcgc 507
             ||||||||||||||||||||
Sbjct: 42261 gcgcggcggcggtgctgcgc 42280
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>dbj|AK109741.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E02, full
           insert sequence
          Length = 1536

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 488 gcgcggcggcggtgctgcgc 507
           ||||||||||||||||||||
Sbjct: 218 gcgcggcggcggtgctgcgc 237
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>gb|AY106418.1| Zea mays PCO154787 mRNA sequence
          Length = 2101

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 517  ggcgcctggtcgtacaggaactccatgtgccccacg 552
            |||||||||||||| | ||||||||  |||||||||
Sbjct: 1667 ggcgcctggtcgtagaagaactccagctgccccacg 1632
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>gb|AF068845.1|AF068845 Mycobacteriophage TM4, complete genome
          Length = 52797

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 191   ccaagccgctggcggcgccgccgttgcc 218
             |||| ||||| |||||||||||||||||
Sbjct: 33822 ccaaaccgctcgcggcgccgccgttgcc 33795
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>emb|BX629358.1|CNS09SBU Tetraodon nigroviridis BAC sequence
          Length = 157345

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   tgtggatggagggcagctcg 243
             ||||||||||||||||||||
Sbjct: 44912 tgtggatggagggcagctcg 44893


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,415,770
Number of Sequences: 3902068
Number of extensions: 4415770
Number of successful extensions: 77899
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76897
Number of HSP's gapped (non-prelim): 1002
length of query: 552
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 529
effective length of database: 17,143,297,704
effective search space: 9068804485416
effective search space used: 9068804485416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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