| Clone Name | rbags15a17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY106269.1| Zea mays PCO138212 mRNA sequence Length = 1343 Score = 414 bits (209), Expect = e-112 Identities = 321/359 (89%) Strand = Plus / Minus Query: 195 cttcttcacaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatcc 254 |||||||||||||| ||||| || |||||||| ||||||||||||||||||| ||||||| Sbjct: 1223 cttcttcacaggaacggagggagaatcacccaccggcgagggtacttgggcctcccatcc 1164 Query: 255 ttcccgtcgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatg 314 || ||||| ||||||||| |||| ||| ||||||| || ||||||||||||||||||||| Sbjct: 1163 ttgccgtcaaacagcttcttcagacggctgtgcttgccgagcgcccagttggtcatgatg 1104 Query: 315 gccgccgccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccg 374 ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| ||| Sbjct: 1103 cccgccgccacgacaaggaagacgtaacctgccacggtctgtgtggcgatgttgaagccg 1044 Query: 375 agccattggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccc 434 | ||| |||||||||||||||||||| || ||||| |||||||||||||||| ||| || Sbjct: 1043 acccactggtagatctcggtggtgtaattggcgcaggtcacgatgttgaacaagaaaccg 984 Query: 435 cgtgggatctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtgg 494 || ||||||||||| |||||||||||| | |||||||||||||||| || |||||||||| Sbjct: 983 cgggggatctggtacccgccgctgccgcttgggctcctgaggttccgcagcaggatgtgg 924 Query: 495 cagtagaagtttgcgatctggcacacgaccccgatgccgaacccaatcttcatctgcag 553 ||||||||||| |||| |||||| |||||||| | || |||||||||||||||||||| Sbjct: 923 cagtagaagttcgcgacctggcagacgaccccaaaaccaaacccaatcttcatctgcag 865
>gb|BT018162.1| Zea mays clone EL01N0556D07.c mRNA sequence Length = 1165 Score = 373 bits (188), Expect = e-100 Identities = 316/358 (88%), Gaps = 1/358 (0%) Strand = Plus / Minus Query: 197 tcttcacaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatcctt 256 |||||||||||| ||||| || |||||||| ||||||||||||||||||| ||||||||| Sbjct: 1038 tcttcacaggaacggagggagaatcacccaccggcgagggtacttgggcctcccatcctt 979 Query: 257 cccgtcgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggc 316 ||||| ||||||||| |||| ||| |||| || || ||||||||||||||||||||| | Sbjct: 978 gccgtcaaacagcttcttcagacggctgtgtttgccgagcgcccagttggtcatgatgcc 919 Query: 317 cgccgccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgag 376 ||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||| Sbjct: 918 tgccgccacgacaaggaagacgtaacctgccacggtctgtgtggcgatgttgaagccgac 859 Query: 377 ccattggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccg 436 ||| |||||||||||||||||||| || ||||| |||||||||||||||| ||| || || Sbjct: 858 ccactggtagatctcggtggtgtaattggcgcaggtcacgatgttgaacaagaacccgcg 799 Query: 437 tgggatctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtggca 496 ||||||||||| || ||||||||| | |||||||||||||||| || |||||||||||| Sbjct: 798 ggggatctggtaccctccgctgccgcttgggctcctgaggttccgcagcaggatgtggca 739 Query: 497 gtagaagtttgcgatctggcacacgacccc-gatgccgaacccaatcttcatctgcag 553 ||||||||| |||| |||||| |||||||| | || |||||||||||||||||||| Sbjct: 738 gtagaagttcgcgacctggcagacgaccccaaaaaccaaacccaatcttcatctgcag 681
>ref|XM_550155.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1226 Score = 256 bits (129), Expect = 7e-65 Identities = 295/351 (84%) Strand = Plus / Minus Query: 202 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 1017 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 958 Query: 262 cgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccg 321 |||||| |||| | || ||| |||||||||||| ||||||||||||||||| ||| | Sbjct: 957 cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 898 Query: 322 ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 381 |||| ||||||||| |||||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct: 897 ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 838 Query: 382 ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 441 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || | Sbjct: 837 ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 778 Query: 442 tctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtggcagtaga 501 |||| ||||| ||| | || |||| || ||||||||||||| |||||| ||||| || | Sbjct: 777 tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 718 Query: 502 agtttgcgatctggcacacgaccccgatgccgaacccaatcttcatctgca 552 ||||||| || ||||| | | ||| | || ||||||||||||||||||| Sbjct: 717 agtttgcaatttggcagagaatcccaaatccaaacccaatcttcatctgca 667
