ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467761.1| Oryza sativa (japonica cultivar-group), mRNA 319 7e-84
2dbj|AK099676.1| Oryza sativa (japonica cultivar-group) cDNA clon... 319 7e-84
3gb|AY110869.1| Zea mays CL9361_1 mRNA sequence 198 2e-47
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
5dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
6dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 165 2e-37
7gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete se... 54 6e-04
8gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete seq... 54 6e-04
9ref|XM_461819.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 2.3
10emb|AJ810120.1| Staphylococcus aureus DNA, type IIE Staphylococc... 42 2.3
11emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 42 2.3
12emb|AL662790.21| Mouse DNA sequence from clone RP23-53E2 on chro... 42 2.3
13gb|AC096763.2| Homo sapiens BAC clone RP11-625A6 from 4, complet... 42 2.3
14dbj|AB063173.1| Staphylococcus aureus DNA, type-IV staphylococca... 42 2.3
15gb|AC145507.3| Dasypus novemcinctus clone VMRC5-137J5, complete ... 40 9.2
16ref|NM_119181.2| Arabidopsis thaliana ATP binding AT4G30350 mRNA... 40 9.2
17gb|AY484589.1| Musa acuminata clone MuH9, genomic sequence 40 9.2
18gb|AC167135.3| Mus musculus chromosome 1, clone RP24-335L18, com... 40 9.2
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 9.2
20gb|AC160101.7| Mus musculus chromosome 1, clone RP24-126E20, com... 40 9.2
21emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosome 4, ... 40 9.2
22gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Can... 40 9.2
23gb|AC103753.2| Homo sapiens chromosome 15, clone RP11-460N1, com... 40 9.2
24gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, comple... 40 9.2
25gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 9.2
26gb|AC022839.8| Homo sapiens, clone RP11-191D5, complete sequence 40 9.2
27gb|AC008711.8| Homo sapiens chromosome 5 clone CTB-7G24, complet... 40 9.2
28gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, com... 40 9.2
29dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
30gb|AC017082.4| Homo sapiens BAC clone RP11-472M4 from 2, complet... 40 9.2
31gb|AF466200.2| Sorghum bicolor putative protein kinase gene, par... 40 9.2
32gb|AF160182.1|F17I23 Arabidopsis thaliana BAC F17I23 40 9.2
33emb|AL954846.32| Zebrafish DNA sequence from clone CH211-279C3 i... 40 9.2
34gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 9.2
35gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, compl... 40 9.2 
>ref|XM_467761.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1221

 Score =  319 bits (161), Expect = 7e-84
 Identities = 274/311 (88%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                        
Query: 358  acttccacactatatcacccaaaaacttcanagcaggaactcctctaatttccatgtcca 417
            ||||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 1219 acttccatactatatcgcccaaaaacttcagagcaggaacgcctcttatttccatgtcga 1160

                                                                        
Query: 418  cgagaggtgcttgcattatgttcaaccccatcaactctggatcactctttatcatatcca 477
            | ||||||||||| |||| ||||| |||||| | |||||||||| || ||||||||||||
Sbjct: 1159 caagaggtgcttggattaagttcagccccattagctctggatcattccttatcatatcca 1100

                                                                        
Query: 478  aagcacgtgtttgatcctttctttttatagcacaaaatttacagtctgatgatgaaggtg 537
            |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 1099 aagcacgtgtttgatcctttctttttatagcacagaatttacagtctgatgacgaaggtg 1040

                                                                        
Query: 538  gtagaacttggttaacaataagtctccttacaggaacactttccttttgcaaggaanaat 597
            |||||| |||||||||||| |||||| | || ||||||||||| |||   | |||| |||
Sbjct: 1039 gtagaatttggttaacaatgagtctcttaacgggaacactttcatttcttagggaagaat 980

