>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 35.0 bits (79), Expect = 0.22
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 279 TTATTKMGWGGGRGRVKELIVSFSAVASG 365
           TT+T K+ W G  G+VK+ +V+++ VA G
Sbjct: 826 TTSTMKLSWSGAPGKVKQYLVTYTPVAGG 854

>ATP11_SCHPO (P87127) Protein atp11, mitochondrial precursor|
          Length = 286

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
 Frame = -2

Query: 696 TGLEDYKARGTQASPYCTVTHFTEFAETKDTVLVRGDVVFTSKLTDAEAKCLLETAHSFY 517
           T L +YK +G+ A+P+  + HF +    K   L+R       KL+  + + L+     FY
Sbjct: 190 TSLLEYKLKGSYAAPHTIMLHFADLLNLKGITLMRCQFE-PKKLSANDVQLLVLAIQKFY 248

Query: 516 -------LNDVRYKLVERFNKETRDFEFKDVLQALEM 427
                  L   R  L+  F+K   DF+   V   ++M
Sbjct: 249 NASENTPLGKERLALLAAFSKGA-DFDLHKVATHMDM 284

>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 279 TTATTKMGWGGGRGRVKELIVSFSAVASG 365
           TT+T K+ W    G+VK+ +V+++  A G
Sbjct: 830 TTSTLKLSWSRAPGKVKQYLVTYTPAAGG 858

>RPOC_DECAR (Q47JA9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1403

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 544  SFRDSTLVLPERCAVQARGAFQQGNTRFRVQRR-PSGA*NAVHVSRDVKPSCDD*ASQHG 368
            SF+++T VL E   +  R   +       V R  P+G   A H SR  + + +D A+   
Sbjct: 1327 SFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAFHRSRKAQLAGEDIAASRQ 1386

Query: 367  EPEATAENETMSS 329
              EATAEN T  +
Sbjct: 1387 IEEATAENTTQEA 1399

>HSP1_TRAPL (Q7JHM9) Sperm protamine P1|
          Length = 50

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 631 HRVCRNQGYSAC--PRRRCLHQQTNRCR 554
           +R CR+Q  S C  PRRRC  ++   CR
Sbjct: 3   YRCCRSQSRSRCCRPRRRCRRRRRRSCR 30

>HSP1_TRAPH (Q8MHZ2) Sperm protamine P1|
          Length = 49

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 631 HRVCRNQGYSAC--PRRRCLHQQTNRCR 554
           +R CR+Q  S C  PRRRC  ++   CR
Sbjct: 3   YRCCRSQSRSRCCRPRRRCRRRRRRSCR 30

>HSP1_TRAOB (Q7JIX9) Sperm protamine P1|
          Length = 50

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 631 HRVCRNQGYSAC--PRRRCLHQQTNRCR 554
           +R CR+Q  S C  PRRRC  ++   CR
Sbjct: 3   YRCCRSQSRSRCCRPRRRCRRRRRRSCR 30

>HSP1_TRAGE (Q7JHM8) Sperm protamine P1|
          Length = 50

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 631 HRVCRNQGYSAC--PRRRCLHQQTNRCR 554
           +R CR+Q  S C  PRRRC  ++   CR
Sbjct: 3   YRCCRSQSRSRCCRPRRRCRRRRRRSCR 30

>HSP1_TRAFR (Q9GKQ4) Sperm protamine P1|
          Length = 50

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 631 HRVCRNQGYSAC--PRRRCLHQQTNRCR 554
           +R CR+Q  S C  PRRRC  ++   CR
Sbjct: 3   YRCCRSQSRSRCCRPRRRCRRRRRRSCR 30

>HSP1_TRACR (Q9GKQ2) Sperm protamine P1|
          Length = 50

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 631 HRVCRNQGYSAC--PRRRCLHQQTNRCR 554
           +R CR+Q  S C  PRRRC  ++   CR
Sbjct: 3   YRCCRSQSRSRCCRPRRRCRRRRRRSCR 30

>PHX2A_RAT (Q62782) Paired mesoderm homeobox protein 2A (Paired-like homeobox|
           2A) (Aristaless homeobox protein homolog) (ARIX1
           homeodomain protein)
          Length = 281

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 20/75 (26%), Positives = 30/75 (40%)
 Frame = -1

Query: 484 FQQGNTRFRVQRRPSGA*NAVHVSRDVKPSCDD*ASQHGEPEATAENETMSSFTLPLPPP 305
           FQ    +FR Q R + A  A   +   K      +      E+T  +   S+ +LP PPP
Sbjct: 138 FQNRRAKFRKQERAATAKGAAGATGAKKGEARCSSEDDDSKESTCSHTPDSTASLPPPPP 197

Query: 304 HPIFVVAVVSRKTTP 260
            P     ++S    P
Sbjct: 198 APSLASPLLSPSPLP 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,062,730
Number of Sequences: 219361
Number of extensions: 2042866
Number of successful extensions: 5524
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5514
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)