ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15a17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY106269.1| Zea mays PCO138212 mRNA sequence 414 e-112
2gb|BT018162.1| Zea mays clone EL01N0556D07.c mRNA sequence 373 e-100
3ref|XM_550155.1| Oryza sativa (japonica cultivar-group), mRNA 256 7e-65
4dbj|AK066325.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 7e-65
5dbj|AK060948.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 7e-65
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 210 4e-51
7dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic D... 210 4e-51
8dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic D... 210 4e-51
9ref|NM_115394.2| Arabidopsis thaliana CER10/ECR; 3-oxo-5-alpha-s... 90 9e-15
10gb|BT012066.1| Arabidopsis thaliana At3g55360 mRNA sequence 90 9e-15
11gb|AY081583.1| Arabidopsis thaliana glycoprotein-like (T22E16.2)... 90 9e-15
12gb|AY065136.1| Arabidopsis thaliana glycoprotein-like (T22E16.2)... 90 9e-15
13emb|BX826269.1|CNS0A4Y2 Arabidopsis thaliana Full-length cDNA Co... 90 9e-15
14emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, B... 88 4e-14
15gb|AY088452.1| Arabidopsis thaliana clone 6774 mRNA, complete se... 82 2e-12
16emb|AJ515556.1|CAR515556 Cicer arietinum mRNA for steroid 5-alph... 46 0.12
17gb|AC119252.10| Mus musculus chromosome 8, clone RP24-279M13, co... 42 1.9
18gb|AE004700.1| Pseudomonas aeruginosa PAO1, section 261 of 529 o... 42 1.9
19gb|AY946230.1| Hordeum vulgare subsp. vulgare 3' flanking sequen... 42 1.9
20gb|U48208.1|HIV1U48208 Human immunodeficiency virus type 1 clone... 42 1.9
21gb|L36679.1|AMLUNA Amycolatopsis methanolica plasmid pMEA300 stf... 42 1.9
22gb|M75151.1|RATDNA Rattus norvegicus DNA 42 1.9
23gb|AC152117.2| Pichia stipitis clone JGIAHYZ-5A1, complete sequence 40 7.5
24gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 7.5
25ref|XM_473416.1| Oryza sativa (japonica cultivar-group), predic... 40 7.5
26emb|CR701735.2|CNS0G4ER Tetraodon nigroviridis full-length cDNA 40 7.5
27emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4,... 40 7.5
28emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in... 40 7.5
29gb|AC093258.2| Homo sapiens chromosome 5 clone RP11-1E3, complet... 40 7.5
30gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, comple... 40 7.5
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
32gb|AC073624.28| Homo sapiens chromosome 17, clone RP11-537K14, c... 40 7.5
33gb|AC011750.8| Homo sapiens BAC clone RP11-458C9 from 2, complet... 40 7.5
34dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.5
35dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.5
36emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 i... 40 7.5
37gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 7.5
38gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome 40 7.5

>gb|AY106269.1| Zea mays PCO138212 mRNA sequence
          Length = 1343

 Score =  414 bits (209), Expect = e-112
 Identities = 321/359 (89%)
 Strand = Plus / Minus

                                                                        
Query: 195  cttcttcacaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatcc 254
            |||||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||||
Sbjct: 1223 cttcttcacaggaacggagggagaatcacccaccggcgagggtacttgggcctcccatcc 1164

                                                                        
Query: 255  ttcccgtcgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatg 314
            || ||||| ||||||||| |||| ||| ||||||| || |||||||||||||||||||||
Sbjct: 1163 ttgccgtcaaacagcttcttcagacggctgtgcttgccgagcgcccagttggtcatgatg 1104

                                                                        
Query: 315  gccgccgccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccg 374
             ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct: 1103 cccgccgccacgacaaggaagacgtaacctgccacggtctgtgtggcgatgttgaagccg 1044

                                                                        
Query: 375  agccattggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccc 434
            | ||| |||||||||||||||||||| || ||||| |||||||||||||||| ||| || 
Sbjct: 1043 acccactggtagatctcggtggtgtaattggcgcaggtcacgatgttgaacaagaaaccg 984

