ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14k12 |
|---|---|
| Clone Library Name | barley_pub |
>NSF_ARATH (Q9M0Y8) Vesicle-fusing ATPase (EC 3.6.4.6) (Vesicular-fusion protein| NSF) (N-ethylmaleimide sensitive fusion protein) Length = 742 Score = 213 bits (542), Expect = 4e-55 Identities = 107/159 (67%), Positives = 125/159 (78%) Frame = -1 Query: 678 VFEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTS 499 VFEDAYKS S EF+AIGPRFSN+ISQTLMVLLKR+PPKGK LLV GTTS Sbjct: 582 VFEDAYKSPMSIIILDDIERLLEFIAIGPRFSNIISQTLMVLLKRLPPKGKKLLVFGTTS 641 Query: 498 ETTFLDSIGMSGVFSVTYEVPKLTKEDAAKVLRHLNVFDEGDIETAAEALDDMPIKKLYT 319 E TFL+S+G+S FSVT+ VP L KEDA KVL LN+F E D+++AAEAL+DMPIKK+Y Sbjct: 642 EVTFLESVGISDCFSVTHSVPTLQKEDAKKVLNQLNLFSEDDVDSAAEALNDMPIKKIYM 701 Query: 318 LVEMAAQGPQGGSAEAIYAGEEKIDLNHFFSILSDIIRY 202 L+EMAAQG GGSAEAIYAG EKI++NHF+ L D IR+ Sbjct: 702 LIEMAAQGENGGSAEAIYAGREKININHFYDCLGDFIRF 740
>NSF_MOUSE (P46460) Vesicle-fusing ATPase (EC 3.6.4.6) (Vesicular-fusion| protein NSF) (N-ethylmaleimide sensitive fusion protein) (NEM-sensitive fusion protein) (SKD2 protein) Length = 744 Score = 93.2 bits (230), Expect = 6e-19 Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 5/132 (3%) Frame = -1 Query: 678 VFEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTS 499 +F+DAYKSQ S ++V IGPRFSNL+ Q L+VLLK+ PP+G+ LL+IGTTS Sbjct: 588 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 647 Query: 498 ETTFLDSIGMSGVFSVTYEVPKL-TKEDAAKVLRHLNVFDEGDIETAAEALDD----MPI 334 L + M FS T VP + T E + L L F + + T A+ + + I Sbjct: 648 RKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGI 707 Query: 333 KKLYTLVEMAAQ 298 KKL L+EM+ Q Sbjct: 708 KKLLMLIEMSLQ 719
>NSF_CRIGR (P18708) Vesicle-fusing ATPase (EC 3.6.4.6) (Vesicular-fusion| protein NSF) (N-ethylmaleimide sensitive fusion protein) (NEM-sensitive fusion protein) Length = 744 Score = 93.2 bits (230), Expect = 6e-19 Identities = 55/132 (41%), Positives = 75/132 (56%), Gaps = 5/132 (3%) Frame = -1 Query: 678 VFEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTS 499 +F+DAYKSQ S ++V IGPRFSNL+ Q L+VLLK+ PP+G+ LL+IGTTS Sbjct: 588 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 647 Query: 498 ETTFLDSIGMSGVFSVTYEVPKL-TKEDAAKVLRHLNVFDEGDIETAAEALDD----MPI 334 L + M FS T VP + T E + L L F + + T A+ + + I Sbjct: 648 RKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGI 707 Query: 333 KKLYTLVEMAAQ 298 KKL L+EM+ Q Sbjct: 708 KKLLMLIEMSLQ 719
