| Clone Name | rbags14l13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467591.1| Oryza sativa (japonica cultivar-group), mRNA Length = 726 Score = 446 bits (225), Expect = e-122 Identities = 366/413 (88%) Strand = Plus / Minus Query: 190 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 249 |||||||||| |||||||||||||| || ||||||| |||||| || | ||| || || | Sbjct: 521 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 462 Query: 250 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 309 |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| | Sbjct: 461 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 402 Query: 310 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 369 |||| ||||| |||||||| ||||| || || || ||||| ||||||||||||| ||||| Sbjct: 401 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcctcttttgatggcacat 342 Query: 370 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 429 ||||||| || | ||| ||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 341 atatgtaaggaatattagcttcctcacaaagtattggaacatgtgtaatcacatcgatag 282 Query: 430 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 489 |||| || || |||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 281 gagaaatattcccagcaattacacacaaccctttgttcccacgacggatgctcttgacca 222 Query: 490 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 549 |||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||| Sbjct: 221 cctccttgactccccgcttcaggcacttggcctccgatgctcgccggacgagcttgaggg 162 Query: 550 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgcc 602 || |||| ||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 161 ttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcgagcgcc 109
>dbj|AK063054.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-F02, full insert sequence Length = 726 Score = 446 bits (225), Expect = e-122 Identities = 366/413 (88%) Strand = Plus / Minus Query: 190 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 249 |||||||||| |||||||||||||| || ||||||| |||||| || | ||| || || | Sbjct: 521 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 462 Query: 250 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 309 |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| | Sbjct: 461 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 402 Query: 310 cgcagcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacat 369 |||| ||||| |||||||| ||||| || || || ||||| ||||||||||||| ||||| Sbjct: 401 cgcaacaggtaggcctcttagtagtcccggcagtagcaagatcctcttttgatggcacat 342 Query: 370 atatgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgatag 429 ||||||| || | ||| ||||||||||||||||| |||| |||||||||||||||||||| Sbjct: 341 atatgtaaggaatattagcttcctcacaaagtattggaacatgtgtaatcacatcgatag 282 Query: 430 gagagatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgacca 489 |||| || || |||||||||||||||||||||||| ||||||| |||||||||||||||| Sbjct: 281 gagaaatattcccagcaattacacacaaccctttgttcccacgacggatgctcttgacca 222 Query: 490 cctccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgaggg 549 |||||||||| || ||||||||||||||||||||||| ||||| || ||||||||||||| Sbjct: 221 cctccttgactccccgcttcaggcacttggcctccgatgctcgccggacgagcttgaggg 162 Query: 550 ttttcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgcc 602 || |||| ||||||||||||||||||| ||||| ||||||||||| |||||| Sbjct: 161 ttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcgagcgcc 109
>gb|AY104029.1| Zea mays PCO076082 mRNA sequence Length = 1018 Score = 335 bits (169), Expect = 1e-88 Identities = 384/453 (84%), Gaps = 2/453 (0%) Strand = Plus / Minus Query: 193 agaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgattcca 252 ||||||| | ||||||| ||||||| ||||| |||||||| || | || || || | || Sbjct: 511 agaacattgcagatgtagcctcagcaacttccgttacaacttggtcatagtctgacttca 452 Query: 253 gtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaacacgc 312 |||| ||||||||||| ||| ||| |||||||||| ||| ||||||| |||| |||| Sbjct: 451 gtttatccttcacctcgtcactgagctcccccttgtttggtttggtcagaaccaggacgc 392 Query: 313 agcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacatata 372 | || || |||||||| || || |||||||||||||| ||||||||||||| ||||||| Sbjct: 391 aacaagttggcctcttagtggttcccgcggtcgcaagatcctcttttgatggaacatata 332 Query: 373 tgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgataggag 432 |||| || ||||| | ||||||||| ||||| |||| |||||||||||||| ||||||| Sbjct: 331 tgtaaggaacattagattcctcacatagtattggaacgtgtgtaatcacatcaataggag 272 Query: 433 agatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgaccacct 492 | || ||||||||||| ||||||||||||||| |||| ||||| ||||||||||| |||| Sbjct: 271 aaatatttccagcaatcacacacaaccctttgttcccgcggcgaatgctcttgactacct 212 Query: 493 ccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgagggttt 552 | ||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| Sbjct: 211 ctttgactccgcgcttgaggcacttggcctcagaggctcgtcgcacgagcttgagggtcc 152 Query: 553 tcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccacccggggtc 612 |||| |||||||||| || ||||| ||||| ||||||||| |||||||| |||||||| Sbjct: 151 gcttgcagagcttctttccagcgagaggcttcgcgatgggcatcagcgcca-ccggggtc 93 Query: 613 ttcttcttctccgtcttccgtgtcgctccccat 645 ||||||||||||||| ||| |||||||||||| Sbjct: 92 ttcttcttctccgtc-tccaggtcgctccccat 61