                                                                        
Query: 435  cgtgggatctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtgg 494
            || ||||||||||| |||||||||||| | |||||||||||||||| || ||||||||||
Sbjct: 983  cgggggatctggtacccgccgctgccgcttgggctcctgaggttccgcagcaggatgtgg 924

                                                                       
Query: 495  cagtagaagtttgcgatctggcacacgaccccgatgccgaacccaatcttcatctgcag 553
            ||||||||||| |||| |||||| |||||||| |  || ||||||||||||||||||||
Sbjct: 923  cagtagaagttcgcgacctggcagacgaccccaaaaccaaacccaatcttcatctgcag 865



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>gb|BT018162.1| Zea mays clone EL01N0556D07.c mRNA sequence
          Length = 1165

 Score =  373 bits (188), Expect = e-100
 Identities = 316/358 (88%), Gaps = 1/358 (0%)
 Strand = Plus / Minus

                                                                        
Query: 197  tcttcacaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatcctt 256
            |||||||||||| ||||| || |||||||| ||||||||||||||||||| |||||||||
Sbjct: 1038 tcttcacaggaacggagggagaatcacccaccggcgagggtacttgggcctcccatcctt 979

                                                                        
Query: 257  cccgtcgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggc 316
             ||||| ||||||||| |||| ||| |||| || || ||||||||||||||||||||| |
Sbjct: 978  gccgtcaaacagcttcttcagacggctgtgtttgccgagcgcccagttggtcatgatgcc 919

                                                                        
Query: 317  cgccgccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgag 376
             ||||||||| |||||||||||||||| ||||||||||| |||||||||||||| |||| 
Sbjct: 918  tgccgccacgacaaggaagacgtaacctgccacggtctgtgtggcgatgttgaagccgac 859

                                                                        
Query: 377  ccattggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccg 436
            ||| |||||||||||||||||||| || ||||| |||||||||||||||| ||| || ||
Sbjct: 858  ccactggtagatctcggtggtgtaattggcgcaggtcacgatgttgaacaagaacccgcg 799

                                                                        
Query: 437  tgggatctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtggca 496
             ||||||||||| || ||||||||| | |||||||||||||||| || ||||||||||||
Sbjct: 798  ggggatctggtaccctccgctgccgcttgggctcctgaggttccgcagcaggatgtggca 739

                                                                      
Query: 497  gtagaagtttgcgatctggcacacgacccc-gatgccgaacccaatcttcatctgcag 553
            ||||||||| |||| |||||| ||||||||  |  || ||||||||||||||||||||
Sbjct: 738  gtagaagttcgcgacctggcagacgaccccaaaaaccaaacccaatcttcatctgcag 681



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>ref|XM_550155.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1226

 Score =  256 bits (129), Expect = 7e-65
 Identities = 295/351 (84%)
 Strand = Plus / Minus

                                                                        
Query: 202  acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261
            |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || |
Sbjct: 1017 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 958

                                                                        
Query: 262  cgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccg 321
            |||||| |||| | || |||  |||||||||||| |||||||||||||||||   ||| |
Sbjct: 957  cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 898

                                                                        
Query: 322  ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 381
            ||||  ||||||||| |||||| ||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 897  ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 838

                                                                        
Query: 382  ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 441
            |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || |
Sbjct: 837  ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 778

                                                                        
Query: 442  tctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtggcagtaga 501
            |||| ||||| ||| | ||  |||| || ||||||||||||| |||||| ||||| || |
Sbjct: 777  tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 718

                                                               
Query: 502  agtttgcgatctggcacacgaccccgatgccgaacccaatcttcatctgca 552
            ||||||| || ||||| |  | ||| |  || |||||||||||||||||||
Sbjct: 717  agtttgcaatttggcagagaatcccaaatccaaacccaatcttcatctgca 667



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>dbj|AK066325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062L06, full
            insert sequence
          Length = 3501

 Score =  256 bits (129), Expect = 7e-65
 Identities = 295/351 (84%)
 Strand = Plus / Minus

