ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14l22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_550034.1| Oryza sativa (japonica cultivar-group), mRNA 283 4e-73
2dbj|AK101232.1| Oryza sativa (japonica cultivar-group) cDNA clon... 268 2e-68
3ref|XM_550033.1| Oryza sativa (japonica cultivar-group), mRNA 244 3e-61
4dbj|AK101585.1| Oryza sativa (japonica cultivar-group) cDNA clon... 244 3e-61
5gb|AY111632.1| Zea mays CL2746_1 mRNA sequence 159 1e-35
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
7dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
8gb|AC079281.4|AC079281 Arabidopsis thaliana chromosome 1 BAC F2J... 56 2e-04
9gb|AC079374.4|AC079374 Arabidopsis thaliana chromosome 1 BAC F4F... 56 2e-04
10ref|NM_102348.2| Arabidopsis thaliana catalytic AT1G25375 mRNA, ... 54 6e-04
11gb|BT000555.1| Arabidopsis thaliana unknown protein (At1g25370/... 54 6e-04
12gb|AY057608.1| Arabidopsis thaliana At1g25370/F4F7_22 mRNA, comp... 54 6e-04
13emb|BX816080.1|CNS0AAS5 Arabidopsis thaliana Full-length cDNA Co... 54 6e-04
14dbj|AK176238.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 54 6e-04
15dbj|AK175321.1| Arabidopsis thaliana mRNA, complete cds, clone: ... 54 6e-04
16ref|XM_462375.1| Debaryomyces hansenii CBS767 hypothetical prote... 44 0.59
17emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 44 0.59
18emb|AJ250838.2|GGA250838 Gallus gallus IL-6 gene for interleukin... 44 0.59
19gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL... 42 2.3
20ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA... 42 2.3
21gb|AC116353.2| Homo sapiens chromosome 5 clone RP11-515C16, comp... 42 2.3
22emb|BX248322.3| Zebrafish DNA sequence from clone CH211-219O4 in... 42 2.3
23dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 42 2.3
24gb|AC108425.9| Mus musculus chromosome 1, clone RP23-119I1, comp... 40 9.2
25gb|AC133600.2| Mus musculus BAC clone RP24-399N24 from chromosom... 40 9.2
26gb|AC102115.11| Mus musculus chromosome 3, clone RP23-145A18, co... 40 9.2
27gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosom... 40 9.2
28gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 9.2
29gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 9.2
30emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in... 40 9.2
31gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 9.2
32emb|AL139101.13| Human DNA sequence from clone RP3-414L4 on chro... 40 9.2
33emb|CR626869.7| Zebrafish DNA sequence from clone CH211-145O7 in... 40 9.2
34gb|AC002340.3| Arabidopsis thaliana chromosome 2 BAC T11J7 genom... 40 9.2
35gb|AC036144.7| Homo sapiens chromosome 8, clone RP11-293L6, comp... 40 9.2
36gb|AC016031.6| Homo sapiens, clone RP11-12J8, complete sequence 40 9.2
37dbj|AK032898.1| Mus musculus 12 days embryo male wolffian duct i... 40 9.2
38emb|BX323810.8| Zebrafish DNA sequence from clone CH211-153K16 i... 40 9.2
39emb|AL954670.11| Zebrafish DNA sequence from clone CH211-274J15 ... 40 9.2
40dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 9.2
41emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid compl... 40 9.2
42gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome... 40 9.2
43dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 9.2 
>ref|XM_550034.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1714

 Score =  283 bits (143), Expect = 4e-73
 Identities = 269/311 (86%)
 Strand = Plus / Minus

                                                                        
Query: 361  aattcatcgcaacttccactgaacatttctaaggagaaatccttgggaagtttatcttga 420
            |||||||| |||||||   ||||||||| ||||||||||||||| || ||||||| ||| 
Sbjct: 1502 aattcatcacaacttcggttgaacatttgtaaggagaaatccttaggtagtttattttgg 1443

                                                                        
Query: 421  gagttcagatgatcaacatgaaggcgaacattaaatgatgcaggaacccataatttcctg 480
            |||||||||||||||||||||||||||||||| || || ||||||| |||||||||||| 
Sbjct: 1442 gagttcagatgatcaacatgaaggcgaacattgaaagaagcaggaatccataatttccta 1383