>gb|BT017981.1| Zea mays clone EL01N0525C06.c mRNA sequence Length = 1073 Score = 327 bits (165), Expect = 3e-86 Identities = 383/453 (84%), Gaps = 2/453 (0%) Strand = Plus / Minus Query: 193 agaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgattcca 252 ||||||| | ||||||| ||||||| ||||| |||||||| || | || || || | || Sbjct: 517 agaacattgcagatgtagcctcagcaacttccgttacaacttggtcatagtctgacttca 458 Query: 253 gtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaacacgc 312 |||| ||||||||||| ||| ||| |||||||||| ||| ||||||| |||| |||| Sbjct: 457 gtttatccttcacctcgtcactgagctcccccttgtttggtttggtcagaaccaggacgc 398 Query: 313 agcaggtgggcctcttggtagtacccgcggtcgcaagctcctcttttgatgtcacatata 372 | || || |||||||| || || || ||||||||||| ||||||||||||| ||||||| Sbjct: 397 aacaagttggcctcttagtggttcctgcggtcgcaagatcctcttttgatggaacatata 338 Query: 373 tgtatgggacattggcttcctcacaaagtatgggaagatgtgtaatcacatcgataggag 432 |||| || ||||| | ||||||||| ||||| |||| |||||||||||||| ||||||| Sbjct: 337 tgtaaggaacattagattcctcacatagtattggaacgtgtgtaatcacatcaataggag 278 Query: 433 agatgtttccagcaattacacacaaccctttgctcccacggcggatgctcttgaccacct 492 | || ||||||||||| ||||||||||||||| |||| ||||| ||||||||||| |||| Sbjct: 277 aaatatttccagcaatcacacacaaccctttgttcccgcggcgaatgctcttgactacct 218 Query: 493 ccttgaccccgcgcttcaggcacttggcctccgaggctcggcgaacgagcttgagggttt 552 | ||||| |||||||| |||||||||||||| |||||||| || |||||||||||||| Sbjct: 217 ctttgactccgcgcttgaggcacttggcctcagaggctcgtcgcacgagcttgagggtcc 158 Query: 553 tcttggagagcttcttgccggcgagcggcttggcgatgggcgccagcgccacccggggtc 612 |||| |||||||||| || ||||| ||||| ||||||||| |||||||| |||||||| Sbjct: 157 gcttgcagagcttctttccagcgaggggcttcgcgatgggcatcagcgcca-ccggggtc 99 Query: 613 ttcttcttctccgtcttccgtgtcgctccccat 645 ||||||||||||||| ||| |||||||||||| Sbjct: 98 ttcttcttctccgtc-tccaggtcgctccccat 67
>ref|NM_185783.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 453 Score = 262 bits (132), Expect = 1e-66 Identities = 308/364 (84%), Gaps = 2/364 (0%) Strand = Plus / Minus Query: 282 cccttggctggcttggtcatcaccaacacgcagcaggtgggcctcttggtagtacccgcg 341 ||||||||||||||||||| ||||| || || ||||| |||||||||||||| || || Sbjct: 362 cccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtcccagct 303 Query: 342 gtcgcaagctcctcttttgatgtcacatatatgtatgggacattggcttcctcacaaagt 401 || || || |||||||| || | ||||||| || || | |||||||| || ||||| Sbjct: 302 gttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcgcaaagg 243 Query: 402 atgggaagatgtgtaatcacatcgataggagagatgtttccagcaattacacacaaccct 461 ||||||| |||||| |||||||| || ||||| ||||| |||||||| | ||||| ||| Sbjct: 242 atgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgcacaatcct 183 Query: 462 ttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcacttggcc 521 || ||| ||||||||||||||||| ||||||||||| || ||||||| ||| |||||| Sbjct: 182 ttctgcccgcggcggatgctcttgacgacctccttgactcctcgcttcaagcatttggcc 123 Query: 522 tccgaggctcggcgaacgagcttgagggttttcttggagagcttcttgccggcgagcggc 581 || || |||||||| ||||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 122 tcagacgctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcgagcggc 63 Query: 582 ttggcgatgggcgccagcgccacccggggtcttcttcttctccgtcttccgtgtcgctcc 641 || ||||||||||||||||||| | || |||||||||||||||| | ||||||||||||| Sbjct: 62 ttcgcgatgggcgccagcgcca-cgggcgtcttcttcttctccg-cctccgtgtcgctcc 5 Query: 642 ccat 645 |||| Sbjct: 4 ccat 1
>dbj|AK073155.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033011J22, full insert sequence Length = 784 Score = 262 bits (132), Expect = 1e-66 Identities = 308/364 (84%), Gaps = 2/364 (0%) Strand = Plus / Minus Query: 282 cccttggctggcttggtcatcaccaacacgcagcaggtgggcctcttggtagtacccgcg 341 ||||||||||||||||||| ||||| || || ||||| |||||||||||||| || || Sbjct: 463 cccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtcccagct 404 Query: 342 gtcgcaagctcctcttttgatgtcacatatatgtatgggacattggcttcctcacaaagt 401 || || || |||||||| || | ||||||| || || | |||||||| || ||||| Sbjct: 403 gttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcgcaaagg 344 Query: 402 atgggaagatgtgtaatcacatcgataggagagatgtttccagcaattacacacaaccct 461 ||||||| |||||| |||||||| || ||||| ||||| |||||||| | ||||| ||| Sbjct: 343 atgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgcacaatcct 284 Query: 462 ttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcacttggcc 521 || ||| ||||||||||||||||| ||||||||||| || ||||||| ||| |||||| Sbjct: 283 ttctgcccgcggcggatgctcttgacgacctccttgactcctcgcttcaagcatttggcc 224 Query: 522 tccgaggctcggcgaacgagcttgagggttttcttggagagcttcttgccggcgagcggc 581 || || |||||||| ||||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 223 tcagacgctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcgagcggc 164 Query: 582 ttggcgatgggcgccagcgccacccggggtcttcttcttctccgtcttccgtgtcgctcc 641 || ||||||||||||||||||| | || |||||||||||||||| | ||||||||||||| Sbjct: 163 ttcgcgatgggcgccagcgcca-cgggcgtcttcttcttctccg-cctccgtgtcgctcc 106 Query: 642 ccat 645 |||| Sbjct: 105 ccat 102
>dbj|AK058973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D03, full insert sequence Length = 1175 Score = 262 bits (132), Expect = 1e-66 Identities = 308/364 (84%), Gaps = 2/364 (0%) Strand = Plus / Minus Query: 282 cccttggctggcttggtcatcaccaacacgcagcaggtgggcctcttggtagtacccgcg 341 ||||||||||||||||||| ||||| || || ||||| |||||||||||||| || || Sbjct: 846 cccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagtcccagct 787 Query: 342 gtcgcaagctcctcttttgatgtcacatatatgtatgggacattggcttcctcacaaagt 401 || || || |||||||| || | ||||||| || || | |||||||| || ||||| Sbjct: 786 gttgcgagatcctctttcgacggaacatatacataaggaatgttggcttcttcgcaaagg 727 Query: 402 atgggaagatgtgtaatcacatcgataggagagatgtttccagcaattacacacaaccct 461 ||||||| |||||| |||||||| || ||||| ||||| |||||||| | ||||| ||| Sbjct: 726 atgggaacatgtgttatcacatcaatgggagaaatgttgccagcaatgatgcacaatcct 667 Query: 462 ttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcacttggcc 521 || ||| ||||||||||||||||| ||||||||||| || ||||||| ||| |||||| Sbjct: 666 ttctgcccgcggcggatgctcttgacgacctccttgactcctcgcttcaagcatttggcc 607 Query: 522 tccgaggctcggcgaacgagcttgagggttttcttggagagcttcttgccggcgagcggc 581 || || |||||||| ||||||||||||||| |||| ||||||||||||||||||||||| Sbjct: 606 tcagacgctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcgagcggc 547 Query: 582 ttggcgatgggcgccagcgccacccggggtcttcttcttctccgtcttccgtgtcgctcc 641 || ||||||||||||||||||| | || |||||||||||||||| | ||||||||||||| Sbjct: 546 ttcgcgatgggcgccagcgcca-cgggcgtcttcttcttctccg-cctccgtgtcgctcc 489 Query: 642 ccat 645 |||| Sbjct: 488 ccat 485