                                                                        
Query: 202  acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261
            |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || |
Sbjct: 3206 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 3147

                                                                        
Query: 262  cgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccg 321
            |||||| |||| | || |||  |||||||||||| |||||||||||||||||   ||| |
Sbjct: 3146 cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 3087

                                                                        
Query: 322  ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 381
            ||||  ||||||||| |||||| ||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 3086 ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 3027

                                                                        
Query: 382  ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 441
            |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || |
Sbjct: 3026 ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 2967

                                                                        
Query: 442  tctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtggcagtaga 501
            |||| ||||| ||| | ||  |||| || ||||||||||||| |||||| ||||| || |
Sbjct: 2966 tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 2907

                                                               
Query: 502  agtttgcgatctggcacacgaccccgatgccgaacccaatcttcatctgca 552
            ||||||| || ||||| |  | ||| |  || |||||||||||||||||||
Sbjct: 2906 agtttgcaatttggcagagaatcccaaatccaaacccaatcttcatctgca 2856



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>dbj|AK060948.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F04, full
            insert sequence
          Length = 1221

 Score =  256 bits (129), Expect = 7e-65
 Identities = 295/351 (84%)
 Strand = Plus / Minus

                                                                        
Query: 202  acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261
            |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || |
Sbjct: 1012 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 953

                                                                        
Query: 262  cgaacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccg 321
            |||||| |||| | || |||  |||||||||||| |||||||||||||||||   ||| |
Sbjct: 952  cgaacaacttctttagacggcggtgctttccaagtgcccagttggtcatgatactcgctg 893

                                                                        
Query: 322  ccacggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccatt 381
            ||||  ||||||||| |||||| ||||| ||||| ||||| ||||||||||| |||||||
Sbjct: 892  ccacaacaaggaagatgtaacctgccacagtctgtgtggcaatgttgaacccaagccatt 833

                                                                        
Query: 382  ggtagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtggga 441
            |||||||||| ||||| ||||||||||||||||| ||||||||||||||||| || || |
Sbjct: 832  ggtagatctcagtggtatagtttgcgcatgtcactatgttgaacaggaagccacgaggaa 773

                                                                        
Query: 442  tctggtagccgccgctgccggtcgggctcctgaggttcctcancaggatgtggcagtaga 501
            |||| ||||| ||| | ||  |||| || ||||||||||||| |||||| ||||| || |
Sbjct: 772  tctgatagccaccgttaccactcggacttctgaggttcctcagcaggatatggcaataaa 713

                                                               
Query: 502  agtttgcgatctggcacacgaccccgatgccgaacccaatcttcatctgca 552
            ||||||| || ||||| |  | ||| |  || |||||||||||||||||||
Sbjct: 712  agtttgcaatttggcagagaatcccaaatccaaacccaatcttcatctgca 662



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  210 bits (106), Expect = 4e-51
 Identities = 228/269 (84%)
 Strand = Plus / Plus

                                                                           
Query: 284     gtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacgtaacc 343
               |||||||||||| |||||||||||||||||   ||| |||||  ||||||||| ||||||
Sbjct: 2707086 gtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatgtaacc 2707145

                                                                           
Query: 344     cgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtgtagtt 403
                ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 2707146 tgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggtatagtt 2707205

                                                                           
Query: 404     tgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctgccggt 463
               |||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | ||  |
Sbjct: 2707206 tgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgttaccact 2707265

                                                                           
Query: 464     cgggctcctgaggttcctcancaggatgtggcagtagaagtttgcgatctggcacacgac 523
               ||| || ||||||||||||| |||||| ||||| || |||||||| || ||||| |  | 
Sbjct: 2707266 cggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggcagagaat 2707325

                                            
Query: 524     cccgatgccgaacccaatcttcatctgca 552
               ||| |  || |||||||||||||||||||
Sbjct: 2707326 cccaaatccaaacccaatcttcatctgca 2707354



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                           
Query: 202     acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261
               |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || |
Sbjct: 2706918 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 2706977

                     
Query: 262     cgaaca 267
               ||||||
Sbjct: 2706978 cgaaca 2706983



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>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0434B04
          Length = 167029