                                                                        
Query: 598  gcaatctcgctgattcactgattgccatgaccgttgggaatcgtcacaataataaattca 657
            | | ||| ||||||||||| |||||||| || ||| ||||| |||||||| |||||||||
Sbjct: 979  gtagtcttgctgattcacttattgccatcactgtt-ggaatagtcacaattataaattca 921

                       
Query: 658  gtcgattctgt 668
            || ||||||||
Sbjct: 920  gttgattctgt 910
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>dbj|AK099676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013070D05, full
           insert sequence
          Length = 1220

 Score =  319 bits (161), Expect = 7e-84
 Identities = 274/311 (88%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                       
Query: 358 acttccacactatatcacccaaaaacttcanagcaggaactcctctaatttccatgtcca 417
           ||||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 794 acttccatactatatcgcccaaaaacttcagagcaggaacgcctcttatttccatgtcga 735

                                                                       
Query: 418 cgagaggtgcttgcattatgttcaaccccatcaactctggatcactctttatcatatcca 477
           | ||||||||||| |||| ||||| |||||| | |||||||||| || ||||||||||||
Sbjct: 734 caagaggtgcttggattaagttcagccccattagctctggatcattccttatcatatcca 675

                                                                       
Query: 478 aagcacgtgtttgatcctttctttttatagcacaaaatttacagtctgatgatgaaggtg 537
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 674 aagcacgtgtttgatcctttctttttatagcacagaatttacagtctgatgacgaaggtg 615

                                                                       
Query: 538 gtagaacttggttaacaataagtctccttacaggaacactttccttttgcaaggaanaat 597
           |||||| |||||||||||| |||||| | || ||||||||||| |||   | |||| |||
Sbjct: 614 gtagaatttggttaacaatgagtctcttaacgggaacactttcatttcttagggaagaat 555

                                                                       
Query: 598 gcaatctcgctgattcactgattgccatgaccgttgggaatcgtcacaataataaattca 657
           | | ||| ||||||||||| |||||||| || ||| ||||| |||||||| |||||||||
Sbjct: 554 gtagtcttgctgattcacttattgccatcactgtt-ggaatagtcacaattataaattca 496

                      
Query: 658 gtcgattctgt 668
           || ||||||||
Sbjct: 495 gttgattctgt 485
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>gb|AY110869.1| Zea mays CL9361_1 mRNA sequence
          Length = 1154

 Score =  198 bits (100), Expect = 2e-47
 Identities = 204/243 (83%)
 Strand = Plus / Plus

                                                                       
Query: 358 acttccacactatatcacccaaaaacttcanagcaggaactcctctaatttccatgtcca 417
           ||||||||| ||||||||||      || | ||| ||||| |||||||| ||||||||||
Sbjct: 488 acttccacagtatatcacccnnnnnnttgagagccggaacacctctaatctccatgtcca 547

                                                                       
Query: 418 cgagaggtgcttgcattatgttcaaccccatcaactctggatcactctttatcatatcca 477
           | ||||||||||| || |||||||| ||  | |||||||| ||| ||  |||||||||||
Sbjct: 548 caagaggtgcttggataatgttcaaaccttttaactctgggtcagtccgtatcatatcca 607

                                                                       
Query: 478 aagcacgtgtttgatcctttctttttatagcacaaaatttacagtctgatgatgaaggtg 537
           | ||||| |||||||||||||     |||| ||| ||||||||||| |||| ||||||||
Sbjct: 608 atgcacgcgtttgatcctttcnnnnnatagaacagaatttacagtccgatgttgaaggtg 667

                                                                       
Query: 538 gtagaacttggttaacaataagtctccttacaggaacactttccttttgcaaggaanaat 597
           | ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct: 668 gcagaacttggttcacaatgagtctccttacaggaacactttccttttgcaacgaagaat 727

              
Query: 598 gca 600
           |||
Sbjct: 728 gca 730
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  165 bits (83), Expect = 2e-37
 Identities = 124/138 (89%)
 Strand = Plus / Plus