                                                                        
Query: 481  tctacatcacaataagtcttcgaaactatatcaaacaaagtttgagcaccattctctatg 540
            |||||||||  |||||| || |||||||| ||||||| |||  |||| ||||||||||| 
Sbjct: 1382 tctacatcagcataagtttttgaaactatgtcaaacagagtccgagccccattctctata 1323

                                                                        
Query: 541  gattgcagaatggaagcttctctagcctttcgattcttgagatatccacaaagcatatgc 600
            || || ||||||||  |||| || ||| |||| | | |||| ||||||||||||||||| 
Sbjct: 1322 gactgtagaatggacacttcccttgcccttcggtgcctgaggtatccacaaagcatatgt 1263

                                                                        
Query: 601  ttgggccataggttgattcttccatgcattggaattagcacatgtggcgacatctccaag 660
            ||||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||||
Sbjct: 1262 ttgggccataggttgattcttccatgcattggaatcagcacgtgcggtgacatgtccaag 1203

                       
Query: 661  aatttgtatgt 671
            || ||||||||
Sbjct: 1202 aaattgtatgt 1192
to top
>dbj|AK101232.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031J06, full
            insert sequence
          Length = 1712

 Score =  268 bits (135), Expect = 2e-68
 Identities = 268/311 (86%), Gaps = 1/311 (0%)
 Strand = Plus / Minus

                                                                        
Query: 361  aattcatcgcaacttccactgaacatttctaaggagaaatccttgggaagtttatcttga 420
            |||||||| |||||||   ||||||||| ||||||||||||||| || ||||||| ||| 
Sbjct: 1500 aattcatcacaacttcggttgaacatttgtaaggagaaatccttaggtagtttattttgg 1441

                                                                        
Query: 421  gagttcagatgatcaacatgaaggcgaacattaaatgatgcaggaacccataatttcctg 480
            ||||||||||||||||||||| |||||||||| || || ||||||| |||||||||||| 
Sbjct: 1440 gagttcagatgatcaacatga-ggcgaacattgaaagaagcaggaatccataatttccta 1382

                                                                        
Query: 481  tctacatcacaataagtcttcgaaactatatcaaacaaagtttgagcaccattctctatg 540
            |||||||||  |||||| || |||||||| ||||||| |||  |||| ||||||||||| 
Sbjct: 1381 tctacatcagcataagtttttgaaactatgtcaaacagagtccgagccccattctctata 1322

                                                                        
Query: 541  gattgcagaatggaagcttctctagcctttcgattcttgagatatccacaaagcatatgc 600
            || || ||||||||  |||| || ||| |||| | | |||| ||||||||||||||||| 
Sbjct: 1321 gactgtagaatggacacttcccttgcccttcggtgcctgaggtatccacaaagcatatgt 1262

                                                                        
Query: 601  ttgggccataggttgattcttccatgcattggaattagcacatgtggcgacatctccaag 660
            ||||||||||||||||||||||||||||||||||| ||||| || || ||||| ||||||
Sbjct: 1261 ttgggccataggttgattcttccatgcattggaatcagcacgtgcggtgacatgtccaag 1202

                       
Query: 661  aatttgtatgt 671
            || ||||||||
Sbjct: 1201 aaattgtatgt 1191
to top
>ref|XM_550033.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1899

 Score =  244 bits (123), Expect = 3e-61
 Identities = 228/263 (86%)
 Strand = Plus / Minus

                                                                        
Query: 409  agtttatcttgagagttcagatgatcaacatgaaggcgaacattaaatgatgcaggaacc 468
            ||||||| ||| |||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct: 1488 agtttattttgggagttcagatgatcaacatgaaggcgaacattgaaagaagcaggaatc 1429

                                                                        
Query: 469  cataatttcctgtctacatcacaataagtcttcgaaactatatcaaacaaagtttgagca 528
            ||||||||||| |||||||||  |||||| || |||||||| ||||||| |||  |||| 
Sbjct: 1428 cataatttcctatctacatcagcataagtttttgaaactatgtcaaacagagtccgagcc 1369