 Score =  210 bits (106), Expect = 4e-51
 Identities = 228/269 (84%)
 Strand = Plus / Plus

                                                                          
Query: 284    gtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacgtaacc 343
              |||||||||||| |||||||||||||||||   ||| |||||  ||||||||| ||||||
Sbjct: 156861 gtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatgtaacc 156920

                                                                          
Query: 344    cgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtgtagtt 403
               ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 156921 tgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggtatagtt 156980

                                                                          
Query: 404    tgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctgccggt 463
              |||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | ||  |
Sbjct: 156981 tgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgttaccact 157040

                                                                          
Query: 464    cgggctcctgaggttcctcancaggatgtggcagtagaagtttgcgatctggcacacgac 523
              ||| || ||||||||||||| |||||| ||||| || |||||||| || ||||| |  | 
Sbjct: 157041 cggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggcagagaat 157100

                                           
Query: 524    cccgatgccgaacccaatcttcatctgca 552
              ||| |  || |||||||||||||||||||
Sbjct: 157101 cccaaatccaaacccaatcttcatctgca 157129



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                          
Query: 202    acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261
              |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || |
Sbjct: 156693 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 156752

                    
Query: 262    cgaaca 267
              ||||||
Sbjct: 156753 cgaaca 156758



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>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0009G03
          Length = 163526

 Score =  210 bits (106), Expect = 4e-51
 Identities = 228/269 (84%)
 Strand = Plus / Plus

                                                                         
Query: 284   gtgctttccaagcgcccagttggtcatgatggccgccgccacggcaaggaagacgtaacc 343
             |||||||||||| |||||||||||||||||   ||| |||||  ||||||||| ||||||
Sbjct: 12763 gtgctttccaagtgcccagttggtcatgatactcgctgccacaacaaggaagatgtaacc 12822

                                                                         
Query: 344   cgccacggtctgggtggcgatgttgaacccgagccattggtagatctcggtggtgtagtt 403
              ||||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||
Sbjct: 12823 tgccacagtctgtgtggcaatgttgaacccaagccattggtagatctcagtggtatagtt 12882

                                                                         
Query: 404   tgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagccgccgctgccggt 463
             |||||||||||| ||||||||||||||||| || || ||||| ||||| ||| | ||  |
Sbjct: 12883 tgcgcatgtcactatgttgaacaggaagccacgaggaatctgatagccaccgttaccact 12942

                                                                         
Query: 464   cgggctcctgaggttcctcancaggatgtggcagtagaagtttgcgatctggcacacgac 523
             ||| || ||||||||||||| |||||| ||||| || |||||||| || ||||| |  | 
Sbjct: 12943 cggacttctgaggttcctcagcaggatatggcaataaaagtttgcaatttggcagagaat 13002

                                          
Query: 524   cccgatgccgaacccaatcttcatctgca 552
             ||| |  || |||||||||||||||||||
Sbjct: 13003 cccaaatccaaacccaatcttcatctgca 13031



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 202   acaggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgt 261
             |||||||||| ||||| ||||||||||| ||||| ||||| |||| ||| ||||| || |
Sbjct: 12595 acaggaatggtggaagaatcacccatcgccgaggatacttcggcctcccttccttgccat 12654

                   
Query: 262   cgaaca 267
             ||||||
Sbjct: 12655 cgaaca 12660



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>ref|NM_115394.2| Arabidopsis thaliana CER10/ECR; 3-oxo-5-alpha-steroid
            4-dehydrogenase/ fatty acid elongase AT3G55360
            (CER10/ECR) mRNA, complete cds
          Length = 1319

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 197/248 (79%)
 Strand = Plus / Minus

                                                                        
Query: 204  aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263
            |||||||||||||| ||||||||||  |  || ||||| |||   ||||| || || || 
Sbjct: 1059 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 1000

                                                                        
Query: 264  aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323
            || | ||| ||||| ||| ||||||||||||| ||||| || ||||||||    || || 
Sbjct: 999  aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 940