>NSF_HUMAN (P46459) Vesicle-fusing ATPase (EC 3.6.4.6) (Vesicular-fusion| protein NSF) (N-ethylmaleimide sensitive fusion protein) (NEM-sensitive fusion protein) Length = 744 Score = 90.9 bits (224), Expect = 3e-18 Identities = 54/132 (40%), Positives = 74/132 (56%), Gaps = 5/132 (3%) Frame = -1 Query: 678 VFEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTS 499 +F+DAYKSQ S ++V IGPRFSNL+ Q L+VLLK+ PP+G+ LL+IGTTS Sbjct: 588 IFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTS 647 Query: 498 ETTFLDSIGMSGVFSVTYEVPKL-TKEDAAKVLRHLNVFDEGDIETAAEALDD----MPI 334 L + M FS T VP + T E + L L + + T A+ + + I Sbjct: 648 RKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGNLKDKERTTIAQQVKGKKVWIGI 707 Query: 333 KKLYTLVEMAAQ 298 KKL L+EM+ Q Sbjct: 708 KKLLMLIEMSLQ 719
>NSF1_DROME (P46461) Vesicular-fusion protein Nsf1 (N-ethylmaleimide-sensitive| fusion protein 1) (NEM-sensitive fusion protein 1) (dNsf-1) (Protein comatose) Length = 745 Score = 85.1 bits (209), Expect = 2e-16 Identities = 49/139 (35%), Positives = 78/139 (56%), Gaps = 5/139 (3%) Frame = -1 Query: 678 VFEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTS 499 +F+DAY+S S ++ +IGPR+SN+ Q L+VLLK+ PPKG+ LL++ T+S Sbjct: 588 IFDDAYRSMLSCIVVDNVERLLDYGSIGPRYSNMTLQALLVLLKKQPPKGRKLLILCTSS 647 Query: 498 ETTFLDSIGMSGVFSVTYEVPKLTKED-AAKVLRHLNVFDEGDIETAAEALDD----MPI 334 L+ + M F+ VP L+K D VL + ++F +G+I+ + + + I Sbjct: 648 RREVLEEMEMLTAFTSVLHVPNLSKPDHVLAVLENTDIFSKGEIQAIGKKMAGKRVFIGI 707 Query: 333 KKLYTLVEMAAQGPQGGSA 277 KKL L++MA Q Q A Sbjct: 708 KKLLGLIDMARQTEQSQRA 726
>SEC18_SCHPO (Q9P7Q4) Vesicular-fusion protein SEC18 homolog| Length = 792 Score = 76.6 bits (187), Expect = 6e-14 Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Frame = -1 Query: 678 VFEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTS 499 VFED+YKS S ++V IGPRFSN + QTLMVL K+ PPKG LL++ TTS Sbjct: 637 VFEDSYKSPLSVIVVDEIERIIDWVPIGPRFSNTLLQTLMVLFKKQPPKGHRLLILATTS 696 Query: 498 ETTFLDSIGMSGVFSVTYEVPKLTK-EDAAKVLRHLNVFDEGDI 370 E T L + M+ F VP ++ + ++++ ++ F + ++ Sbjct: 697 ERTMLSRMDMTQSFDAEIAVPNVSNVTELDRIIQSIDSFADSNV 740
>NSF2_DROME (P54351) Vesicular-fusion protein Nsf2 (N-ethylmaleimide-sensitive| fusion protein 2) (NEM-sensitive fusion protein 2) (dNsf-2) Length = 752 Score = 73.2 bits (178), Expect = 7e-13 Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Frame = -1 Query: 678 VFEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTS 499 +F+DAY+S S ++ IGPR+SNL Q L+VLLK+ PPKG+ LL++ T+S Sbjct: 593 IFDDAYRSTLSCIVVDNVERLLDYGPIGPRYSNLTLQALLVLLKKQPPKGRKLLILCTSS 652 Query: 498 ETTFLDSIGMSGVFSVTYEVPKL-TKEDAAKVLRHLNVFDEGDIETAAEALDD----MPI 334 L+ + M F+ V L T E VL ++F ++++ A + + I Sbjct: 653 RRDVLEEMEMLSAFTSVLHVSNLSTPEHVLAVLDDSDLFSPEELQSIARKMAGKRLCIGI 712 Query: 333 KKLYTLVEMAAQ 298 KKL L++M Q Sbjct: 713 KKLLALIDMIRQ 724