>dbj|AK066325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062L06, full insert sequence Length = 3501 Score = 256 bits (129), Expect = 7e-65 Identities = 295/351 (84%) Strand = Plus / Minus Query: 202 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 3206 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 3147 Query: 262 cgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccg 321 |||||| |||| | || ||| |||||||||||| ||||||||||||||||| ||| | Sbjct: 3146 cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 3087 Query: 322 ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 381 |||| ||||||||| |||||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct: 3086 ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 3027 Query: 382 ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 441 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || | Sbjct: 3026 ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 2967 Query: 442 tctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtggcagtaga 501 |||| ||||| ||| | || |||| || ||||||||||||| |||||| ||||| || | Sbjct: 2966 tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 2907 Query: 502 agtttgcgatctggcacacgaccccgatgccgaacccaatcttcatctgca 552 ||||||| || ||||| | | ||| | || ||||||||||||||||||| Sbjct: 2906 agtttgcaatttggcagagaatcccaaatccaaacccaatcttcatctgca 2856
>dbj|AK060948.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F04, full insert sequence Length = 1221 Score = 256 bits (129), Expect = 7e-65 Identities = 295/351 (84%) Strand = Plus / Minus Query: 202 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 1012 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 953 Query: 262 cgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccg 321 |||||| |||| | || ||| |||||||||||| ||||||||||||||||| ||| | Sbjct: 952 cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 893 Query: 322 ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 381 |||| ||||||||| |||||| ||||| ||||| ||||| ||||||||||| ||||||| Sbjct: 892 ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 833 Query: 382 ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 441 |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || | Sbjct: 832 ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 773 Query: 442 tctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtggcagtaga 501 |||| ||||| ||| | || |||| || ||||||||||||| |||||| ||||| || | Sbjct: 772 tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 713 Query: 502 agtttgcgatctggcacacgaccccgatgccgaacccaatcttcatctgca 552 ||||||| || ||||| | | ||| | || ||||||||||||||||||| Sbjct: 712 agtttgcaatttggcagagaatcccaaatccaaacccaatcttcatctgca 662
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 210 bits (106), Expect = 4e-51 Identities = 228/269 (84%) Strand = Plus / Plus Query: 284 gtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacgtaacc 343 |||||||||||| ||||||||||||||||| ||| ||||| ||||||||| |||||| Sbjct: 2707086 gtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatgtaacc 2707145 Query: 344 cgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtgtagtt 403 ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 2707146 tgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggtatagtt 2707205 Query: 404 tgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctgccggt 463 |||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | || | Sbjct: 2707206 tgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgttaccact 2707265 Query: 464 cgggctcctgaggttcctcancaggatgtggcagtagaagtttgcgatctggcacacgac 523 ||| || ||||||||||||| |||||| ||||| || |||||||| || ||||| | | Sbjct: 2707266 cggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggcagagaat 2707325 Query: 524 cccgatgccgaacccaatcttcatctgca 552 ||| | || ||||||||||||||||||| Sbjct: 2707326 cccaaatccaaacccaatcttcatctgca 2707354 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 202 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 2706918 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 2706977 Query: 262 cgaaca 267 |||||| Sbjct: 2706978 cgaaca 2706983