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 137 bits (69), Expect = 5e-29 Identities = 107/117 (91%), Gaps = 2/117 (1%) Strand = Plus / Minus Query: 529 ctcggcgaacgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcga 588 ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 9294193 ctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcga 9294134 Query: 589 tgggcgccagcgccacccggggtcttcttcttctccgtcttccgtgtcgctccccat 645 ||||||||||||||| | || |||||||||||||||| | ||||||||||||||||| Sbjct: 9294133 tgggcgccagcgcca-cgggcgtcttcttcttctccg-cctccgtgtcgctccccat 9294079 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 471 cggcggatgctcttgaccacctccttgaccccgcgcttcaggcacttggcctc 523 ||||||||||||||||| ||||||||||| || ||||||| ||| |||||||| Sbjct: 9294357 cggcggatgctcttgacgacctccttgactcctcgcttcaagcatttggcctc 9294305 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 282 cccttggctggcttggtcatcaccaacacgcagcaggtgggcctcttggtagt 334 ||||||||||||||||||| ||||| || || ||||| |||||||||||||| Sbjct: 9295735 cccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagt 9295683
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 137 bits (69), Expect = 5e-29 Identities = 126/145 (86%) Strand = Plus / Plus Query: 190 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 249 |||||||||| |||||||||||||| || ||||||| |||||| || | ||| || || | Sbjct: 30342104 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 30342163 Query: 250 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 309 |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| | Sbjct: 30342164 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 30342223 Query: 310 cgcagcaggtgggcctcttggtagt 334 |||| ||||| |||||||| ||||| Sbjct: 30342224 cgcaacaggtaggcctcttagtagt 30342248 Score = 135 bits (68), Expect = 2e-28 Identities = 98/108 (90%) Strand = Plus / Plus Query: 352 cctcttttgatgtcacatatatgtatgggacattggcttcctcacaaagtatgggaagat 411 |||||||||||| |||||||||||| || | ||| ||||||||||||||||| |||| || Sbjct: 30343023 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 30343082 Query: 412 gtgtaatcacatcgataggagagatgtttccagcaattacacacaacc 459 |||||||||||||||||||||| || || ||||||||||||||||||| Sbjct: 30343083 gtgtaatcacatcgataggagaaatattcccagcaattacacacaacc 30343130 Score = 109 bits (55), Expect = 1e-20 Identities = 67/71 (94%) Strand = Plus / Plus Query: 456 aaccctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcac 515 ||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct: 30343785 aaccctttgttcccacgacggatgctcttgaccacctccttgactccccgcttcaggcac 30343844 Query: 516 ttggcctccga 526 ||||||||||| Sbjct: 30343845 ttggcctccga 30343855 Score = 83.8 bits (42), Expect = 7e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgggcgcc 596 ||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||| Sbjct: 30343986 acgagcttgagggttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcg 30344045 Query: 597 agcgcc 602 |||||| Sbjct: 30344046 agcgcc 30344051 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 cggcgagcggcttggcgatg 590 |||||||||||||||||||| Sbjct: 15798178 cggcgagcggcttggcgatg 15798159
>dbj|AP005813.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0676F10 Length = 142510 Score = 137 bits (69), Expect = 5e-29 Identities = 107/117 (91%), Gaps = 2/117 (1%) Strand = Plus / Minus Query: 529 ctcggcgaacgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcga 588 ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 61534 ctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcga 61475 Query: 589 tgggcgccagcgccacccggggtcttcttcttctccgtcttccgtgtcgctccccat 645 ||||||||||||||| | || |||||||||||||||| | ||||||||||||||||| Sbjct: 61474 tgggcgccagcgcca-cgggcgtcttcttcttctccg-cctccgtgtcgctccccat 61420 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 471 cggcggatgctcttgaccacctccttgaccccgcgcttcaggcacttggcctc 523 ||||||||||||||||| ||||||||||| || ||||||| ||| |||||||| Sbjct: 61698 cggcggatgctcttgacgacctccttgactcctcgcttcaagcatttggcctc 61646 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 282 cccttggctggcttggtcatcaccaacacgcagcaggtgggcctcttggtagt 334 ||||||||||||||||||| ||||| || || ||||| |||||||||||||| Sbjct: 63076 cccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagt 63024
>dbj|AP003044.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0038C05 Length = 152941 Score = 137 bits (69), Expect = 5e-29 Identities = 107/117 (91%), Gaps = 2/117 (1%) Strand = Plus / Minus Query: 529 ctcggcgaacgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcga 588 ||||||| ||||||||||||||| |||| ||||||||||||||||||||||||| |||| Sbjct: 22603 ctcggcggacgagcttgagggttcgcttgcagagcttcttgccggcgagcggcttcgcga 22544 Query: 589 tgggcgccagcgccacccggggtcttcttcttctccgtcttccgtgtcgctccccat 645 ||||||||||||||| | || |||||||||||||||| | ||||||||||||||||| Sbjct: 22543 tgggcgccagcgcca-cgggcgtcttcttcttctccg-cctccgtgtcgctccccat 22489 Score = 65.9 bits (33), Expect = 2e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 471 cggcggatgctcttgaccacctccttgaccccgcgcttcaggcacttggcctc 523 ||||||||||||||||| ||||||||||| || ||||||| ||| |||||||| Sbjct: 22767 cggcggatgctcttgacgacctccttgactcctcgcttcaagcatttggcctc 22715 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 282 cccttggctggcttggtcatcaccaacacgcagcaggtgggcctcttggtagt 334 ||||||||||||||||||| ||||| || || ||||| |||||||||||||| Sbjct: 24145 cccttggctggcttggtcagaaccaatacacaacaggtaggcctcttggtagt 24093