>NSF_CAEEL (Q94392) Vesicle-fusing ATPase (EC 3.6.4.6) (Vesicular-fusion protein| NSF) (N-ethylmaleimide sensitive fusion protein) (NEM-sensitive fusion protein) Length = 824 Score = 72.0 bits (175), Expect = 2e-12 Identities = 44/136 (32%), Positives = 66/136 (48%), Gaps = 10/136 (7%) Frame = -1 Query: 675 FEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTSE 496 FEDA +S+ S ++ +GPR+SNL+ Q L+VLL PP G L VI T+S+ Sbjct: 666 FEDAKRSKLSVLLIDNLERLIDYHPVGPRYSNLVIQALLVLLNAPPPAGHRLFVIATSSD 725 Query: 495 TTFLDSIGMSGVFSVTYEVPKLTKE-DAAKVLRHLNVFDEGDIE---------TAAEALD 346 FL +G+ VF ++PKLT V++ N++ + + E Sbjct: 726 RMFLRDMGLMDVFGDVIDIPKLTTAGQMMNVIQESNIYSDDQLPMIEQKLASICRGEGFH 785 Query: 345 DMPIKKLYTLVEMAAQ 298 + IK L L+E A Q Sbjct: 786 GVGIKHLLELIESARQ 801
>SEC18_YEAST (P18759) Vesicular-fusion protein SEC18| Length = 758 Score = 63.5 bits (153), Expect = 5e-10 Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 7/131 (5%) Frame = -1 Query: 675 FEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTSE 496 F DAYKS + ++V IGPRFSN I Q L V LKR PP+ + LL++ TTS Sbjct: 610 FRDAYKSPLNILVIDSLETLVDWVPIGPRFSNNILQMLKVALKRKPPQDRRLLIMTTTSA 669 Query: 495 TTFLDSIGMSGVFSVTYEVPKLTK-EDAAKVLRHLNVFDE-GDIETAAEALDDMP----- 337 + L + + F VP +T ++ V+ N D+ G ++ E P Sbjct: 670 YSVLQQMDILSCFDNEIAVPNMTNLDELNNVMIESNFLDDAGRVKVINELSRSCPNFNVG 729 Query: 336 IKKLYTLVEMA 304 IKK T +E A Sbjct: 730 IKKTLTNIETA 740
>SEC18_CANAL (P34732) Vesicular-fusion protein SEC18| Length = 794 Score = 63.2 bits (152), Expect = 7e-10 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 1/105 (0%) Frame = -1 Query: 678 VFEDAYKSQFSXXXXXXXXXXXEFVAIGPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTS 499 VF D +KS + + IGPRFSN I Q LMV L + PPKG+ LL+IGTTS Sbjct: 645 VFRDVHKSPLNVLVIDKIENIINYNPIGPRFSNDILQVLMVYLTKKPPKGRRLLIIGTTS 704 Query: 498 ETTFLDSIGMSGVFSVTYEVPKLTK-EDAAKVLRHLNVFDEGDIE 367 + + + F+ VP + E+ KVL L ++ + E Sbjct: 705 QYQVFKHMNLIDSFNDAIAVPPIKHIEEVGKVLDKLGFMNKSERE 749
>Y1357_YERPS (Q66CP5) Putative transport protein YPTB1357| Length = 562 Score = 33.9 bits (76), Expect = 0.47 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%) Frame = -1 Query: 453 VTYEVPKLTKEDAAKVLRHLNVFDEGD-IETAAEALDDMPIKKLYTLVEMAAQGPQGGSA 277 VT E+ K L HL + D G + + +MPI L + G A Sbjct: 303 VTEEIVVKNSNAVGKRLSHLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVL-QVSGDA 361 Query: 276 EAIYAGEEKIDLNHFFSILSDIIRY*SHIHPRTLGSTIGICLFQFPQLAIFTGRESGLIP 97 + + EKI S ++D++ + S LG IG+ FQF + G +GL+ Sbjct: 362 RRVKSVAEKIGFISIHSQVTDLLAFCSFF---ILGLMIGLITFQFSNFSFGIGNAAGLLL 418 Query: 96 SGL 88 +G+ Sbjct: 419 AGI 421