>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434B04 Length = 167029 Score = 210 bits (106), Expect = 4e-51 Identities = 228/269 (84%) Strand = Plus / Plus Query: 284 gtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacgtaacc 343 |||||||||||| ||||||||||||||||| ||| ||||| ||||||||| |||||| Sbjct: 156861 gtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatgtaacc 156920 Query: 344 cgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtgtagtt 403 ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 156921 tgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggtatagtt 156980 Query: 404 tgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctgccggt 463 |||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | || | Sbjct: 156981 tgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgttaccact 157040 Query: 464 cgggctcctgaggttcctcancaggatgtggcagtagaagtttgcgatctggcacacgac 523 ||| || ||||||||||||| |||||| ||||| || |||||||| || ||||| | | Sbjct: 157041 cggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggcagagaat 157100 Query: 524 cccgatgccgaacccaatcttcatctgca 552 ||| | || ||||||||||||||||||| Sbjct: 157101 cccaaatccaaacccaatcttcatctgca 157129 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 202 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 156693 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 156752 Query: 262 cgaaca 267 |||||| Sbjct: 156753 cgaaca 156758
>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0009G03 Length = 163526 Score = 210 bits (106), Expect = 4e-51 Identities = 228/269 (84%) Strand = Plus / Plus Query: 284 gtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacgtaacc 343 |||||||||||| ||||||||||||||||| ||| ||||| ||||||||| |||||| Sbjct: 12763 gtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatgtaacc 12822 Query: 344 cgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtgtagtt 403 ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||| Sbjct: 12823 tgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggtatagtt 12882 Query: 404 tgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctgccggt 463 |||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | || | Sbjct: 12883 tgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgttaccact 12942 Query: 464 cgggctcctgaggttcctcancaggatgtggcagtagaagtttgcgatctggcacacgac 523 ||| || ||||||||||||| |||||| ||||| || |||||||| || ||||| | | Sbjct: 12943 cggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggcagagaat 13002 Query: 524 cccgatgccgaacccaatcttcatctgca 552 ||| | || ||||||||||||||||||| Sbjct: 13003 cccaaatccaaacccaatcttcatctgca 13031 Score = 60.0 bits (30), Expect = 8e-06 Identities = 57/66 (86%) Strand = Plus / Plus Query: 202 acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261 |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct: 12595 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 12654 Query: 262 cgaaca 267 |||||| Sbjct: 12655 cgaaca 12660
>ref|NM_115394.2| Arabidopsis thaliana CER10/ECR; 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase AT3G55360 (CER10/ECR) mRNA, complete cds Length = 1319 Score = 89.7 bits (45), Expect = 9e-15 Identities = 197/248 (79%) Strand = Plus / Minus Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 1059 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 1000 Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323 || | ||| ||||| ||| ||||||||||||| ||||| || |||||||| || || Sbjct: 999 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 940 Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 939 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 880 Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 879 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 820 Query: 444 tggtagcc 451 |||||||| Sbjct: 819 tggtagcc 812
>gb|BT012066.1| Arabidopsis thaliana At3g55360 mRNA sequence Length = 930 Score = 89.7 bits (45), Expect = 9e-15 Identities = 197/248 (79%) Strand = Plus / Minus Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 926 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 867 Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323 || | ||| ||||| ||| ||||||||||||| ||||| || |||||||| || || Sbjct: 866 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 807 Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 806 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 747 Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 746 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 687 Query: 444 tggtagcc 451 |||||||| Sbjct: 686 tggtagcc 679
>gb|AY081583.1| Arabidopsis thaliana glycoprotein-like (T22E16.2) mRNA, complete cds Length = 1134 Score = 89.7 bits (45), Expect = 9e-15 Identities = 197/248 (79%) Strand = Plus / Minus Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 929 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 870 Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323 || | ||| ||||| ||| ||||||||||||| ||||| || |||||||| || || Sbjct: 869 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 810 Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 809 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 750 Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 749 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 690 Query: 444 tggtagcc 451 |||||||| Sbjct: 689 tggtagcc 682