                                                                            
Query: 358      acttccacactatatcacccaaaaacttcanagcaggaactcctctaatttccatgtcca 417
                ||||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 31271568 acttccatactatatcgcccaaaaacttcagagcaggaacgcctcttatttccatgtcga 31271627

                                                                            
Query: 418      cgagaggtgcttgcattatgttcaaccccatcaactctggatcactctttatcatatcca 477
                | ||||||||||| |||| ||||| |||||| | |||||||||| || ||||||||||||
Sbjct: 31271628 caagaggtgcttggattaagttcagccccattagctctggatcattccttatcatatcca 31271687

                                  
Query: 478      aagcacgtgtttgatcct 495
                ||||||||||||||||||
Sbjct: 31271688 aagcacgtgtttgatcct 31271705



 Score =  131 bits (66), Expect = 3e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                            
Query: 493      cctttctttttatagcacaaaatttacagtctgatgatgaaggtggtagaacttggttaa 552
                ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 31271798 cctttctttttatagcacagaatttacagtctgatgacgaaggtggtagaatttggttaa 31271857

                                                                            
Query: 553      caataagtctccttacaggaacactttccttttgcaaggaanaatgcaatctcgctgatt 612
                |||| |||||| | || ||||||||||| |||   | |||| |||| | ||| |||||||
Sbjct: 31271858 caatgagtctcttaacgggaacactttcatttcttagggaagaatgtagtcttgctgatt 31271917

                             
Query: 613      cactgattgccat 625
                |||| ||||||||
Sbjct: 31271918 cacttattgccat 31271930



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 634      ggaatcgtcacaataataaattcagtcgattctgt 668
                ||||| |||||||| ||||||||||| ||||||||
Sbjct: 31272030 ggaatagtcacaattataaattcagttgattctgt 31272064
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>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1734_E02
          Length = 168566

 Score =  165 bits (83), Expect = 2e-37
 Identities = 124/138 (89%)
 Strand = Plus / Plus

                                                                          
Query: 358    acttccacactatatcacccaaaaacttcanagcaggaactcctctaatttccatgtcca 417
              ||||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 151411 acttccatactatatcgcccaaaaacttcagagcaggaacgcctcttatttccatgtcga 151470

                                                                          
Query: 418    cgagaggtgcttgcattatgttcaaccccatcaactctggatcactctttatcatatcca 477
              | ||||||||||| |||| ||||| |||||| | |||||||||| || ||||||||||||
Sbjct: 151471 caagaggtgcttggattaagttcagccccattagctctggatcattccttatcatatcca 151530

                                
Query: 478    aagcacgtgtttgatcct 495
              ||||||||||||||||||
Sbjct: 151531 aagcacgtgtttgatcct 151548



 Score =  131 bits (66), Expect = 3e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                          
Query: 493    cctttctttttatagcacaaaatttacagtctgatgatgaaggtggtagaacttggttaa 552
              ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 151641 cctttctttttatagcacagaatttacagtctgatgacgaaggtggtagaatttggttaa 151700

                                                                          
Query: 553    caataagtctccttacaggaacactttccttttgcaaggaanaatgcaatctcgctgatt 612
              |||| |||||| | || ||||||||||| |||   | |||| |||| | ||| |||||||
Sbjct: 151701 caatgagtctcttaacgggaacactttcatttcttagggaagaatgtagtcttgctgatt 151760

                           
Query: 613    cactgattgccat 625
              |||| ||||||||
Sbjct: 151761 cacttattgccat 151773



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 634    ggaatcgtcacaataataaattcagtcgattctgt 668
              ||||| |||||||| ||||||||||| ||||||||
Sbjct: 151873 ggaatagtcacaattataaattcagttgattctgt 151907
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>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1118_G04
          Length = 134464

 Score =  165 bits (83), Expect = 2e-37
 Identities = 124/138 (89%)
 Strand = Plus / Plus

                                                                         
Query: 358   acttccacactatatcacccaaaaacttcanagcaggaactcctctaatttccatgtcca 417
             ||||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||||| |
Sbjct: 41436 acttccatactatatcgcccaaaaacttcagagcaggaacgcctcttatttccatgtcga 41495

