ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14k21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482967.1| Oryza sativa (japonica cultivar-group), mRNA 82 3e-12
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
3dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
4dbj|AK099704.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 3e-12
5gb|AY108086.1| Zea mays PCO075553 mRNA sequence 60 1e-05
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
7dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic D... 58 4e-05
8gb|AC139718.1| Homo sapiens BAC clone RP11-269F21 from 4, comple... 46 0.14
9emb|AL731718.30| Mouse DNA sequence from clone RP23-167O21 on ch... 42 2.2
10emb|BX511137.14| Zebrafish DNA sequence from clone DKEY-192A11 i... 42 2.2
11dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.2
12emb|AL954672.9| Zebrafish DNA sequence from clone CH211-237K3 in... 42 2.2
13ref|XM_659290.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 8.8
14gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome ... 40 8.8
15gb|BC040255.1| Mus musculus RIKEN cDNA 5830417I10 gene, mRNA (cD... 40 8.8
16gb|AC124190.4| Mus musculus BAC clone RP23-267M9 from 3, complet... 40 8.8
17gb|AC009022.10| Homo sapiens chromosome 16 clone RP11-106J23, co... 40 8.8
18gb|AE004327.1| Vibrio cholerae O1 biovar eltor str. N16961 chrom... 40 8.8
19gb|AC026877.15| Homo sapiens 3 BAC RP11-550F7 (Roswell Park Canc... 40 8.8
20gb|AC128687.10| Homo sapiens 3 BAC RP11-255E6 (Roswell Park Canc... 40 8.8
21emb|Z33881.1|CHBLG C.hircus gene encoding beta-lactoglobulin 40 8.8
22emb|X12817.1|OALGB Ovis aries beta-lactoglobulin gene 40 8.8
23emb|BX571867.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 8.8
24emb|CR627403.1| Homo sapiens genomic DNA; cDNA DKFZp686I0981 (fr... 40 8.8
25emb|BX537453.3|RN86L3 Rattus norvegicus chromosome 1 BAC RP32-86... 40 8.8
26gb|DQ417346.1| Capra hircus beta-lactoglobulin gene, promoter re... 40 8.8
27dbj|AK127526.1| Homo sapiens cDNA FLJ45619 fis, clone BRTHA3027318 40 8.8
28gb|AE010252.1| Pyrococcus furiosus DSM 3638, section 127 of 173 ... 40 8.8
29gb|AC008846.7| Homo sapiens chromosome 5 clone CTD-2165G8, compl... 40 8.8
30gb|AC096636.1| Homo sapiens chromosome 1 clone RP11-75I2, comple... 40 8.8
31gb|AC154518.2| Mus musculus BAC clone RP23-211K12 from chromosom... 40 8.8
32gb|AC025471.6| Homo sapiens chromosome 5 clone RP11-138C1, compl... 40 8.8
33dbj|AK036207.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 8.8
34dbj|AK033977.1| Mus musculus adult male diencephalon cDNA, RIKEN... 40 8.8
35gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Can... 40 8.8
36gb|AC112932.19| Mus musculus chromosome 3, clone RP24-512D23, co... 40 8.8
37emb|AJ292058.1|CHI292058 Capra hircus partial gene for beta-lact... 40 8.8
38gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296... 40 8.8
39dbj|AP004807.1| Elops saurus mitochondrial DNA, complete genome 40 8.8
40emb|X99944.1|STYSCQRS S.typhimurium ssaQ, ssaR, ssaS, ssaT and s... 40 8.8
41gb|AC110170.6| Mus musculus chromosome 12, clone RP23-301G24, co... 40 8.8
42gb|AC135635.5| Mus musculus BAC clone RP23-245M20 from 3, comple... 40 8.8
43emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chro... 40 8.8
44emb|X68105.1|OABLGPR O.aries DNA for BLG gene promoter region 40 8.8
45emb|AL833775.7| Mouse DNA sequence from clone RP23-135L5 on chro... 40 8.8
46gb|M32233.1|SHPBLGA1 Ovis beta-lactoglobulin (BGLA) gene, exons ... 40 8.8 
>ref|XM_482967.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3226