>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0072H09 Length = 160541 Score = 137 bits (69), Expect = 5e-29 Identities = 126/145 (86%) Strand = Plus / Plus Query: 190 ctcagaacatagaagatgtaacctcagcgacttcagttacaacctgcttgtattccgatt 249 |||||||||| |||||||||||||| || ||||||| |||||| || | ||| || || | Sbjct: 22964 ctcagaacattgaagatgtaacctctgcaacttcagctacaacatggtcgtagtctgact 23023 Query: 250 ccagtttctccttcacctcttcagtgatctcccccttggctggcttggtcatcaccaaca 309 |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| | Sbjct: 23024 tcagtttctccttcacctcttcattgatctcccccttggcaggcttggtcataaccagga 23083 Query: 310 cgcagcaggtgggcctcttggtagt 334 |||| ||||| |||||||| ||||| Sbjct: 23084 cgcaacaggtaggcctcttagtagt 23108 Score = 135 bits (68), Expect = 2e-28 Identities = 98/108 (90%) Strand = Plus / Plus Query: 352 cctcttttgatgtcacatatatgtatgggacattggcttcctcacaaagtatgggaagat 411 |||||||||||| |||||||||||| || | ||| ||||||||||||||||| |||| || Sbjct: 23883 cctcttttgatggcacatatatgtaaggaatattagcttcctcacaaagtattggaacat 23942 Query: 412 gtgtaatcacatcgataggagagatgtttccagcaattacacacaacc 459 |||||||||||||||||||||| || || ||||||||||||||||||| Sbjct: 23943 gtgtaatcacatcgataggagaaatattcccagcaattacacacaacc 23990 Score = 109 bits (55), Expect = 1e-20 Identities = 67/71 (94%) Strand = Plus / Plus Query: 456 aaccctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcac 515 ||||||||| ||||||| |||||||||||||||||||||||||| || |||||||||||| Sbjct: 24645 aaccctttgttcccacgacggatgctcttgaccacctccttgactccccgcttcaggcac 24704 Query: 516 ttggcctccga 526 ||||||||||| Sbjct: 24705 ttggcctccga 24715 Score = 83.8 bits (42), Expect = 7e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgggcgcc 596 ||||||||||||||| |||| ||||||||||||||||||| ||||| ||||||||||| Sbjct: 24846 acgagcttgagggttcgcttgcagagcttcttgccggcgagaggcttcgcgatgggcgcg 24905 Query: 597 agcgcc 602 |||||| Sbjct: 24906 agcgcc 24911
>gb|DQ427235.1| Sorghum propinquum locus C0235 genomic sequence Length = 688 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 246 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 187 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 186 tggcctcagaggct 173 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427234.1| Sorghum bicolor voucher PI585454 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427233.1| Sorghum bicolor voucher PI267539 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427232.1| Sorghum bicolor voucher PI267408 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427231.1| Sorghum bicolor voucher PI221607 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427230.1| Sorghum bicolor voucher PI152702 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427229.1| Sorghum bicolor voucher NSL92371 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427228.1| Sorghum bicolor voucher NSL87902 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427227.1| Sorghum bicolor voucher NSL87666 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427226.1| Sorghum bicolor voucher NSL77217 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427225.1| Sorghum bicolor voucher NSL77034 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427224.1| Sorghum bicolor voucher NSL56174 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427223.1| Sorghum bicolor voucher NSL56003 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427222.1| Sorghum bicolor voucher NSL55243 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427221.1| Sorghum bicolor voucher NSL51365 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427220.1| Sorghum bicolor voucher NSL51030 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427219.1| Sorghum bicolor voucher NSL50875 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>gb|DQ427218.1| Sorghum bicolor voucher BTx623 locus C0235 genomic sequence Length = 682 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 457 accctttgctcccacggcggatgctcttgaccacctccttgaccccgcgcttcaggcact 516 |||||||| |||| ||||| ||||||||||| ||||| ||||| |||||||| ||||||| Sbjct: 234 accctttgttcccgcggcgaatgctcttgactacctctttgactccgcgcttgaggcact 175 Query: 517 tggcctccgaggct 530 ||||||| |||||| Sbjct: 174 tggcctcagaggct 161 Score = 46.1 bits (23), Expect = 0.15 Identities = 47/55 (85%) Strand = Plus / Minus Query: 537 acgagcttgagggttttcttggagagcttcttgccggcgagcggcttggcgatgg 591 |||||||||||||| |||| |||||||||| || ||||| ||||| ||||||| Sbjct: 55 acgagcttgagggtccgcttgcagagcttctttccagcgaggggcttcgcgatgg 1
>ref|NM_120901.2| Arabidopsis thaliana RNA binding / structural constituent of ribosome AT5G08180 mRNA, complete cds Length = 731 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 405 ggaagatgtgtaatcacatcgataggagagatgtttccagcaattacacacaacccttt 463 |||||||| ||||| ||||| ||||| || ||||||||||| |||||||| || ||||| Sbjct: 331 ggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 273
>gb|AY050477.1| Arabidopsis thaliana AT5g08180/T22D6_120 mRNA, complete cds Length = 471 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 405 ggaagatgtgtaatcacatcgataggagagatgtttccagcaattacacacaacccttt 463 |||||||| ||||| ||||| ||||| || ||||||||||| |||||||| || ||||| Sbjct: 257 ggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 199