                                                                        
Query: 324  acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383
            || || ||||| || || || || | |||||| || ||||||||||| || |||||||||
Sbjct: 939  acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 880

                                                                        
Query: 384  tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443
            || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| |||
Sbjct: 879  taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 820

                    
Query: 444  tggtagcc 451
            ||||||||
Sbjct: 819  tggtagcc 812



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>gb|BT012066.1| Arabidopsis thaliana At3g55360 mRNA sequence
          Length = 930

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 197/248 (79%)
 Strand = Plus / Minus

                                                                       
Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263
           |||||||||||||| ||||||||||  |  || ||||| |||   ||||| || || || 
Sbjct: 926 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 867

                                                                       
Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323
           || | ||| ||||| ||| ||||||||||||| ||||| || ||||||||    || || 
Sbjct: 866 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 807

                                                                       
Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383
           || || ||||| || || || || | |||||| || ||||||||||| || |||||||||
Sbjct: 806 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 747

                                                                       
Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443
           || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| |||
Sbjct: 746 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 687

                   
Query: 444 tggtagcc 451
           ||||||||
Sbjct: 686 tggtagcc 679



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>gb|AY081583.1| Arabidopsis thaliana glycoprotein-like (T22E16.2) mRNA, complete
           cds
          Length = 1134

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 197/248 (79%)
 Strand = Plus / Minus

                                                                       
Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263
           |||||||||||||| ||||||||||  |  || ||||| |||   ||||| || || || 
Sbjct: 929 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 870

                                                                       
Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323
           || | ||| ||||| ||| ||||||||||||| ||||| || ||||||||    || || 
Sbjct: 869 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 810

                                                                       
Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383
           || || ||||| || || || || | |||||| || ||||||||||| || |||||||||
Sbjct: 809 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 750

                                                                       
Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443
           || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| |||
Sbjct: 749 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 690

                   
Query: 444 tggtagcc 451
           ||||||||
Sbjct: 689 tggtagcc 682



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>gb|AY065136.1| Arabidopsis thaliana glycoprotein-like (T22E16.2) mRNA, complete
           cds
          Length = 1218

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 197/248 (79%)
 Strand = Plus / Minus

                                                                       
Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263
           |||||||||||||| ||||||||||  |  || ||||| |||   ||||| || || || 
Sbjct: 964 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 905

                                                                       
Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323
           || | ||| ||||| ||| ||||||||||||| ||||| || ||||||||    || || 
Sbjct: 904 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 845

                                                                       
Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383
           || || ||||| || || || || | |||||| || ||||||||||| || |||||||||
Sbjct: 844 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 785

                                                                       
Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443
           || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| |||
Sbjct: 784 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 725

                   
Query: 444 tggtagcc 451
           ||||||||
Sbjct: 724 tggtagcc 717



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>emb|BX826269.1|CNS0A4Y2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL95ZE06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1098

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 197/248 (79%)
 Strand = Plus / Minus

                                                                       
Query: 204 aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263
           |||||||||||||| ||||||||||  |  || ||||| |||   ||||| || || || 
Sbjct: 961 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 902

                                                                       
Query: 264 aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323
           || | ||| ||||| ||| ||||||||||||| ||||| || ||||||||    || || 
Sbjct: 901 aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 842

                                                                       
Query: 324 acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383
           || || ||||| || || || || | |||||| || ||||||||||| || |||||||||
Sbjct: 841 acagcgaggaaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattgg 782

                                                                       
Query: 384 tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443
           || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| |||
Sbjct: 781 taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 722

                   
Query: 444 tggtagcc 451
           ||||||||
Sbjct: 721 tggtagcc 714



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>emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16
          Length = 103240

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 145/179 (81%)
 Strand = Plus / Plus

                                                                        
Query: 273  ctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgccacggcaagg 332
            ||||| ||| ||||||||||||| ||||| || ||||||||    || || || || |||
Sbjct: 3825 ctcagacggctgtgctttccaagagcccaattagtcatgattagagcagcaacagcgagg 3884

                                                                        
Query: 333  aagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattggtagatctcg 392
            || || || || || | |||||| || ||||||||||| || ||||||||||| ||||||
Sbjct: 3885 aaaacatatcctgcaatggtctgagtagcgatgttgaatcctagccattggtaaatctcg 3944