                                                                         
Query: 418   cgagaggtgcttgcattatgttcaaccccatcaactctggatcactctttatcatatcca 477
             | ||||||||||| |||| ||||| |||||| | |||||||||| || ||||||||||||
Sbjct: 41496 caagaggtgcttggattaagttcagccccattagctctggatcattccttatcatatcca 41555

                               
Query: 478   aagcacgtgtttgatcct 495
             ||||||||||||||||||
Sbjct: 41556 aagcacgtgtttgatcct 41573



 Score =  131 bits (66), Expect = 3e-27
 Identities = 116/133 (87%)
 Strand = Plus / Plus

                                                                         
Query: 493   cctttctttttatagcacaaaatttacagtctgatgatgaaggtggtagaacttggttaa 552
             ||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 41666 cctttctttttatagcacagaatttacagtctgatgacgaaggtggtagaatttggttaa 41725

                                                                         
Query: 553   caataagtctccttacaggaacactttccttttgcaaggaanaatgcaatctcgctgatt 612
             |||| |||||| | || ||||||||||| |||   | |||| |||| | ||| |||||||
Sbjct: 41726 caatgagtctcttaacgggaacactttcatttcttagggaagaatgtagtcttgctgatt 41785

                          
Query: 613   cactgattgccat 625
             |||| ||||||||
Sbjct: 41786 cacttattgccat 41798



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 634   ggaatcgtcacaataataaattcagtcgattctgt 668
             ||||| |||||||| ||||||||||| ||||||||
Sbjct: 41898 ggaatagtcacaattataaattcagttgattctgt 41932
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>gb|AC144928.17| Medicago truncatula clone mth2-8a18, complete sequence
          Length = 138948

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 453   tctggatcactctttatcatatccaaagcacgtgtttgatcct 495
             |||||||||||||  |||||||| | |||||||||||||||||
Sbjct: 68381 tctggatcactctgaatcatatcaagagcacgtgtttgatcct 68339



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 72/88 (81%)
 Strand = Plus / Minus

                                                                         
Query: 493   cctttctttttatagcacaaaatttacagtctgatgatgaaggtggtagaacttggttaa 552
             |||||||||| || |||||||| || || || ||||  || ||||| |||| ||| || |
Sbjct: 68172 cctttcttttcattgcacaaaacttgcaatcagatgcagatggtggaagaagttgattga 68113

                                         
Query: 553   caataagtctccttacaggaacactttc 580
             |||| |||||| | ||||||||||||||
Sbjct: 68112 caatgagtctcttcacaggaacactttc 68085
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>gb|AC133709.11| Medicago truncatula clone mth2-7b3, complete sequence
          Length = 138950

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                        
Query: 453   tctggatcactctttatcatatccaaagcacgtgtttgatcct 495
             |||||||||||||  |||||||| | |||||||||||||||||
Sbjct: 70568 tctggatcactctgaatcatatcaagagcacgtgtttgatcct 70610



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 72/88 (81%)
 Strand = Plus / Plus

                                                                         
Query: 493   cctttctttttatagcacaaaatttacagtctgatgatgaaggtggtagaacttggttaa 552
             |||||||||| || |||||||| || || || ||||  || ||||| |||| ||| || |
Sbjct: 70777 cctttcttttcattgcacaaaacttgcaatcagatgcagatggtggaagaagttgattga 70836

                                         
Query: 553   caataagtctccttacaggaacactttc 580
             |||| |||||| | ||||||||||||||
Sbjct: 70837 caatgagtctcttcacaggaacactttc 70864
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>ref|XM_461819.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G06919g)
            partial mRNA
          Length = 3207

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 276  taaagaacttggattggataa 296
            |||||||||||||||||||||
Sbjct: 2766 taaagaacttggattggataa 2786
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>emb|AJ810120.1| Staphylococcus aureus DNA, type IIE Staphylococcal Cassette
            Chromosome mec (SCCmec), strain AR13.1/3330.2
          Length = 27029