>Y1326_YERPE (Q8ZGH1) Putative transport protein YPO1326/y2857/YP1266| Length = 562 Score = 33.9 bits (76), Expect = 0.47 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 1/123 (0%) Frame = -1 Query: 453 VTYEVPKLTKEDAAKVLRHLNVFDEGD-IETAAEALDDMPIKKLYTLVEMAAQGPQGGSA 277 VT E+ K L HL + D G + + +MPI L + G A Sbjct: 303 VTEEIVVKNSNAVGKRLSHLKLTDHGCFLNRVIRSQIEMPIDDNVVLNKGDVL-QVSGDA 361 Query: 276 EAIYAGEEKIDLNHFFSILSDIIRY*SHIHPRTLGSTIGICLFQFPQLAIFTGRESGLIP 97 + + EKI S ++D++ + S LG IG+ FQF + G +GL+ Sbjct: 362 RRVKSVAEKIGFISIHSQVTDLLAFCSFF---ILGLMIGLITFQFSNFSFGIGNAAGLLL 418 Query: 96 SGL 88 +G+ Sbjct: 419 AGI 421
>Y989_MYCBO (P59978) Hypothetical protein Mb0989c| Length = 160 Score = 33.1 bits (74), Expect = 0.80 Identities = 21/65 (32%), Positives = 27/65 (41%) Frame = +3 Query: 336 SAYRPAXXXXXXXXXHRRHSNVATPLQHPPLSVWEPRRSPRTHQTYQWSLEMLSRLLFQ* 515 S+Y PA RR SNV P PP+ +W PRR T + S M + + Sbjct: 81 SSYSPADQQAILNTAIRRASNVCWPTPRPPMRIW-PRRFDAPPGTCRASRSMPNSAMRHP 139 Query: 516 QASSC 530 Q C Sbjct: 140 QCRRC 144
>Y964_MYCTU (P71546) Hypothetical protein Rv0964c/MT0992.1| Length = 160 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +3 Query: 336 SAYRPAXXXXXXXXXHRRHSNVATPLQHPPLSVWEPRR 449 S+Y PA RR SNV P PP+ +W PRR Sbjct: 81 SSYSPADQQAILNTAIRRASNVCWPTPRPPMRIW-PRR 117
>IF2_ENTFC (P18311) Translation initiation factor IF-2| Length = 784 Score = 32.0 bits (71), Expect = 1.8 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 5/94 (5%) Frame = -1 Query: 507 TTSETTFLDSIGMSGVFSVTYEVPKLTK---EDAAK--VLRHLNVFDEGDIETAAEALDD 343 T E T L+ + +G V +E K + E+ AK +L H + ++ E+L + Sbjct: 520 TPVEITGLNDVPQAGDRFVVFEDEKTARAAGEERAKRALLEHRAITSRVTLDNLFESLKE 579 Query: 342 MPIKKLYTLVEMAAQGPQGGSAEAIYAGEEKIDL 241 +K++ +++ QG SAEA+ A +KID+ Sbjct: 580 GELKEVNVIIKADVQG----SAEALAASLQKIDV 609
>BCHD_HELMO (Q9ZGE6) Magnesium-chelatase 67 kDa subunit (EC 6.6.1.1)| (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) Length = 666 Score = 32.0 bits (71), Expect = 1.8 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = -1 Query: 597 GPRFSNLISQTLMVLLKRVPPKGKNLLVIGTTSE---TTFLDSIGMSGVFSVTYEVPKLT 427 GP+ +++ ++ L + VP G ++LVI T ++ T F I F+ Y +PK+T Sbjct: 591 GPKNREQLNEEILALSRLVPENGFSMLVIDTANKFTSTGFAKKIA-DAAFAQYYYLPKMT 649 Query: 426 KEDAAKVLR 400 A+ ++ Sbjct: 650 AASLAETVK 658
>XDH_CALVI (P08793) Xanthine dehydrogenase (EC 1.17.1.4) (XD)| Length = 1353 Score = 31.2 bits (69), Expect = 3.0 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Frame = -1 Query: 501 SETTFLDSIGMSGVFS---VTYEVPKLTKEDAAKVLRHLNVFDEGDIETAAEALDDMPIK 331 S T F G G+F+ + +V ++ +D ++++ N + EGDI + LD+ PI+ Sbjct: 930 SNTAFRGFGGPQGMFAGEHIIRDVARILGKDYLEIMKQ-NFYKEGDITHYQQKLDNFPIE 988 Query: 330 KLY 322 K + Sbjct: 989 KCF 991