>gb|AF378885.1|AF378885 Arabidopsis thaliana AT5g08180/T22D6_120 mRNA, complete cds Length = 703 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 405 ggaagatgtgtaatcacatcgataggagagatgtttccagcaattacacacaacccttt 463 |||||||| ||||| ||||| ||||| || ||||||||||| |||||||| || ||||| Sbjct: 331 ggaagatgagtaataacatcaataggtgaaatgtttccagctattacacataatccttt 273
>emb|AL357612.1|ATT22D6 Arabidopsis thaliana DNA chromosome 5, BAC clone T22D6 (ESSA project) Length = 89988 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 405 ggaagatgtgtaatcacatcgataggagagatgtttccagcaattacaca 454 |||||||| ||||| ||||| ||||| || ||||||||||| |||||||| Sbjct: 58818 ggaagatgagtaataacatcaataggtgaaatgtttccagctattacaca 58867
>emb|CR378101.1| Pinus pinaster SSR, clone PPB2F01 Length = 570 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttccg 632 |||||||||||||||||||||| Sbjct: 155 tcttcttcttctccgtcttccg 176
>gb|AC010510.6|AC010510 Homo sapiens chromosome 19 clone LLNLF-191G6, complete sequence Length = 42307 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Plus Query: 248 ttccagtttctccttcacctct 269 |||||||||||||||||||||| Sbjct: 4734 ttccagtttctccttcacctct 4755
>gb|AC123646.8| Mus musculus chromosome 19, clone RP23-104P24, complete sequence Length = 189534 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 611 tcttcttcttctccgtcttcc 631 ||||||||||||||||||||| Sbjct: 93326 tcttcttcttctccgtcttcc 93306
>gb|AF039715.1| Caenorhabditis elegans cosmid R06A10, complete sequence Length = 33120 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttcc 631 ||||||||||||||||||||| Sbjct: 1537 tcttcttcttctccgtcttcc 1557
>ref|XM_747634.1| Aspergillus fumigatus Af293 small nuclear ribonucleoprotein complex protein Nhp2 (Afu1g13570) partial mRNA Length = 972 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 482 cttgaccacctccttgaccccgcgcttcaggcacttg 518 |||||| || |||||||| ||||| |||||||||||| Sbjct: 630 cttgacgacttccttgacaccgcgtttcaggcacttg 594
>emb|BX649606.1| Aspergillus fumigatus BAC pilot project supercontig; segment 2/3 Length = 348551 Score = 42.1 bits (21), Expect = 2.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 482 cttgaccacctccttgaccccgcgcttcaggcacttg 518 |||||| || |||||||| ||||| |||||||||||| Sbjct: 307507 cttgacgacttccttgacaccgcgtttcaggcacttg 307543
>ref|NM_067014.2| Caenorhabditis elegans Y48A6B.3 (Y48A6B.3) mRNA, complete cds Length = 616 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 419 cacatcgataggagagatgtttccagcaa 447 ||||||||| ||||||| ||||||||||| Sbjct: 310 cacatcgattggagagacgtttccagcaa 282
>ref|NM_058416.3| Caenorhabditis elegans G protein, Subunit Alpha family member (gsa-1) (gsa-1) mRNA, complete cds Length = 2200 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttcc 631 ||||||||||||||||||||| Sbjct: 178 tcttcttcttctccgtcttcc 198
>dbj|AB196458.1| Oncorhynchus mykiss HSP90BB mRNA for heat shock 90kDa protein 1 beta isoform b, complete cds Length = 2694 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 tcttgaccacctccttgaccc 501 ||||||||||||||||||||| Sbjct: 657 tcttgaccacctccttgaccc 637
>dbj|AB196457.1| Oncorhynchus mykiss HSP90BA mRNA for heat shock 90kDa protein 1 beta isoform a, complete cds Length = 2683 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 tcttgaccacctccttgaccc 501 ||||||||||||||||||||| Sbjct: 664 tcttgaccacctccttgaccc 644
>gb|AF135117.1|AF135117 Salmo salar heat shock protein hsp90 beta (hsp90 beta) mRNA, complete cds Length = 2625 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 481 tcttgaccacctccttgaccc 501 ||||||||||||||||||||| Sbjct: 692 tcttgaccacctccttgaccc 672
>emb|AL513356.8| Mouse DNA sequence from clone RP23-193O17 on chromosome X, complete sequence Length = 216238 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 tttctccttcacctcttcagt 274 ||||||||||||||||||||| Sbjct: 127886 tttctccttcacctcttcagt 127866
>dbj|AB003487.1| Caenorhabditis elegans DNA for G protein alpha subunit, complete cds Length = 6686 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttcc 631 ||||||||||||||||||||| Sbjct: 432 tcttcttcttctccgtcttcc 452
>dbj|AB003486.1| Caenorhabditis elegans mRNA for G protein a(s) subunit, complete cds Length = 2214 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttcc 631 ||||||||||||||||||||| Sbjct: 178 tcttcttcttctccgtcttcc 198
>ref|NM_119044.2| Arabidopsis thaliana transcription factor AT4G29000 mRNA, complete cds Length = 2720 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 120 tcttcttcttctccgtcttc 139
>ref|NM_123452.3| Arabidopsis thaliana ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase AT5G40870 mRNA, complete cds Length = 1819 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 233 tcttcttcttctccgtcttc 252
>ref|NM_106690.3| Arabidopsis thaliana EMB2753 AT1G80410 (EMB2753) mRNA, complete cds Length = 3320 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 97 tcttcttcttctccgtcttc 116
>ref|XM_480256.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2274 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 1628 tcttcttcttctccgtcttc 1647
>ref|XM_479859.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2398 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 128 tcttcttcttctccgtcttc 147
>ref|XM_479860.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2545 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 120 tcttcttcttctccgtcttc 139
>ref|XM_465535.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1309 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 cggcgagcggcttggcgatg 590 |||||||||||||||||||| Sbjct: 554 cggcgagcggcttggcgatg 535