                                                                        
Query: 529  ccattctctatggattgcagaatggaagcttctctagcctttcgattcttgagatatcca 588
            ||||||||||| || || ||||||||  |||| || ||| |||| | | |||| ||||||
Sbjct: 1368 ccattctctatagactgtagaatggacacttcccttgcccttcggtgcctgaggtatcca 1309

                                                                        
Query: 589  caaagcatatgcttgggccataggttgattcttccatgcattggaattagcacatgtggc 648
            ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || || 
Sbjct: 1308 caaagcatatgtttgggccataggttgattcttccatgcattggaatcagcacgtgcggt 1249

                                   
Query: 649  gacatctccaagaatttgtatgt 671
            ||||| |||||||| ||||||||
Sbjct: 1248 gacatgtccaagaaattgtatgt 1226
to top
>dbj|AK101585.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033050P03, full
            insert sequence
          Length = 1898

 Score =  244 bits (123), Expect = 3e-61
 Identities = 228/263 (86%)
 Strand = Plus / Minus

                                                                        
Query: 409  agtttatcttgagagttcagatgatcaacatgaaggcgaacattaaatgatgcaggaacc 468
            ||||||| ||| |||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct: 1487 agtttattttgggagttcagatgatcaacatgaaggcgaacattgaaagaagcaggaatc 1428

                                                                        
Query: 469  cataatttcctgtctacatcacaataagtcttcgaaactatatcaaacaaagtttgagca 528
            ||||||||||| |||||||||  |||||| || |||||||| ||||||| |||  |||| 
Sbjct: 1427 cataatttcctatctacatcagcataagtttttgaaactatgtcaaacagagtccgagcc 1368

                                                                        
Query: 529  ccattctctatggattgcagaatggaagcttctctagcctttcgattcttgagatatcca 588
            ||||||||||| || || ||||||||  |||| || ||| |||| | | |||| ||||||
Sbjct: 1367 ccattctctatagactgtagaatggacacttcccttgcccttcggtgcctgaggtatcca 1308

                                                                        
Query: 589  caaagcatatgcttgggccataggttgattcttccatgcattggaattagcacatgtggc 648
            ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || || 
Sbjct: 1307 caaagcatatgtttgggccataggttgattcttccatgcattggaatcagcacgtgcggt 1248

                                   
Query: 649  gacatctccaagaatttgtatgt 671
            ||||| |||||||| ||||||||
Sbjct: 1247 gacatgtccaagaaattgtatgt 1225
to top
>gb|AY111632.1| Zea mays CL2746_1 mRNA sequence
          Length = 557

 Score =  159 bits (80), Expect = 1e-35
 Identities = 140/160 (87%)
 Strand = Plus / Plus

                                                                       
Query: 352 ctagacataaattcatcgcaacttccactgaacatttctaaggagaaatccttgggaagt 411
           ||||| ||||| ||||| ||||||| |||||||||||| || |||||||||||||| | |
Sbjct: 243 ctagagataaaatcatcacaacttcgactgaacatttccaaagagaaatccttgggcaat 302

                                                                       
Query: 412 ttatcttgagagttcagatgatcaacatgaaggcgaacattaaatgatgcaggaacccat 471
           |||| | | |||||||||||||||||||||||||||||||| || || ||||||| ||| 
Sbjct: 303 ttatgtagggagttcagatgatcaacatgaaggcgaacattgaaagaagcaggaatccac 362

                                                   
Query: 472 aatttcctgtctacatcacaataagtcttcgaaactatat 511
           || |||||||| |||||||  |||||||||||||||||||
Sbjct: 363 aacttcctgtcaacatcactgtaagtcttcgaaactatat 402



 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 86/98 (87%)
 Strand = Plus / Plus

                                                                       
Query: 569 ttcgattcttgagatatccacaaagcatatgcttgggccataggttgattcttccatgca 628
           |||||||| |||| |||||||||||||||| |||||||||||| || || ||||||||||
Sbjct: 460 ttcgattcctgaggtatccacaaagcatatacttgggccatagattaatccttccatgca 519