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 516  ttacagtctgatgatgaaggt 536
            |||||||||||||||||||||
Sbjct: 3914 ttacagtctgatgatgaaggt 3934
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>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
              hansenii
          Length = 2051428

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 276    taaagaacttggattggataa 296
              |||||||||||||||||||||
Sbjct: 547657 taaagaacttggattggataa 547637
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>emb|AL662790.21| Mouse DNA sequence from clone RP23-53E2 on chromosome 11 Contains the
             5' end of a novel pseudogene (similar to hypothetical
             protein TR:Q8C517), 3 novel pseudogenes (similar to
             hypothetical protein TR:Q8C517) and the 5' end of the
             Col1a1 gene for pro-collagen type I alpha 1, complete
             sequence
          Length = 133405

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 517   tacagtctgatgatgaaggtg 537
             |||||||||||||||||||||
Sbjct: 62868 tacagtctgatgatgaaggtg 62888
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>gb|AC096763.2| Homo sapiens BAC clone RP11-625A6 from 4, complete sequence
          Length = 168710

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 511   aaaatttacagtctgatgatg 531
             |||||||||||||||||||||
Sbjct: 18221 aaaatttacagtctgatgatg 18201
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>dbj|AB063173.1| Staphylococcus aureus DNA, type-IV staphylococcal cassette chromosome
            mec, strain:JCSC1978(8/6-3P)
          Length = 21777

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 516  ttacagtctgatgatgaaggt 536
            |||||||||||||||||||||
Sbjct: 4215 ttacagtctgatgatgaaggt 4235
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>gb|AC145507.3| Dasypus novemcinctus clone VMRC5-137J5, complete sequence
          Length = 109381

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 125   tgggaggaaaatgcaactgt 144
             ||||||||||||||||||||
Sbjct: 89059 tgggaggaaaatgcaactgt 89078
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>ref|NM_119181.2| Arabidopsis thaliana ATP binding AT4G30350 mRNA, complete cds
          Length = 3236

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 484 gtgtttgatcctttcttttt 503
           ||||||||||||||||||||
Sbjct: 99  gtgtttgatcctttcttttt 118
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>gb|AY484589.1| Musa acuminata clone MuH9, genomic sequence
          Length = 82723

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    acaaacaagcagaacactac 108
             ||||||||||||||||||||
Sbjct: 37139 acaaacaagcagaacactac 37120
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>gb|AC167135.3| Mus musculus chromosome 1, clone RP24-335L18, complete sequence
          Length = 157775

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 450    aactctggatcactctttat 469
              ||||||||||||||||||||
Sbjct: 107786 aactctggatcactctttat 107805
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 520     agtctgatgatgaaggtggt 539
               ||||||||||||||||||||
Sbjct: 5741641 agtctgatgatgaaggtggt 5741622
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>gb|AC160101.7| Mus musculus chromosome 1, clone RP24-126E20, complete sequence
          Length = 159705

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 450   aactctggatcactctttat 469
             ||||||||||||||||||||
Sbjct: 44495 aactctggatcactctttat 44476
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>emb|AL161576.2|ATCHRIV72 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72
          Length = 198924

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 484    gtgtttgatcctttcttttt 503
              ||||||||||||||||||||
Sbjct: 187489 gtgtttgatcctttcttttt 187508
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>gb|AC129805.7| Homo sapiens 12 BAC RP11-125N22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 165378

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 488    ttgatcctttctttttatag 507
              ||||||||||||||||||||
Sbjct: 134156 ttgatcctttctttttatag 134175
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>gb|AC103753.2| Homo sapiens chromosome 15, clone RP11-460N1, complete sequence
          Length = 179822

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 440   caaccccatcaactctggat 459
             ||||||||||||||||||||
Sbjct: 32077 caaccccatcaactctggat 32096
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>gb|AC107486.4| Homo sapiens BAC clone RP11-814I21 from 4, complete sequence
          Length = 59463