>gb|AC154279.2| Mus musculus BAC clone RP24-271E12 from chromosome 17, complete sequence Length = 173729 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 tgctcttgaccacctccttg 497 |||||||||||||||||||| Sbjct: 78295 tgctcttgaccacctccttg 78276
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 563 cttcttgccggcgagcggcttggc 586 |||||||||||||| ||||||||| Sbjct: 580215 cttcttgccggcgatcggcttggc 580238
>gb|AC110569.8| Mus musculus chromosome 15, clone RP23-309J17, complete sequence Length = 213398 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 ttcttggagagcttcttgcc 571 |||||||||||||||||||| Sbjct: 152152 ttcttggagagcttcttgcc 152133
>gb|AC140051.10| Mus musculus chromosome 12, clone RP23-296J15, complete sequence Length = 205123 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 tttcttggagagcttcttgc 570 |||||||||||||||||||| Sbjct: 204114 tttcttggagagcttcttgc 204133
>gb|AC164002.4| Mus musculus chromosome 3, clone RP24-114A9, complete sequence Length = 198340 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 238 tgtattccgattccagtttctcct 261 ||||||| |||||||||||||||| Sbjct: 32735 tgtattctgattccagtttctcct 32712
>gb|AC161600.6| Mus musculus BAC clone RP23-350K3 from chromosome 3, complete sequence Length = 218929 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 651 ctctgctgctgctgtcgccg 670 |||||||||||||||||||| Sbjct: 134724 ctctgctgctgctgtcgccg 134743
>ref|XM_980207.1| PREDICTED: Mus musculus hypothetical protein LOC670249 (LOC670249), mRNA Length = 366 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 215 tcttcttcttctccgtcttc 196
>gb|AC121992.3| Mus musculus BAC clone RP24-300I17 from chromosome 12, complete sequence Length = 139943 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tttcttggagagcttcttgc 570 |||||||||||||||||||| Sbjct: 65039 tttcttggagagcttcttgc 65020
>emb|CT025566.7| Mouse DNA sequence from clone RP24-151A22 on chromosome 13, complete sequence Length = 149381 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 50299 tcttcttcttctccgtcttc 50280
>emb|AM039950.1| Xanthomonas campestris pv. vesicatoria plasmid pXCV38, complete genome Length = 38116 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 562 gcttcttgccggcgagcggcttgg 585 ||||||||||||| |||||||||| Sbjct: 1356 gcttcttgccggccagcggcttgg 1333
>ref|XM_390480.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10304.1) partial mRNA Length = 720 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 481 tcttgaccacctccttgaccccgcgctt 508 ||||||| ||||||||||| |||||||| Sbjct: 352 tcttgacgacctccttgacaccgcgctt 325
>gb|AC132141.3| Mus musculus BAC clone RP23-55P19 from chromosome 15, complete sequence Length = 168586 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 612 cttcttcttctccgtcttcc 631 |||||||||||||||||||| Sbjct: 115143 cttcttcttctccgtcttcc 115162
>gb|AC129305.4| Mus musculus BAC clone RP24-472F1 from chromosome 12, complete sequence Length = 159429 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 551 tttcttggagagcttcttgc 570 |||||||||||||||||||| Sbjct: 53125 tttcttggagagcttcttgc 53144
>gb|AC163298.4| Mus musculus BAC clone RP23-49H16 from chromosome 16, complete sequence Length = 141731 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 607 ggggtcttcttcttctccgtcttc 630 |||||||||||||||||| ||||| Sbjct: 115900 ggggtcttcttcttctccttcttc 115923
>emb|BX957269.5| Zebrafish DNA sequence from clone CH211-12C22 in linkage group 6, complete sequence Length = 174814 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 aaaatcatgctacataatacagac 146 ||||| |||||||||||||||||| Sbjct: 99735 aaaataatgctacataatacagac 99758
>emb|AL590785.7| Human DNA sequence from clone RP11-321C1 on chromosome 6, complete sequence Length = 188159 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 377 tgggacattggcttcctcacaaag 400 ||||||||||||||| |||||||| Sbjct: 174420 tgggacattggcttcatcacaaag 174443
>emb|AL157699.13| Human DNA sequence from clone RP13-55H22 on chromosome Xq12-21.1 Contains the PJA1 gene for praja 1, a high-mobility group nucleosome binding domain 1 (HMGN1) pseudogene, the 5' end of a novel gene and a CpG island, complete sequence Length = 119185 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 607 ggggtcttcttcttctccgtcttc 630 |||||||||||||||||| ||||| Sbjct: 112214 ggggtcttcttcttctccttcttc 112237
>emb|AL034424.9|HS257E24 Human DNA sequence from clone RP1-257E24 on chromosome 20q12-13.1 Contains the 3' end of the SLC13A3 gene for member 3 of solute carrier family 13 (sodium-dependent dicarboxylate transporter), the C20orf123 gene for chromosome 20 open reading frame 123, the 5' end of a novel zinc finger protein gene, ESTs, STSs and GSSs, complete sequence Length = 127735 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 tcatggttcctccaggctgg 176 |||||||||||||||||||| Sbjct: 29417 tcatggttcctccaggctgg 29398
>gb|AY064015.1| Arabidopsis thaliana putative N-terminal acetyltransferase (At1g80410) mRNA, complete cds Length = 3295 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 93 tcttcttcttctccgtcttc 112
>gb|AC124822.10| Mus musculus chromosome 3, clone RP24-217O18, complete sequence Length = 168065 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 tgtattccgattccagtttctcct 261 ||||||| |||||||||||||||| Sbjct: 77245 tgtattctgattccagtttctcct 77268
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70 Length = 198429 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 21712 tcttcttcttctccgtcttc 21731