>RUVB_SALRD (Q2S3F9) Holliday junction ATP-dependent DNA helicase ruvB (EC| 3.6.1.-) Length = 344 Score = 30.8 bits (68), Expect = 4.0 Identities = 24/69 (34%), Positives = 33/69 (47%) Frame = -1 Query: 435 KLTKEDAAKVLRHLNVFDEGDIETAAEALDDMPIKKLYTLVEMAAQGPQGGSAEAIYAGE 256 ++TK A + L L+V DE E LDDM + L TL++ GP G A+ GE Sbjct: 242 EITKAIADRALNALDV-DE-------EGLDDMDARILLTLIDNFDGGPTGLKNLAVSVGE 293 Query: 255 EKIDLNHFF 229 E L + Sbjct: 294 ESGTLEEVY 302
>COX5B_MOUSE (P19536) Cytochrome c oxidase polypeptide Vb, mitochondrial| precursor (EC 1.9.3.1) Length = 128 Score = 30.4 bits (67), Expect = 5.2 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 344 ICRSRNCTRLWRWLRRGHKGEARK 273 IC NCT +W WL HKGE+++ Sbjct: 91 ICEEDNCTVIWFWL---HKGESQR 111
>NADB_CLOAB (Q97K95) L-aspartate oxidase (EC 1.4.3.16) (LASPO) (Quinolinate| synthetase B) Length = 434 Score = 30.0 bits (66), Expect = 6.7 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 19/112 (16%) Frame = -1 Query: 528 KNLLVIGTTSETTFLDSIGMSGVFSVTYEVPKLTKEDAAKVLRH-LNVFDEGDIETAAEA 352 KN + S+ T L S G+ G+F + LT + A LRH ++V D I+ A Sbjct: 170 KNNTIYTFHSKATILASGGIGGLFKNSTNQRTLTADGIAMALRHNIDVRDLNYIQFHPTA 229 Query: 351 LDDMPIKKLYTLVEMAAQG------------------PQGGSAEAIYAGEEK 250 L D ++ L+ + +G P+ A AIY EEK Sbjct: 230 LYDSNTQEKKFLISESVRGEGGKLLSIENERFVDELLPRDVVANAIYKEEEK 281
>CSN7A_SCHPO (Q9UUJ7) COP9 signalosome complex subunit 7A| Length = 205 Score = 30.0 bits (66), Expect = 6.7 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = -1 Query: 444 EVPKLTKEDAAKVLRHLNVFDEGDIETAAEALDDMPIKK--LYTLVEMA 304 EV K D+A VLR L +F GDI A+ +++ KK L TL+++A Sbjct: 26 EVQKSQPIDSA-VLRTLEIFCRGDIRDASSEWNELRFKKLRLLTLIDLA 73
>SYW_CLOLO (Q46127) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)| (Tryptophan--tRNA ligase) (TrpRS) Length = 341 Score = 29.6 bits (65), Expect = 8.8 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 2/104 (1%) Frame = -1 Query: 588 FSNLISQTLMVLLKRVPPKGKNLLVIGTTSETTFLDSIGMSGVFSVTYEVPKLTKEDAAK 409 F+ + + ++V K V PKG + GT + SIG + + +V K Sbjct: 169 FNTIYGKEVLVEPKAVIPKGTIGRLPGTDGKAKMSKSIGNAIYLADEADVIKQKVMSMYT 228 Query: 408 VLRHLNVFDEGDIE--TAAEALDDMPIKKLYTLVEMAAQGPQGG 283 H+ V D G +E T LD K TL EM A +GG Sbjct: 229 DPNHIKVTDPGQVEGNTVFTYLDTF-CKDTETLEEMKAHYSRGG 271 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,107,422 Number of Sequences: 219361 Number of extensions: 2034763 Number of successful extensions: 5398 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5238 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5398 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6655306086 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