                                                                       
Query: 393  gtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatctggtagcc 451
            || ||||| || || ||||| || |||||||| ||||| || ||||| |||||||||||
Sbjct: 3945 gtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatctggtagcc 4003



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 204  aggaatggaggaaggatcacccatc 228
            |||||||||||||| ||||||||||
Sbjct: 3664 aggaatggaggaagtatcacccatc 3688



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>gb|AY088452.1| Arabidopsis thaliana clone 6774 mRNA, complete sequence
          Length = 1311

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 196/248 (79%)
 Strand = Plus / Minus

                                                                        
Query: 204  aggaatggaggaaggatcacccatcggcgagggtacttgggccgcccatccttcccgtcg 263
            |||||||||||||| ||||||||||  |  || ||||| |||   ||||| || || || 
Sbjct: 1056 aggaatggaggaagtatcacccatcttcttggatactttggctttccatcttttccatca 997

                                                                        
Query: 264  aacagcttcctcaggcggntgtgctttccaagcgcccagttggtcatgatggccgccgcc 323
            || | ||| ||||| ||| ||||||||||||| ||||| || ||||||||    || || 
Sbjct: 996  aatatctttctcagacggctgtgctttccaagagcccaattagtcatgattagagcagca 937

                                                                        
Query: 324  acggcaaggaagacgtaacccgccacggtctgggtggcgatgttgaacccgagccattgg 383
            || || ||||| || || || || | |||||| || || |||||||| || |||||||||
Sbjct: 936  acagcgaggaaaacatatcctgcaatggtctgagtagcaatgttgaatcctagccattgg 877

                                                                        
Query: 384  tagatctcggtggtgtagtttgcgcatgtcacgatgttgaacaggaagccccgtgggatc 443
            || |||||||| ||||| || || ||||| || |||||||| ||||| || ||||| |||
Sbjct: 876  taaatctcggtagtgtaattggcacatgtaacaatgttgaagaggaaaccgcgtggaatc 817

                    
Query: 444  tggtagcc 451
            ||||||||
Sbjct: 816  tggtagcc 809



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>emb|AJ515556.1|CAR515556 Cicer arietinum mRNA for steroid 5-alpha reductase (sr5a gene)
          Length = 1336

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 283 tgtgctttccaagcgcccagttggtcatgat 313
           |||||||| |||| |||||||||||||||||
Sbjct: 960 tgtgctttgcaagagcccagttggtcatgat 930



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>gb|AC119252.10| Mus musculus chromosome 8, clone RP24-279M13, complete sequence
          Length = 176594

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      taacaataggataagaaaata 26
              |||||||||||||||||||||
Sbjct: 103027 taacaataggataagaaaata 103047



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>gb|AE004700.1| Pseudomonas aeruginosa PAO1, section 261 of 529 of the complete
            genome
          Length = 16118

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 449  gccgccgctgccggtcgggct 469
            |||||||||||||||||||||
Sbjct: 2836 gccgccgctgccggtcgggct 2816



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>gb|AY946230.1| Hordeum vulgare subsp. vulgare 3' flanking sequence from Ds
           insertion in TNP-32B
          Length = 1007

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 199 ttcacaggaatggaggaagga 219
           |||||||||||||||||||||
Sbjct: 167 ttcacaggaatggaggaagga 147



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>gb|U48208.1|HIV1U48208 Human immunodeficiency virus type 1 clone 11 sample IV envelope
           glycoprotein (env) gene, C2-V5 region, partial cds
          Length = 660

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 385 agatctcggtggtgtagtttg 405
           |||||||||||||||||||||
Sbjct: 619 agatctcggtggtgtagtttg 599



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>gb|L36679.1|AMLUNA Amycolatopsis methanolica plasmid pMEA300 stf gene, complete cds
          Length = 13285

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 448  agccgccgctgccggtcgggc 468
            |||||||||||||||||||||
Sbjct: 4138 agccgccgctgccggtcgggc 4118