>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project) Length = 97714 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 46743 tcttcttcttctccgtcttc 46762
>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project) Length = 101679 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 5239 tcttcttcttctccgtcttc 5258
>emb|BX005430.14| Zebrafish DNA sequence from clone DKEY-19E4 in linkage group 6, complete sequence Length = 209866 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 aaaatcatgctacataatacagac 146 ||||| |||||||||||||||||| Sbjct: 132888 aaaataatgctacataatacagac 132865
>gb|AC011907.4| Drosophila melanogaster 3L BAC RP98-18B21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 164597 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 ccatagtttctctgctgctgctgt 665 ||||||||| |||||||||||||| Sbjct: 87387 ccatagtttatctgctgctgctgt 87364
>gb|AE005802.1| Caulobacter crescentus CB15 section 128 of 359 of the complete genome Length = 10827 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 563 cttcttgccggcgagcggcttggc 586 |||||||||||||| ||||||||| Sbjct: 2798 cttcttgccggcgatcggcttggc 2775
>gb|AE005943.1| Caulobacter crescentus CB15 section 269 of 359 of the complete genome Length = 10106 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 568 tgccggcgagcggcttggcgatgg 591 ||||||||| |||||||||||||| Sbjct: 5384 tgccggcgaccggcttggcgatgg 5407
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 tcttgccggcgagcggcttg 584 |||||||||||||||||||| Sbjct: 536060 tcttgccggcgagcggcttg 536041
>ref|NM_167834.1| Drosophila melanogaster CG17090-RB, transcript variant B (CG17090), mRNA Length = 6295 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 ccatagtttctctgctgctgctgt 665 ||||||||| |||||||||||||| Sbjct: 3450 ccatagtttatctgctgctgctgt 3427
>ref|NM_138194.2| Drosophila melanogaster CG17090-RA, transcript variant A (CG17090), mRNA Length = 6215 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 ccatagtttctctgctgctgctgt 665 ||||||||| |||||||||||||| Sbjct: 3370 ccatagtttatctgctgctgctgt 3347
>gb|AF026205.2| Caenorhabditis elegans cosmid T23E7, complete sequence Length = 45635 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 19090 tcttcttcttctccgtcttc 19109
>ref|XM_938433.1| PREDICTED: Homo sapiens chromosome 20 open reading frame 123 (C20orf123), mRNA Length = 1948 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tcatggttcctccaggctgg 176 |||||||||||||||||||| Sbjct: 1757 tcatggttcctccaggctgg 1776
>ref|XM_496476.2| PREDICTED: Homo sapiens chromosome 20 open reading frame 123 (C20orf123), mRNA Length = 1948 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 tcatggttcctccaggctgg 176 |||||||||||||||||||| Sbjct: 1757 tcatggttcctccaggctgg 1776
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 563 cttcttgccggcgagcggcttggc 586 |||||||||||||| ||||||||| Sbjct: 2732367 cttcttgccggcgatcggcttggc 2732390
>gb|AC164112.2| Mus musculus BAC clone RP23-266E12 from chromosome 16, complete sequence Length = 171693 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 taatgcactatcttttttatctaa 38 ||||||||||| |||||||||||| Sbjct: 79520 taatgcactattttttttatctaa 79543
>gb|AY058785.1| Drosophila melanogaster SD08329 full length cDNA Length = 5670 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 ccatagtttctctgctgctgctgt 665 ||||||||| |||||||||||||| Sbjct: 2818 ccatagtttatctgctgctgctgt 2795
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 563 cttcttgccggcgagcggcttggc 586 |||||||||||||| ||||||||| Sbjct: 3096265 cttcttgccggcgatcggcttggc 3096288
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 tcttgccggcgagcggcttg 584 |||||||||||||||||||| Sbjct: 877977 tcttgccggcgagcggcttg 877958
>ref|NM_078449.3| Caenorhabditis elegans Neuropeptide-Like Protein family member (nlp-6) (nlp-6) mRNA, complete cds Length = 573 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 363 tcttcttcttctccgtcttc 382
>dbj|AK086516.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930033K23 product:unclassifiable, full insert sequence Length = 3340 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 tgctcttgaccacctccttg 497 |||||||||||||||||||| Sbjct: 1685 tgctcttgaccacctccttg 1666
>gb|AC139197.10| Mus musculus chromosome 15, clone RP24-119N11, complete sequence Length = 172693 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 ttcttggagagcttcttgcc 571 |||||||||||||||||||| Sbjct: 4311 ttcttggagagcttcttgcc 4292
>gb|AC148688.1| Macaca mulatta Major Histocompatibility Complex BAC MMU218K02, complete sequence Length = 182826 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 tcacaaagtatgggaagatg 412 |||||||||||||||||||| Sbjct: 181168 tcacaaagtatgggaagatg 181149
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 3926185 tcttcttcttctccgtcttc 3926204 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 1306808 tcttcttcttctccgtcttc 1306789
>gb|AY089970.1| Arabidopsis thaliana uracil phosphoribosyltransferase (uprt1) mRNA, complete cds Length = 1844 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 199 tcttcttcttctccgtcttc 218
>gb|AC097710.2| Homo sapiens BAC clone RP11-44H17 from 4, complete sequence Length = 156848 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 actatcttttttatctaata 40 |||||||||||||||||||| Sbjct: 50603 actatcttttttatctaata 50622
>gb|AC024706.6| Homo sapiens BAC clone RP11-119J20 from 4, complete sequence Length = 169557 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 caaaatcatgctacataata 141 |||||||||||||||||||| Sbjct: 5262 caaaatcatgctacataata 5281
