ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags15a14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JI23_HORVU (P32024) 23 kDa jasmonate-induced protein 206 3e-53
2JIPH_ATRCA (P42764) Jasmonate-induced protein homolog 41 0.002
3IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precurso... 31 2.5
4YP158_YEAST (Q99299) Protein YPL158C 31 3.3
5CARA_ACIAD (Q6F8M7) Carbamoyl-phosphate synthase small chain (EC... 30 5.7

>JI23_HORVU (P32024) 23 kDa jasmonate-induced protein|
          Length = 210

 Score =  206 bits (525), Expect = 3e-53
 Identities = 93/130 (71%), Positives = 107/130 (82%), Gaps = 2/130 (1%)
 Frame = -3

Query: 609 YKNWIGSIFDTPYPSDIQNGQWGAFLHVKPRAAAKGSTAAVVYRSRIPXXXXSCDWLFTW 430
           Y +W G I+DTPYPSDIQNGQWGAFLHV P  AA GS  AVVYRS+IP    SCDWLF+W
Sbjct: 81  YNDWHGHIYDTPYPSDIQNGQWGAFLHVHPSGAAAGSAGAVVYRSKIPSSSSSCDWLFSW 140

Query: 429 SVPFIGNNGVYTEIREQGHFPK--HWDYIYNVRLANSNLHSTDSNYGYVSRANIGEGTTM 256
           +VP+IG NGVYTEIRE+GH+P    WDYIYNV+L NS++ S DSNYGYVS+A+IGEGTTM
Sbjct: 141 TVPYIGGNGVYTEIREEGHYPSVGSWDYIYNVKLKNSSVTSIDSNYGYVSKADIGEGTTM 200

Query: 255 NARAVFQLPY 226
           NAR VF+ PY
Sbjct: 201 NARGVFEFPY 210



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>JIPH_ATRCA (P42764) Jasmonate-induced protein homolog|
          Length = 185

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 35/108 (32%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
 Frame = -3

Query: 603 NWIGSIFDTPYPSDIQNGQWGAFLHVKPRAAAKGSTAAVVYRSRIPXXXXSCDWLFTWSV 424
           NW GS+  T YP  I   Q   F+H     A  GS  AVVY          C WL  W  
Sbjct: 56  NWSGSVVGTGYPKSIPTKQSRQFIH--QGDAKDGSQGAVVYYGS-NANGEPCGWLLAWCA 112

Query: 423 PF----IGNNGVYTEIREQGHFPK-HWDYI---YNVRLANSNLHSTDS 304
           P        N VY +   Q  F    WD I    +V  A +N    D+
Sbjct: 113 PTNVTPTKPNRVYVDCGAQSKFDTISWDTIKAKLDVGPATTNFTDVDT 160



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>IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)|
           (CD124 antigen)
          Length = 809

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
 Frame = -3

Query: 531 HVKPRAAAKGSTAAVVYRSRIPXXXXSCDWLFTWSVPFIGNNGVYTEIREQGHFPKHWD- 355
           HVKPRA    +  A+ +            WL TWS P+   N +++E+    +  K  D 
Sbjct: 120 HVKPRAPQNLTVHAISHT-----------WLLTWSNPYPLKNHLWSELTYLVNISKEDDP 168

Query: 354 ---YIYNVRLANSNLHSTDS 304
               IYNV   +  L  T S
Sbjct: 169 TDFKIYNVTYMDPTLRVTAS 188



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>YP158_YEAST (Q99299) Protein YPL158C|
          Length = 758

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = -3

Query: 420 FIGNNGVYTEIREQGHFPKHWDYIYNVRLANSNLHSTDSNYGYVSRANIGEGTTMNARAV 241
           F   NGV  +  E G+     DY      +N+N +S  S+ GY S ANI + TT + R V
Sbjct: 49  FAAENGVSRD--EDGNSQTLSDY---TSTSNTNTNSGYSSNGYYSFANISDNTTSSPRIV 103



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>CARA_ACIAD (Q6F8M7) Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)|
           (Carbamoyl-phosphate synthetase glutamine chain)
          Length = 379

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -3

Query: 441 LFTWSVPFIGNNGVYTEIREQGHFPKHWD---YIYNVRLANSNLHSTDSNYGYVSRANI 274
           L T + P IGN G   E  E G   K W     I ++ L +SN  S  S   Y+ + N+
Sbjct: 52  LVTLTYPHIGNTGCNEEDTESGRIHKVWANGLIIRDLPLLHSNFRSEQSLAEYLIQHNV 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,423,792
Number of Sequences: 219361
Number of extensions: 1996380
Number of successful extensions: 4694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4693
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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