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   tttctttttatagcacaaaa 514
             ||||||||||||||||||||
Sbjct: 19461 tttctttttatagcacaaaa 19442
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>gb|AC104179.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0021B21, from chromosome 3, complete sequence
          Length = 166777

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 520   agtctgatgatgaaggtggt 539
             ||||||||||||||||||||
Sbjct: 89530 agtctgatgatgaaggtggt 89549
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>gb|AC022839.8| Homo sapiens, clone RP11-191D5, complete sequence
          Length = 158004

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   aactgtgtaaccaatcttgt 158
             ||||||||||||||||||||
Sbjct: 96175 aactgtgtaaccaatcttgt 96156
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>gb|AC008711.8| Homo sapiens chromosome 5 clone CTB-7G24, complete sequence
          Length = 101036

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   tgtttgatcctttcttttta 504
             ||||||||||||||||||||
Sbjct: 25580 tgtttgatcctttcttttta 25599
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>gb|AC016355.8| Homo sapiens chromosome 15, clone RP11-502I4, complete sequence
          Length = 186428

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 440   caaccccatcaactctggat 459
             ||||||||||||||||||||
Sbjct: 32798 caaccccatcaactctggat 32779
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 520     agtctgatgatgaaggtggt 539
               ||||||||||||||||||||
Sbjct: 5740854 agtctgatgatgaaggtggt 5740835
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>gb|AC017082.4| Homo sapiens BAC clone RP11-472M4 from 2, complete sequence
          Length = 183783

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 490   gatcctttctttttatagca 509
             ||||||||||||||||||||
Sbjct: 61061 gatcctttctttttatagca 61080
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>gb|AF466200.2| Sorghum bicolor putative protein kinase gene, partial cds; putative
             Cf-2, fertilization-independent endosperm proteins,
             hypothetical protein, putative non-LTR retroelement
             reverse transcriptase, OCL5 protein, tryptophan synthase
             beta-subunit, hypothetical proteins, putative AP
             endonuclease, putative RNA polymerase II complex component
             SRB7, putative beta-1,3-glucanase, hypothetical protein,
             TNP2-like protein, hypothetical protein, putative
             phosphate/phosphoenolpyruvate translocator, putative
             protein, hypothetical proteins, putative
             galactosyltransferase family, hypothetical protein,
             putative cytochrome P450 family, putative lipid transfer
             protein, putative photoreceptor-interacting protein, and
             hypothetical protein genes, complete cds; and hypothetical
             protein gene, partial cds
          Length = 202197

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   tactgccaagtatagcaaag 180
             ||||||||||||||||||||
Sbjct: 83167 tactgccaagtatagcaaag 83186
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>gb|AF160182.1|F17I23 Arabidopsis thaliana BAC F17I23
          Length = 134784

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 484    gtgtttgatcctttcttttt 503
              ||||||||||||||||||||
Sbjct: 107752 gtgtttgatcctttcttttt 107733
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>emb|AL954846.32| Zebrafish DNA sequence from clone CH211-279C3 in linkage group 7,
              complete sequence
          Length = 167377

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    aaaccctctggttttatgtg 219
              ||||||||||||||||||||
Sbjct: 150876 aaaccctctggttttatgtg 150895
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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    actcctctaatttccatgtc 415
              ||||||||||||||||||||
Sbjct: 919649 actcctctaatttccatgtc 919630
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>gb|AC167036.6| Mus musculus chromosome 1, clone RP23-76P9, complete sequence
          Length = 250160

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 450   aactctggatcactctttat 469
             ||||||||||||||||||||
Sbjct: 33360 aactctggatcactctttat 33379


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,955,784
Number of Sequences: 3902068
Number of extensions: 5955784
Number of successful extensions: 144543
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144330
Number of HSP's gapped (non-prelim): 210
length of query: 671
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 648
effective length of database: 17,143,297,704
effective search space: 11108856912192
effective search space used: 11108856912192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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