                                                 
Query: 629 ttggaattagcacatgtggcgacatctccaagaatttg 666
           |||||||||  ||||| || |||  |||||||||||||
Sbjct: 520 ttggaattaatacatgcggtgaccactccaagaatttg 557
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  139 bits (70), Expect = 1e-29
 Identities = 127/146 (86%)
 Strand = Plus / Minus

                                                                           
Query: 409     agtttatcttgagagttcagatgatcaacatgaaggcgaacattaaatgatgcaggaacc 468
               ||||||| ||| |||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct: 1853767 agtttattttgggagttcagatgatcaacatgaaggcgaacattgaaagaagcaggaatc 1853708

                                                                           
Query: 469     cataatttcctgtctacatcacaataagtcttcgaaactatatcaaacaaagtttgagca 528
               ||||||||||| |||||||||  |||||| || |||||||| ||||||| |||  |||| 
Sbjct: 1853707 cataatttcctatctacatcagcataagtttttgaaactatgtcaaacagagtccgagcc 1853648

                                         
Query: 529     ccattctctatggattgcagaatgga 554
               ||||||||||| || || ||||||||
Sbjct: 1853647 ccattctctatagactgtagaatgga 1853622



 Score =  123 bits (62), Expect = 8e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                           
Query: 578     tgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaatta 637
               |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 1853319 tgaggtatccacaaagcatatgtttgggccataggttgattcttccatgcattggaatca 1853260

                                                 
Query: 638     gcacatgtggcgacatctccaagaatttgtatgt 671
               |||| || || ||||| |||||||| ||||||||
Sbjct: 1853259 gcacgtgcggtgacatgtccaagaaattgtatgt 1853226



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                          
Query: 361     aattcatcgcaacttccactgaacatttctaaggagaaatcct 403
               |||||||| |||||||   ||||||||| ||||||||||||||
Sbjct: 1854198 aattcatcacaacttcggttgaacatttgtaaggagaaatcct 1854156
to top
>dbj|AP003214.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0083M16
          Length = 179428

 Score =  139 bits (70), Expect = 1e-29
 Identities = 127/146 (86%)
 Strand = Plus / Minus

                                                                         
Query: 409   agtttatcttgagagttcagatgatcaacatgaaggcgaacattaaatgatgcaggaacc 468
             ||||||| ||| |||||||||||||||||||||||||||||||| || || ||||||| |
Sbjct: 95149 agtttattttgggagttcagatgatcaacatgaaggcgaacattgaaagaagcaggaatc 95090

                                                                         
Query: 469   cataatttcctgtctacatcacaataagtcttcgaaactatatcaaacaaagtttgagca 528
             ||||||||||| |||||||||  |||||| || |||||||| ||||||| |||  |||| 
Sbjct: 95089 cataatttcctatctacatcagcataagtttttgaaactatgtcaaacagagtccgagcc 95030

                                       
Query: 529   ccattctctatggattgcagaatgga 554
             ||||||||||| || || ||||||||
Sbjct: 95029 ccattctctatagactgtagaatgga 95004



 Score =  123 bits (62), Expect = 8e-25
 Identities = 86/94 (91%)
 Strand = Plus / Minus

                                                                         
Query: 578   tgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaatta 637
             |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 94701 tgaggtatccacaaagcatatgtttgggccataggttgattcttccatgcattggaatca 94642

                                               
Query: 638   gcacatgtggcgacatctccaagaatttgtatgt 671
             |||| || || ||||| |||||||| ||||||||
Sbjct: 94641 gcacgtgcggtgacatgtccaagaaattgtatgt 94608



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                        
Query: 361   aattcatcgcaacttccactgaacatttctaaggagaaatcct 403
             |||||||| |||||||   ||||||||| ||||||||||||||
Sbjct: 95580 aattcatcacaacttcggttgaacatttgtaaggagaaatcct 95538
to top
>gb|AC079281.4|AC079281 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete
              sequence
          Length = 102540

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                          
Query: 576    cttgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaat 635
              ||||||||||||||||||||| || || ||||| |  ||||  ||||||||||| |||||
Sbjct: 100322 cttgagatatccacaaagcatgtgtttcggccacaaattgacccttccatgcatgggaat 100263