>emb|BX833128.1|CNS09ZBX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL35ZD08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1706 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 233 tcttcttcttctccgtcttc 252
>gb|AC093610.2| Homo sapiens BAC clone RP11-725F23 from 2, complete sequence Length = 143604 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 17 atgcactatcttttttatctaataccaa 44 ||||||| |||||||| ||||||||||| Sbjct: 107425 atgcactctcttttttctctaataccaa 107452
>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete sequence Length = 132990 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 62404 tcttcttcttctccgtcttc 62385
>gb|AC018849.2|AC018849 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete sequence Length = 89811 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 83746 tcttcttcttctccgtcttc 83765
>gb|AY069587.1| Drosophila melanogaster LD33388 full insert cDNA Length = 2917 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 ccatagtttctctgctgctgctgt 665 ||||||||| |||||||||||||| Sbjct: 842 ccatagtttatctgctgctgctgt 819
>ref|XM_574611.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2700081O15 (LOC499309), mRNA Length = 2061 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 593 cgccagcgccacccggggtc 612 |||||||||||||||||||| Sbjct: 1126 cgccagcgccacccggggtc 1145
>gb|BT002336.1| Arabidopsis thaliana clone C104946 putative uridine kinase (At5g40870) mRNA, complete cds Length = 1492 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 139 tcttcttcttctccgtcttc 158
>dbj|AP005605.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1449_C01 Length = 192857 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 191402 tcttcttcttctccgtcttc 191421
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073J19 Length = 165174 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 136115 tcttcttcttctccgtcttc 136096
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 agagcttcttgccggcgagc 578 |||||||||||||||||||| Sbjct: 4437723 agagcttcttgccggcgagc 4437704
>gb|AC064865.6| Homo sapiens BAC clone RP11-436E1 from 2, complete sequence Length = 197164 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 84631 tcttcttcttctccgtcttc 84612
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 ggcgagcggcttggcgatgg 591 |||||||||||||||||||| Sbjct: 2677244 ggcgagcggcttggcgatgg 2677263 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 565 tcttgccggcgagcggcttg 584 |||||||||||||||||||| Sbjct: 227061 tcttgccggcgagcggcttg 227080
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1342_D02 Length = 125460 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 cggcgagcggcttggcgatg 590 |||||||||||||||||||| Sbjct: 56118 cggcgagcggcttggcgatg 56099
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0462E11 Length = 166115 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 13482 tcttcttcttctccgtcttc 13501
>dbj|AB011477.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHK7 Length = 78181 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 49605 tcttcttcttctccgtcttc 49624
>dbj|AK118658.1| Arabidopsis thaliana At4g29000 mRNA for putative transcription factor, complete cds, clone: RAFL19-93-A20 Length = 2721 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 120 tcttcttcttctccgtcttc 139
>dbj|AK118131.1| Arabidopsis thaliana At1g80410 mRNA for putative N-terminal acetyltransferase, complete cds, clone: RAFL19-43-D16 Length = 3153 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 97 tcttcttcttctccgtcttc 116
>dbj|AK071209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087H13, full insert sequence Length = 1309 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 571 cggcgagcggcttggcgatg 590 |||||||||||||||||||| Sbjct: 554 cggcgagcggcttggcgatg 535
>dbj|AK067378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013102K23, full insert sequence Length = 2545 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 120 tcttcttcttctccgtcttc 139
>gb|AE001439.1| Helicobacter pylori J99, complete genome Length = 1643831 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gtcatcaccaacacgcagca 316 |||||||||||||||||||| Sbjct: 1549798 gtcatcaccaacacgcagca 1549817
>dbj|AK063293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-E07, full insert sequence Length = 2398 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 611 tcttcttcttctccgtcttc 630 |||||||||||||||||||| Sbjct: 128 tcttcttcttctccgtcttc 147
>gb|AE003468.3| Drosophila melanogaster chromosome 3L, section 2 of 83 of the complete sequence Length = 307657 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 642 ccatagtttctctgctgctgctgt 665 ||||||||| |||||||||||||| Sbjct: 252626 ccatagtttatctgctgctgctgt 252603
>gb|AC163629.5| Mus musculus BAC clone RP24-542G7 from chromosome 17, complete sequence Length = 198902 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 478 tgctcttgaccacctccttg 497 |||||||||||||||||||| Sbjct: 12983 tgctcttgaccacctccttg 13002 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,609,578 Number of Sequences: 3902068 Number of extensions: 7609578 Number of successful extensions: 167870 Number of sequences better than 10.0: 124 Number of HSP's better than 10.0 without gapping: 125 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 166933 Number of HSP's gapped (non-prelim): 920 length of query: 670 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 647 effective length of database: 17,143,297,704 effective search space: 11091713614488 effective search space used: 11091713614488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)