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>gb|M75151.1|RATDNA Rattus norvegicus DNA
          Length = 4931

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 154 aaatgttgaatctctagatac 174
           |||||||||||||||||||||
Sbjct: 856 aaatgttgaatctctagatac 836



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>gb|AC152117.2| Pichia stipitis clone JGIAHYZ-5A1, complete sequence
          Length = 34078

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    acataattgaggtttgacag 74
             ||||||||||||||||||||
Sbjct: 23203 acataattgaggtttgacag 23184



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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ccacggtctgggtggcgatg 365
              ||||||||||||||||||||
Sbjct: 455773 ccacggtctgggtggcgatg 455754



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>ref|XM_473416.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2652

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 448 agccgccgctgccggtcgggctcc 471
           |||||||||| |||||||||||||
Sbjct: 38  agccgccgcttccggtcgggctcc 15



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>emb|CR701735.2|CNS0G4ER Tetraodon nigroviridis full-length cDNA
          Length = 1495

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 309 atgatggccgccgccacggc 328
           ||||||||||||||||||||
Sbjct: 896 atgatggccgccgccacggc 915



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>emb|AL663000.4|OSJN00201 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17,
             complete sequence
          Length = 127259

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 448   agccgccgctgccggtcgggctcc 471
             |||||||||| |||||||||||||
Sbjct: 56858 agccgccgcttccggtcgggctcc 56881



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>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8,
             complete sequence
          Length = 218866

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 349   cggtctgggtggcgatgttg 368
             ||||||||||||||||||||
Sbjct: 99157 cggtctgggtggcgatgttg 99176



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>gb|AC093258.2| Homo sapiens chromosome 5 clone RP11-1E3, complete sequence
          Length = 151202

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   aacactggaacagaataaat 157
             ||||||||||||||||||||
Sbjct: 88947 aacactggaacagaataaat 88966



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>gb|AC146538.2| Gasterosteus aculeatus clone CH213-118G22, complete sequence
          Length = 211945

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 307   tcatgatggccgccgccacg 326
             ||||||||||||||||||||
Sbjct: 44879 tcatgatggccgccgccacg 44860



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 448      agccgccgctgccggtcgggctcc 471
                |||||||||| |||||||||||||
Sbjct: 27532882 agccgccgcttccggtcgggctcc 27532905



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>gb|AC073624.28| Homo sapiens chromosome 17, clone RP11-537K14, complete sequence
          Length = 145512

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   agataccagccttgcaagca 188
             ||||||||||||||||||||
Sbjct: 31611 agataccagccttgcaagca 31592



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>gb|AC011750.8| Homo sapiens BAC clone RP11-458C9 from 2, complete sequence
          Length = 139166

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 138   aacactggaacagaataaatgttg 161
             |||||||||||| |||||||||||
Sbjct: 53954 aacactggaacaaaataaatgttg 53977



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 319     ccgccacggcaaggaagacg 338
               ||||||||||||||||||||
Sbjct: 2510070 ccgccacggcaaggaagacg 2510089



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 346     ccacggtctgggtggcgatg 365
               ||||||||||||||||||||
Sbjct: 1510673 ccacggtctgggtggcgatg 1510654



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>emb|AL935283.16| Zebrafish DNA sequence from clone CH211-247O1 in linkage group 7,
              complete sequence
          Length = 197927

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 349    cggtctgggtggcgatgttg 368
              ||||||||||||||||||||
Sbjct: 170816 cggtctgggtggcgatgttg 170797



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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 443     ctggtagccgccgctgccgg 462
               ||||||||||||||||||||
Sbjct: 1724509 ctggtagccgccgctgccgg 1724528



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>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome
          Length = 1197687

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 6       taacaataggataagaaaat 25
               ||||||||||||||||||||
Sbjct: 1069442 taacaataggataagaaaat 1069423


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,350,190
Number of Sequences: 3902068
Number of extensions: 4350190
Number of successful extensions: 82781
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82412
Number of HSP's gapped (non-prelim): 369
length of query: 554
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 531
effective length of database: 17,143,297,704
effective search space: 9103091080824
effective search space used: 9103091080824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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