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 88/102 (86%), Gaps = 5/102 (4%)
 Strand = Plus / Minus

                                                                        
Query: 86   caacccaaaccctccacat--caataaaatgtttgggcggtcttttctctagccgatctt 143
            |||||||||||||||||||  ||||||||||||||||| ||| |||| ||||||||||| 
Sbjct: 3154 caacccaaaccctccacatgtcaataaaatgtttgggccgtcctttccctagccgatctc 3095

                                                      
Query: 144  ctcaacaagacactgcccctggcttctccagggtcatgctca 185
            ||||| || |||||     ||||||||||||| |||||||||
Sbjct: 3094 ctcaataaaacact---attggcttctccaggatcatgctca 3056
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 88/102 (86%), Gaps = 5/102 (4%)
 Strand = Plus / Plus

                                                                            
Query: 86       caacccaaaccctccacat--caataaaatgtttgggcggtcttttctctagccgatctt 143
                |||||||||||||||||||  ||||||||||||||||| ||| |||| ||||||||||| 
Sbjct: 23586532 caacccaaaccctccacatgtcaataaaatgtttgggccgtcctttccctagccgatctc 23586591

                                                          
Query: 144      ctcaacaagacactgcccctggcttctccagggtcatgctca 185
                ||||| || |||||     ||||||||||||| |||||||||
Sbjct: 23586592 ctcaataaaacact---attggcttctccaggatcatgctca 23586630
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>dbj|AP003917.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1666_A04
          Length = 90097

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 88/102 (86%), Gaps = 5/102 (4%)
 Strand = Plus / Plus

                                                                         
Query: 86    caacccaaaccctccacat--caataaaatgtttgggcggtcttttctctagccgatctt 143
             |||||||||||||||||||  ||||||||||||||||| ||| |||| ||||||||||| 
Sbjct: 66307 caacccaaaccctccacatgtcaataaaatgtttgggccgtcctttccctagccgatctc 66366

                                                       
Query: 144   ctcaacaagacactgcccctggcttctccagggtcatgctca 185
             ||||| || |||||     ||||||||||||| |||||||||
Sbjct: 66367 ctcaataaaacact---attggcttctccaggatcatgctca 66405
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>dbj|AK099704.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075H22, full
            insert sequence
          Length = 3225

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 88/102 (86%), Gaps = 5/102 (4%)
 Strand = Plus / Minus

                                                                        
Query: 86   caacccaaaccctccacat--caataaaatgtttgggcggtcttttctctagccgatctt 143
            |||||||||||||||||||  ||||||||||||||||| ||| |||| ||||||||||| 
Sbjct: 3153 caacccaaaccctccacatgtcaataaaatgtttgggccgtcctttccctagccgatctc 3094

                                                      
Query: 144  ctcaacaagacactgcccctggcttctccagggtcatgctca 185
            ||||| || |||||     ||||||||||||| |||||||||
Sbjct: 3093 ctcaataaaacact---attggcttctccaggatcatgctca 3055
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>gb|AY108086.1| Zea mays PCO075553 mRNA sequence
          Length = 544

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 79/94 (84%), Gaps = 1/94 (1%)
 Strand = Plus / Minus

                                                                       
Query: 89  cccaaaccctcca-catcaataaaatgtttgggcggtcttttctctagccgatcttctca 147
           |||||||||| || |||||||||||||| ||||||||| | || ||||  | ||||||||
Sbjct: 421 cccaaaccctgcaacatcaataaaatgtctgggcggtcctgtccctagatggtcttctca 362

                                             
Query: 148 acaagacactgcccctggcttctccagggtcatg 181
           | || |||| |||||||| ||  |||||||||||
Sbjct: 361 ataaaacaccgcccctggtttgcccagggtcatg 328
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                            
Query: 469      tgctggttgaattccttgtgctttcgctgctatctgtgctcacggtgctgtgtgacccag 528
                ||||||| |||||||||||||| ||  |||||||  | || |  ||||||  |||||| |
Sbjct: 17546286 tgctggtcgaattccttgtgctgtcagtgctatcactactgaaagtgctggttgaccctg 17546345