                                                  
Query: 636    tagcacatgtggcgacatctccaagaatttgtatgt 671
               | ||||| ||| || | ||||| |||||| |||||
Sbjct: 100262 caccacatttggagaaagctccaggaatttatatgt 100227
to top
>gb|AC079374.4|AC079374 Arabidopsis thaliana chromosome 1 BAC F4F7 genomic sequence, complete
            sequence
          Length = 89690

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 79/96 (82%)
 Strand = Plus / Minus

                                                                        
Query: 576  cttgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaat 635
            ||||||||||||||||||||| || || ||||| |  ||||  ||||||||||| |||||
Sbjct: 5703 cttgagatatccacaaagcatgtgtttcggccacaaattgacccttccatgcatgggaat 5644

                                                
Query: 636  tagcacatgtggcgacatctccaagaatttgtatgt 671
             | ||||| ||| || | ||||| |||||| |||||
Sbjct: 5643 caccacatttggagaaagctccaggaatttatatgt 5608
to top
>ref|NM_102348.2| Arabidopsis thaliana catalytic AT1G25375 mRNA, complete cds
          Length = 1689

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 577  ttgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaatt 636
            |||||||||||||||||||| || || ||||| |  ||||  ||||||||||| ||||| 
Sbjct: 1248 ttgagatatccacaaagcatgtgtttcggccacaaattgacccttccatgcatgggaatc 1189

                                               
Query: 637  agcacatgtggcgacatctccaagaatttgtatgt 671
            | ||||| ||| || | ||||| |||||| |||||
Sbjct: 1188 accacatttggagaaagctccaggaatttatatgt 1154
to top
>gb|BT000555.1| Arabidopsis thaliana unknown protein  (At1g25370/F4F7_22) mRNA,
           complete cds
          Length = 1047

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                       
Query: 577 ttgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaatt 636
           |||||||||||||||||||| || || ||||| |  ||||  ||||||||||| ||||| 
Sbjct: 683 ttgagatatccacaaagcatgtgtttcggccacaaattgacccttccatgcatgggaatc 624

                                              
Query: 637 agcacatgtggcgacatctccaagaatttgtatgt 671
           | ||||| ||| || | ||||| |||||| |||||
Sbjct: 623 accacatttggagaaagctccaggaatttatatgt 589
to top
>gb|AY057608.1| Arabidopsis thaliana At1g25370/F4F7_22 mRNA, complete cds
          Length = 1689

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 577  ttgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaatt 636
            |||||||||||||||||||| || || ||||| |  ||||  ||||||||||| ||||| 
Sbjct: 1247 ttgagatatccacaaagcatgtgtttcggccacaaattgacccttccatgcatgggaatc 1188

                                               
Query: 637  agcacatgtggcgacatctccaagaatttgtatgt 671
            | ||||| ||| || | ||||| |||||| |||||
Sbjct: 1187 accacatttggagaaagctccaggaatttatatgt 1153
to top
>emb|BX816080.1|CNS0AAS5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH27ZA05 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1639

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 577  ttgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaatt 636
            |||||||||||||||||||| || || ||||| |  ||||  ||||||||||| ||||| 
Sbjct: 1226 ttgagatatccacaaagcatgtgtttcggccacaaattgacccttccatgcatgggaatc 1167

                                               
Query: 637  agcacatgtggcgacatctccaagaatttgtatgt 671
            | ||||| ||| || | ||||| |||||| |||||
Sbjct: 1166 accacatttggagaaagctccaggaatttatatgt 1132
to top
>dbj|AK176238.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-12-L14
          Length = 1803

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 577  ttgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaatt 636
            |||||||||||||||||||| || || ||||| |  ||||  ||||||||||| ||||| 
Sbjct: 1303 ttgagatatccacaaagcatgtgtttcggccacaaattgacccttccatgcatgggaatc 1244

                                               
Query: 637  agcacatgtggcgacatctccaagaatttgtatgt 671
            | ||||| ||| || | ||||| |||||| |||||
Sbjct: 1243 accacatttggagaaagctccaggaatttatatgt 1209
to top
>dbj|AK175321.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-76-G12
          Length = 1730