>gb|AY065136.1| Arabidopsis thaliana glycoprotein-like (T22E16.2) mRNA, complete cds Length = 1218 Score = 89.7 bits (45), Expect = 9e-15 Identities = 197/248 (79%) Strand = Plus / Minus Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 964 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 905 Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323 || | ||| ||||| ||| ||||||||||||| ||||| || |||||||| || || Sbjct: 904 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 845 Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 844 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 785 Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 784 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 725 Query: 444 tggtagcc 451 |||||||| Sbjct: 724 tggtagcc 717
>emb|BX826269.1|CNS0A4Y2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL95ZE06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1098 Score = 89.7 bits (45), Expect = 9e-15 Identities = 197/248 (79%) Strand = Plus / Minus Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 961 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 902 Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323 || | ||| ||||| ||| ||||||||||||| ||||| || |||||||| || || Sbjct: 901 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 842 Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383 || || ||||| || || || || | |||||| || ||||||||||| || ||||||||| Sbjct: 841 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 782 Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 781 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 722 Query: 444 tggtagcc 451 |||||||| Sbjct: 721 tggtagcc 714
>emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16 Length = 103240 Score = 87.7 bits (44), Expect = 4e-14 Identities = 145/179 (81%) Strand = Plus / Plus Query: 273 ctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgccacggcaagg 332 ||||| ||| ||||||||||||| ||||| || |||||||| || || || || ||| Sbjct: 3825 ctcagacggctgtgctttccaagagcccaattagtcatgattagagcagcaacagcgagg 3884 Query: 333 aagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattggtagatctcg 392 || || || || || | |||||| || ||||||||||| || ||||||||||| |||||| Sbjct: 3885 aaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattggtaaatctcg 3944 Query: 393 gtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagcc 451 || ||||| || || ||||| || |||||||| ||||| || ||||| ||||||||||| Sbjct: 3945 gtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatctggtagcc 4003 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 204 aggaatggaggaaggatcacccatc 228 |||||||||||||| |||||||||| Sbjct: 3664 aggaatggaggaagtatcacccatc 3688
>gb|AY088452.1| Arabidopsis thaliana clone 6774 mRNA, complete sequence Length = 1311 Score = 81.8 bits (41), Expect = 2e-12 Identities = 196/248 (79%) Strand = Plus / Minus Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263 |||||||||||||| |||||||||| | || ||||| ||| ||||| || || || Sbjct: 1056 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 997 Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323 || | ||| ||||| ||| ||||||||||||| ||||| || |||||||| || || Sbjct: 996 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 937 Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383 || || ||||| || || || || | |||||| || || |||||||| || ||||||||| Sbjct: 936 acagcgaggaaaacatatcctgcaatggtctgagtagcaatgttgaatcctagccattgg 877 Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443 || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct: 876 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 817 Query: 444 tggtagcc 451 |||||||| Sbjct: 816 tggtagcc 809
>emb|AJ515556.1|CAR515556 Cicer arietinum mRNA for steroid 5-alpha reductase (sr5a gene) Length = 1336 Score = 46.1 bits (23), Expect = 0.12 Identities = 29/31 (93%) Strand = Plus / Minus Query: 283 tgtgctttccaagcgcccagttggtcatgat 313 |||||||| |||| ||||||||||||||||| Sbjct: 960 tgtgctttgcaagagcccagttggtcatgat 930
>gb|AC119252.10| Mus musculus chromosome 8, clone RP24-279M13, complete sequence Length = 176594 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 taacaataggataagaaaata 26 ||||||||||||||||||||| Sbjct: 103027 taacaataggataagaaaata 103047
>gb|AE004700.1| Pseudomonas aeruginosa PAO1, section 261 of 529 of the complete genome Length = 16118 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 gccgccgctgccggtcgggct 469 ||||||||||||||||||||| Sbjct: 2836 gccgccgctgccggtcgggct 2816