                                                     
Query: 529      catcagagttactgaacaacgatgagctctcacttgg 565
                |||||||||| ||||||| ||| ||||| ||||||||
Sbjct: 17546346 catcagagttgctgaacagcgaggagctgtcacttgg 17546382
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>dbj|AP005755.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0019B14
          Length = 127570

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 80/97 (82%)
 Strand = Plus / Plus

                                                                          
Query: 469    tgctggttgaattccttgtgctttcgctgctatctgtgctcacggtgctgtgtgacccag 528
              ||||||| |||||||||||||| ||  |||||||  | || |  ||||||  |||||| |
Sbjct: 110464 tgctggtcgaattccttgtgctgtcagtgctatcactactgaaagtgctggttgaccctg 110523

                                                   
Query: 529    catcagagttactgaacaacgatgagctctcacttgg 565
              |||||||||| ||||||| ||| ||||| ||||||||
Sbjct: 110524 catcagagttgctgaacagcgaggagctgtcacttgg 110560
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>gb|AC139718.1| Homo sapiens BAC clone RP11-269F21 from 4, complete sequence
          Length = 127342

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 15     actctggctcttaggaattgcccattt 41
              |||||||||| ||||||||||||||||
Sbjct: 120205 actctggctcataggaattgcccattt 120179
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>emb|AL731718.30| Mouse DNA sequence from clone RP23-167O21 on chromosome 4, complete
             sequence
          Length = 133646

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 411   gggcctcccagatacatctga 431
             |||||||||||||||||||||
Sbjct: 61895 gggcctcccagatacatctga 61875
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>emb|BX511137.14| Zebrafish DNA sequence from clone DKEY-192A11 in linkage group 7,
              complete sequence
          Length = 214145

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 315    ctctcttcatccacctcctggcctg 339
              |||||||| ||||||||||||||||
Sbjct: 143934 ctctcttcttccacctcctggcctg 143958
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>dbj|AP000793.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-812L3, complete
             sequences
          Length = 169152

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 11    tggaactctggctcttaggaa 31
             |||||||||||||||||||||
Sbjct: 41972 tggaactctggctcttaggaa 41952
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>emb|AL954672.9| Zebrafish DNA sequence from clone CH211-237K3 in linkage group 7,
            complete sequence
          Length = 180588

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 315  ctctcttcatccacctcctggcctg 339
            |||||||| ||||||||||||||||
Sbjct: 9338 ctctcttcttccacctcctggcctg 9314
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>ref|XM_659290.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN6778.2), mRNA
          Length = 1437

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 356 ggcagatctcgaccgagaat 375
           ||||||||||||||||||||
Sbjct: 32  ggcagatctcgaccgagaat 51
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>gb|AC127377.4| Mus musculus BAC clone RP23-51N3 from chromosome 3, complete sequence
          Length = 195767

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 615   ctacgggtgaggttatctgt 634
             ||||||||||||||||||||
Sbjct: 39559 ctacgggtgaggttatctgt 39578
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>gb|BC040255.1| Mus musculus RIKEN cDNA 5830417I10 gene, mRNA (cDNA clone
            IMAGE:5042894), with apparent retained intron
          Length = 3898

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 615  ctacgggtgaggttatctgt 634
            ||||||||||||||||||||
Sbjct: 1536 ctacgggtgaggttatctgt 1555
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>gb|AC124190.4| Mus musculus BAC clone RP23-267M9 from 3, complete sequence
          Length = 167681

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 316 tctcttcatccacctcctgg 335
           ||||||||||||||||||||
Sbjct: 210 tctcttcatccacctcctgg 191
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>gb|AC009022.10| Homo sapiens chromosome 16 clone RP11-106J23, complete sequence
          Length = 190577

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    cttgcatttctggaactctg 20
            ||||||||||||||||||||
Sbjct: 5680 cttgcatttctggaactctg 5699
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>gb|AE004327.1| Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, section 235
            of 251 of the complete chromosome
          Length = 16140