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 78/95 (82%)
 Strand = Plus / Minus

                                                                        
Query: 577  ttgagatatccacaaagcatatgcttgggccataggttgattcttccatgcattggaatt 636
            |||||||||||||||||||| || || ||||| |  ||||  ||||||||||| ||||| 
Sbjct: 1238 ttgagatatccacaaagcatgtgtttcggccacaaattgacccttccatgcatgggaatc 1179

                                               
Query: 637  agcacatgtggcgacatctccaagaatttgtatgt 671
            | ||||| ||| || | ||||| |||||| |||||
Sbjct: 1178 accacatttggagaaagctccaggaatttatatgt 1144
to top
>ref|XM_462375.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G20427g)
            partial mRNA
          Length = 2931

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 498  cttcgaaactatatcaaacaaa 519
            ||||||||||||||||||||||
Sbjct: 2070 cttcgaaactatatcaaacaaa 2049
to top
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
               hansenii
          Length = 2051428

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 498     cttcgaaactatatcaaacaaa 519
               ||||||||||||||||||||||
Sbjct: 1566431 cttcgaaactatatcaaacaaa 1566410
to top
>emb|AJ250838.2|GGA250838 Gallus gallus IL-6 gene for interleukin-6 precursor
          Length = 3245

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 543  ttgcagaatggaagcttctcta 564
            ||||||||||||||||||||||
Sbjct: 2246 ttgcagaatggaagcttctcta 2267
to top
>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete
              sequence
          Length = 157970

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 21     ctcctgtgttgtgtgcataca 41
              |||||||||||||||||||||
Sbjct: 140640 ctcctgtgttgtgtgcataca 140620
to top
>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5
          Length = 297736

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    ctcctgtgttgtgtgcataca 41
             |||||||||||||||||||||
Sbjct: 17331 ctcctgtgttgtgtgcataca 17351
to top
>gb|AC116353.2| Homo sapiens chromosome 5 clone RP11-515C16, complete sequence
          Length = 220535

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     ctcctgtgttgtgtgcataca 41
              |||||||||||||||||||||
Sbjct: 207106 ctcctgtgttgtgtgcataca 207126
to top
>emb|BX248322.3| Zebrafish DNA sequence from clone CH211-219O4 in linkage group 13,
              complete sequence
          Length = 109740

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 279    cccaccaaaatatgaaatgtg 299
              |||||||||||||||||||||
Sbjct: 101824 cccaccaaaatatgaaatgtg 101844
to top
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 116     tgtacatgggattggggatta 136
               |||||||||||||||||||||
Sbjct: 5330531 tgtacatgggattggggatta 5330551
to top
>gb|AC108425.9| Mus musculus chromosome 1, clone RP23-119I1, complete sequence
          Length = 187230

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 406   ggaagtttatcttgagagtt 425
             ||||||||||||||||||||
Sbjct: 13633 ggaagtttatcttgagagtt 13614
to top
>gb|AC133600.2| Mus musculus BAC clone RP24-399N24 from chromosome 3, complete sequence
          Length = 197428

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 403   ttgggaagtttatcttgaga 422
             ||||||||||||||||||||
Sbjct: 95685 ttgggaagtttatcttgaga 95666
to top
>gb|AC102115.11| Mus musculus chromosome 3, clone RP23-145A18, complete sequence
          Length = 184436

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    aagtcggtcactgctgcagg 351
              ||||||||||||||||||||
Sbjct: 148810 aagtcggtcactgctgcagg 148791
to top
>gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosome 1, complete sequence
          Length = 177383

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 406   ggaagtttatcttgagagtt 425
             ||||||||||||||||||||
Sbjct: 56134 ggaagtttatcttgagagtt 56153
to top
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 116     tgtacatgggattggggatt 135
               ||||||||||||||||||||
Sbjct: 1689701 tgtacatgggattggggatt 1689720
to top
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    agaccaccggcggcaagggc 225
              ||||||||||||||||||||
Sbjct: 395158 agaccaccggcggcaagggc 395139
to top
>emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in linkage group 3,
             complete sequence
          Length = 147391