>gb|AY946230.1| Hordeum vulgare subsp. vulgare 3' flanking sequence from Ds insertion in TNP-32B Length = 1007 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 199 ttcacaggaatggaggaagga 219 ||||||||||||||||||||| Sbjct: 167 ttcacaggaatggaggaagga 147
>gb|U48208.1|HIV1U48208 Human immunodeficiency virus type 1 clone 11 sample IV envelope glycoprotein (env) gene, C2-V5 region, partial cds Length = 660 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 agatctcggtggtgtagtttg 405 ||||||||||||||||||||| Sbjct: 619 agatctcggtggtgtagtttg 599
>gb|L36679.1|AMLUNA Amycolatopsis methanolica plasmid pMEA300 stf gene, complete cds Length = 13285 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 448 agccgccgctgccggtcgggc 468 ||||||||||||||||||||| Sbjct: 4138 agccgccgctgccggtcgggc 4118
>gb|M75151.1|RATDNA Rattus norvegicus DNA Length = 4931 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 154 aaatgttgaatctctagatac 174 ||||||||||||||||||||| Sbjct: 856 aaatgttgaatctctagatac 836
>gb|AC152117.2| Pichia stipitis clone JGIAHYZ-5A1, complete sequence Length = 34078 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 acataattgaggtttgacag 74 |||||||||||||||||||| Sbjct: 23203 acataattgaggtttgacag 23184
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccacggtctgggtggcgatg 365 |||||||||||||||||||| Sbjct: 455773 ccacggtctgggtggcgatg 455754
>ref|XM_473416.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2652 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 agccgccgctgccggtcgggctcc 471 |||||||||| ||||||||||||| Sbjct: 38 agccgccgcttccggtcgggctcc 15
>emb|CR701735.2|CNS0G4ER Tetraodon nigroviridis full-length cDNA Length = 1495 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 atgatggccgccgccacggc 328 |||||||||||||||||||| Sbjct: 896 atgatggccgccgccacggc 915
>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence Length = 127259 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 agccgccgctgccggtcgggctcc 471 |||||||||| ||||||||||||| Sbjct: 56858 agccgccgcttccggtcgggctcc 56881
>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8, complete sequence Length = 218866 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 cggtctgggtggcgatgttg 368 |||||||||||||||||||| Sbjct: 99157 cggtctgggtggcgatgttg 99176
>gb|AC093258.2| Homo sapiens chromosome 5 clone RP11-1E3, complete sequence Length = 151202 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 aacactggaacagaataaat 157 |||||||||||||||||||| Sbjct: 88947 aacactggaacagaataaat 88966
>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence Length = 211945 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 tcatgatggccgccgccacg 326 |||||||||||||||||||| Sbjct: 44879 tcatgatggccgccgccacg 44860
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 448 agccgccgctgccggtcgggctcc 471 |||||||||| ||||||||||||| Sbjct: 27532882 agccgccgcttccggtcgggctcc 27532905
>gb|AC073624.28| Homo sapiens chromosome 17, clone RP11-537K14, complete sequence Length = 145512 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 agataccagccttgcaagca 188 |||||||||||||||||||| Sbjct: 31611 agataccagccttgcaagca 31592
>gb|AC011750.8| Homo sapiens BAC clone RP11-458C9 from 2, complete sequence Length = 139166 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 aacactggaacagaataaatgttg 161 |||||||||||| ||||||||||| Sbjct: 53954 aacactggaacaaaataaatgttg 53977
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ccgccacggcaaggaagacg 338 |||||||||||||||||||| Sbjct: 2510070 ccgccacggcaaggaagacg 2510089
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 346 ccacggtctgggtggcgatg 365 |||||||||||||||||||| Sbjct: 1510673 ccacggtctgggtggcgatg 1510654
>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7, complete sequence Length = 197927 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 cggtctgggtggcgatgttg 368 |||||||||||||||||||| Sbjct: 170816 cggtctgggtggcgatgttg 170797
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 443 ctggtagccgccgctgccgg 462 |||||||||||||||||||| Sbjct: 1724509 ctggtagccgccgctgccgg 1724528
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 taacaataggataagaaaat 25 |||||||||||||||||||| Sbjct: 1069442 taacaataggataagaaaat 1069423 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,350,190 Number of Sequences: 3902068 Number of extensions: 4350190 Number of successful extensions: 82781 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82412 Number of HSP's gapped (non-prelim): 369 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)