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  atcaataaaatgtttgggcg 122
            ||||||||||||||||||||
Sbjct: 4425 atcaataaaatgtttgggcg 4406
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>gb|AC026877.15| Homo sapiens 3 BAC RP11-550F7 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 198824

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tgcctatattgttctgttaa 217
             ||||||||||||||||||||
Sbjct: 31443 tgcctatattgttctgttaa 31424
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>gb|AC128687.10| Homo sapiens 3 BAC RP11-255E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92345

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   acctctcttcatccacctcc 332
             ||||||||||||||||||||
Sbjct: 38793 acctctcttcatccacctcc 38774
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>emb|Z33881.1|CHBLG C.hircus gene encoding beta-lactoglobulin
          Length = 8088

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 342  gagctggtgcccaaggcaga 361
            ||||||||||||||||||||
Sbjct: 1778 gagctggtgcccaaggcaga 1797
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>emb|X12817.1|OALGB Ovis aries beta-lactoglobulin gene
          Length = 7379

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 342 gagctggtgcccaaggcaga 361
           ||||||||||||||||||||
Sbjct: 427 gagctggtgcccaaggcaga 446
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>emb|BX571867.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              9/17
          Length = 336609

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 40     tttcatatttccaccgcaactaga 63
              ||||||||||||||| ||||||||
Sbjct: 194830 tttcatatttccaccccaactaga 194853
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>emb|CR627403.1| Homo sapiens genomic DNA; cDNA DKFZp686I0981 (from clone
           DKFZp686I0981)
          Length = 3910

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 tgcctatattgttctgttaa 217
           ||||||||||||||||||||
Sbjct: 676 tgcctatattgttctgttaa 695
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>emb|BX537453.3|RN86L3 Rattus norvegicus chromosome 1 BAC RP32-86L3, complete sequence
          Length = 154099

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  cctctcttcatccacctcct 333
            ||||||||||||||||||||
Sbjct: 4973 cctctcttcatccacctcct 4992
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>gb|DQ417346.1| Capra hircus beta-lactoglobulin gene, promoter region and partial cds
          Length = 3883

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 342  gagctggtgcccaaggcaga 361
            ||||||||||||||||||||
Sbjct: 3463 gagctggtgcccaaggcaga 3482
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>dbj|AK127526.1| Homo sapiens cDNA FLJ45619 fis, clone BRTHA3027318
          Length = 3617

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 156 ctgcccctggcttctccagg 175
           ||||||||||||||||||||
Sbjct: 526 ctgcccctggcttctccagg 545
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>gb|AE010252.1| Pyrococcus furiosus DSM 3638, section 127 of 173 of the complete
            genome
          Length = 10710

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  atgagctggtgcccaaggca 359
            ||||||||||||||||||||
Sbjct: 9429 atgagctggtgcccaaggca 9448
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>gb|AC008846.7| Homo sapiens chromosome 5 clone CTD-2165G8, complete sequence
          Length = 92740

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 514   tgctgtgtgacccagcatca 533
             ||||||||||||||||||||
Sbjct: 74817 tgctgtgtgacccagcatca 74836
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>gb|AC096636.1| Homo sapiens chromosome 1 clone RP11-75I2, complete sequence
          Length = 153327

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    ctgcccctggcttctccagg 175
              ||||||||||||||||||||
Sbjct: 129521 ctgcccctggcttctccagg 129540
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>gb|AC154518.2| Mus musculus BAC clone RP23-211K12 from chromosome 16, complete sequence
          Length = 177189

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     agataataacagaagctaca 80
              ||||||||||||||||||||
Sbjct: 120864 agataataacagaagctaca 120845
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>gb|AC025471.6| Homo sapiens chromosome 5 clone RP11-138C1, complete sequence
          Length = 148607

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 514  tgctgtgtgacccagcatca 533
            ||||||||||||||||||||
Sbjct: 2652 tgctgtgtgacccagcatca 2671
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>dbj|AK036207.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:9630045L01
            product:unclassifiable, full insert sequence
          Length = 3630