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aaatatgcaatcatgaacag 75
             ||||||||||||||||||||
Sbjct: 48746 aaatatgcaatcatgaacag 48765
to top
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    agaccaccggcggcaagggc 225
              ||||||||||||||||||||
Sbjct: 493977 agaccaccggcggcaagggc 493958
to top
>emb|AL139101.13| Human DNA sequence from clone RP3-414L4 on chromosome 6 Contains the 3'
             end of the TIAM2 gene for T-cell lymphoma invasion and
             metastasis 2 (SIF and Tiam 1-like exchange factor (STEF)),
             the CLDN20 gene for claudin 20, the TFB1M gene for
             transcription factor B1, mitochondrial (CGI-75 protein
             homolog of yeast mitochondrial transcription factor BCGI75
             (mtTFB, CGI-75)), the 5' end of a novel gene and two CpG
             islands, complete sequence
          Length = 116256

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 464   gaacccataatttcctgtctacat 487
             ||||||| ||||||||||||||||
Sbjct: 12160 gaacccaaaatttcctgtctacat 12137
to top
>emb|CR626869.7| Zebrafish DNA sequence from clone CH211-145O7 in linkage group 14,
              complete sequence
          Length = 130128

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 494    aagtcttcgaaactatatca 513
              ||||||||||||||||||||
Sbjct: 130119 aagtcttcgaaactatatca 130100
to top
>gb|AC002340.3| Arabidopsis thaliana chromosome 2 BAC T11J7 genomic sequence, complete
             sequence
          Length = 79574

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 503   aaactatatcaaacaaagtt 522
             ||||||||||||||||||||
Sbjct: 43180 aaactatatcaaacaaagtt 43161
to top
>gb|AC036144.7| Homo sapiens chromosome 8, clone RP11-293L6, complete sequence
          Length = 127270

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   caggctagacataaattcat 367
             ||||||||||||||||||||
Sbjct: 30164 caggctagacataaattcat 30183
to top
>gb|AC016031.6| Homo sapiens, clone RP11-12J8, complete sequence
          Length = 139690

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   caggctagacataaattcat 367
             ||||||||||||||||||||
Sbjct: 92280 caggctagacataaattcat 92299
to top
>dbj|AK032898.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
            region cDNA, RIKEN full-length enriched library,
            clone:6720469N11 product:unclassifiable, full insert
            sequence
          Length = 3866

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 332  aagtcggtcactgctgcagg 351
            ||||||||||||||||||||
Sbjct: 1207 aagtcggtcactgctgcagg 1188
to top
>emb|BX323810.8| Zebrafish DNA sequence from clone CH211-153K16 in linkage group 14,
              complete sequence
          Length = 166625

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 494    aagtcttcgaaactatatca 513
              ||||||||||||||||||||
Sbjct: 164635 aagtcttcgaaactatatca 164654
to top
>emb|AL954670.11| Zebrafish DNA sequence from clone CH211-274J15 in linkage group 10,
              complete sequence
          Length = 148765

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 503    aaactatatcaaacaaagtt 522
              ||||||||||||||||||||
Sbjct: 106806 aaactatatcaaacaaagtt 106787
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     agaccaccggcggcaagggc 225
               ||||||||||||||||||||
Sbjct: 7468769 agaccaccggcggcaagggc 7468750
to top
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 207    gaccaccggcggcaagggca 226
              ||||||||||||||||||||
Sbjct: 966797 gaccaccggcggcaagggca 966778
to top
>gb|AC164611.3| Mus musculus BAC clone RP23-421C2 from chromosome 8, complete sequence
          Length = 188068

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 371   aacttccactgaacatttct 390
             ||||||||||||||||||||
Sbjct: 87358 aacttccactgaacatttct 87377
to top
>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056,
             complete sequence
          Length = 102883

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 647   gcgacatctccaagaatttg 666
             ||||||||||||||||||||
Sbjct: 46063 gcgacatctccaagaatttg 46044


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,571,199
Number of Sequences: 3902068
Number of extensions: 5571199
Number of successful extensions: 96279
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96033
Number of HSP's gapped (non-prelim): 245
length of query: 676
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 653
effective length of database: 17,143,297,704
effective search space: 11194573400712
effective search space used: 11194573400712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top