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 615  ctacgggtgaggttatctgt 634
            ||||||||||||||||||||
Sbjct: 3388 ctacgggtgaggttatctgt 3369
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>dbj|AK033977.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330131K01 product:unclassifiable, full
            insert sequence
          Length = 3691

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 615  ctacgggtgaggttatctgt 634
            ||||||||||||||||||||
Sbjct: 3449 ctacgggtgaggttatctgt 3430
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>gb|AC139451.7| Homo sapiens 3 BAC RP13-1056D16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 119043

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 248   caagggtgagctttcaccac 267
             ||||||||||||||||||||
Sbjct: 13180 caagggtgagctttcaccac 13199
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>gb|AC112932.19| Mus musculus chromosome 3, clone RP24-512D23, complete sequence
          Length = 171097

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 75    gctacattattcaacccaaa 94
             ||||||||||||||||||||
Sbjct: 68842 gctacattattcaacccaaa 68861
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>emb|AJ292058.1|CHI292058 Capra hircus partial gene for beta-lactoglobulin, promoter and exon
           1
          Length = 532

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 342 gagctggtgcccaaggcaga 361
           ||||||||||||||||||||
Sbjct: 26  gagctggtgcccaaggcaga 45
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>gb|AC009060.7|AC009060 Homo sapiens chromosome 16 clone RP11-296I10, complete sequence
          Length = 180596

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     cttgcatttctggaactctg 20
             ||||||||||||||||||||
Sbjct: 38834 cttgcatttctggaactctg 38815
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>dbj|AP004807.1| Elops saurus mitochondrial DNA, complete genome
          Length = 16120

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 259   tttcaccaccctcaacccaacccc 282
             |||||||||||||||||| |||||
Sbjct: 12094 tttcaccaccctcaaccccacccc 12117
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>emb|X99944.1|STYSCQRS S.typhimurium ssaQ, ssaR, ssaS, ssaT and ssaU genes
          Length = 5484

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   catatttccaccgcaactag 62
            ||||||||||||||||||||
Sbjct: 3808 catatttccaccgcaactag 3789
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>gb|AC110170.6| Mus musculus chromosome 12, clone RP23-301G24, complete sequence
          Length = 173081

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   ttccacagacctctcttcat 324
             ||||||||||||||||||||
Sbjct: 13348 ttccacagacctctcttcat 13329
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>gb|AC135635.5| Mus musculus BAC clone RP23-245M20 from 3, complete sequence
          Length = 192485

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 316   tctcttcatccacctcctgg 335
             ||||||||||||||||||||
Sbjct: 24134 tctcttcatccacctcctgg 24153
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>emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chromosome 2, complete
             sequence
          Length = 176808

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 533   agagttactgaacaacgatg 552
             ||||||||||||||||||||
Sbjct: 87038 agagttactgaacaacgatg 87019
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>emb|X68105.1|OABLGPR O.aries DNA for BLG gene promoter region
          Length = 4236

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 342  gagctggtgcccaaggcaga 361
            ||||||||||||||||||||
Sbjct: 3834 gagctggtgcccaaggcaga 3853
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>emb|AL833775.7| Mouse DNA sequence from clone RP23-135L5 on chromosome 4, complete
             sequence
          Length = 194640

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 298   acctttgttccacagacctctcttcatccacc 329
             |||||| ||||||||| || ||||||||||||
Sbjct: 66149 accttttttccacagagctgtcttcatccacc 66118
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>gb|M32233.1|SHPBLGA1 Ovis beta-lactoglobulin (BGLA) gene, exons 1 and 2, clone SS12
          Length = 1769

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 342 gagctggtgcccaaggcaga 361
           ||||||||||||||||||||
Sbjct: 447 gagctggtgcccaaggcaga 466


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,878,243
Number of Sequences: 3902068
Number of extensions: 5878243
Number of successful extensions: 107952
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107817
Number of HSP's gapped (non-prelim): 129
length of query: 647
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 624
effective length of database: 17,143,297,704
effective search space: 10697417767296
effective search space used: 10697417767296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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