ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14k12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK102296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 404 e-109
2dbj|AK072976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 404 e-109
3dbj|AK058216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 389 e-105
4gb|AY110328.1| Zea mays CL9152_1 mRNA sequence 167 6e-38
5gb|AY110408.1| Zea mays CL9152_2 mRNA sequence 129 1e-26
6gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome... 119 1e-23
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
8ref|XM_675438.1| Aspergillus nidulans FGSC A4 hypothetical prote... 46 0.15
9gb|BC019167.1| Mus musculus N-ethylmaleimide sensitive fusion pr... 44 0.59
10emb|CR788268.5| Human DNA sequence from clone RP11-24B13 on chro... 44 0.59
11emb|BX005195.5| Human DNA sequence from clone RP11-203I2 on chro... 44 0.59
12emb|AL592525.10| Human DNA sequence from clone RP11-111G23 on ch... 44 0.59
13emb|AL353729.17| Human DNA sequence from clone RP11-290L7 on chr... 44 0.59
14ref|NM_008740.2| Mus musculus N-ethylmaleimide sensitive fusion ... 44 0.59
15dbj|AK153905.1| Mus musculus 2 days neonate thymus thymic cells ... 44 0.59
16dbj|AK085086.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 44 0.59
17dbj|AK032120.1| Mus musculus adult male medulla oblongata cDNA, ... 44 0.59
18dbj|AK049281.1| Mus musculus ES cells cDNA, RIKEN full-length en... 44 0.59
19dbj|AK028415.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 44 0.59
20dbj|AK188021.1| Mus musculus cDNA, clone:Y0G0143N03, strand:minu... 44 0.59
21dbj|AK181330.1| Mus musculus cDNA, clone:Y0G0117L14, strand:minu... 44 0.59
22gb|BC006627.1| Mus musculus N-ethylmaleimide sensitive fusion pr... 44 0.59
23emb|AL596108.13| Mouse DNA sequence from clone RP23-326K2 on chr... 44 0.59
24gb|U10120.1|MMU10120 Mus musculus SKD2 mRNA, complete cds 44 0.59
25ref|NM_021748.1| Rattus norvegicus N-ethylmaleimide sensitive fu... 42 2.3
26gb|AC004112.2| Homo sapiens BAC clone CTA-313E3 from 7, complete... 42 2.3
27gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, comp... 42 2.3
28gb|AC006974.2| Homo sapiens PAC clone RP5-958B11 from 7, complet... 42 2.3
29gb|AC011586.9| Homo sapiens, clone RP11-13N12, complete sequence 42 2.3
30gb|AF189019.1|AF189019 Rattus norvegicus N-ethylmaleimide sensit... 42 2.3
31emb|Z71185.1|CEC35A5 Caenorhabditis elegans Cosmid C35A5, comple... 42 2.3
32gb|AF142097.1|AF142097 Rattus norvegicus N-ethylmaleimide sensit... 42 2.3
33gb|AC147652.4| Pan troglodytes BAC clone RP43-136A3 from chromos... 42 2.3
34dbj|AP001017.5| Homo sapiens genomic DNA, chromosome 18p clone:R... 42 2.3
35gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosom... 40 9.3
36gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete... 40 9.3
37gb|AC142335.1| Pan troglodytes BAC clone RP43-38M15 from 7, comp... 40 9.3
38emb|AL359853.18| Human DNA sequence from clone RP11-12M5 on chro... 40 9.3
39emb|AL391065.6| Human DNA sequence from clone RP11-108M21 on chr... 40 9.3
40emb|BX064696.1|CNS09M30 Single read from an extremity of a full-... 40 9.3
41emb|BX048517.1|CNS099LL Single read from an extremity of a full-... 40 9.3
42emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, ... 40 9.3
43gb|AC106707.9| Homo sapiens 3 BAC RP11-538P18 (Roswell Park Canc... 40 9.3
44gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence 40 9.3
45gb|AC091988.3| Homo sapiens chromosome 5 clone RP11-73G8, comple... 40 9.3
46gb|AC019254.12| Homo sapiens chromosome 15, clone RP11-424I19, c... 40 9.3
47ref|XM_552411.1| Anopheles gambiae str. PEST ENSANGP00000025597 ... 40 9.3
48ref|XM_320691.2| Anopheles gambiae str. PEST ENSANGP00000020044 ... 40 9.3
49gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1 40 9.3 
>dbj|AK102296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089L09, full
           insert sequence
          Length = 1237

 Score =  404 bits (204), Expect = e-109
 Identities = 408/476 (85%)
 Strand = Plus / Minus

                                                                       
Query: 203 tagcggatgatgtcactcaagatgctaaagaaatggttgaggtctatcttttcctctccg 262
           |||||||| || |||||||||||||||||||| |||||||  ||||||||||||||||| 
Sbjct: 980 tagcggataatatcactcaagatgctaaagaagtggttgatatctatcttttcctctcca 921

                                                                       
Query: 263 gcataaatggcttccgcgcttcccccttgtggcccctgcgcagccatctccacaagcgtg 322
            |||| |  |||||||||||||| |||  |||||| || ||||||||||| || || |||
Sbjct: 920 ccatagactgcttccgcgcttcctcctgatggcccttgtgcagccatctcaacgagtgtg 861

                                                                       
Query: 323 tacagtttcttgatcggcatatcgtccagcgcttctgctgctgtttcaatatctccttca 382
           ||||| |||||||| |||||||||||||| |||||||| || |  ||||| ||  |||||
Sbjct: 860 tacagcttcttgattggcatatcgtccagtgcttctgcagccgcatcaatgtccgcttca 801

                                                                       
Query: 383 tcgaagacattcaaatgtcgcaacacctttgcagcatcctcctttgtcagtttgggaacc 442
           ||||| ||||| | ||| ||||||||||||| ||||||||||||| |||||||||| || 
Sbjct: 800 tcgaacacattgagatgccgcaacacctttgtagcatcctcctttttcagtttggggaca 741

                                                                       
Query: 443 tcgtaggtcaccgagaacacaccagacataccaatggagtctagaaatgttgtctcgctt 502
           | ||| ||||| ||||||||  |  ||||||||||||| ||||||||   |   || |||
Sbjct: 740 tggtatgtcacggagaacacgtcgcacataccaatggattctagaaagcctacttcactt 681

                                                                       
Query: 503 gttgttccaataacaagcaagttcttgcccttaggaggaaccctcttgaggaggaccata 562
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  
Sbjct: 680 gttgttccaataacaagcaagttcttgcccttaggaggaaccctcttgagaaggactagt 621

                                                                       
Query: 563 agagtttgcgagatcagatttgaaaaacgtggtccgatggcaacaaactccagtaacctt 622
           |||||||| ||||| |  |||||||| |||||||| ||||||||| | ||||||||||||
Sbjct: 620 agagtttgtgagattatgtttgaaaagcgtggtccaatggcaacatattccagtaacctt 561

                                                                   
Query: 623 tcaatgtcatcaagaattatgatgctgaactgagatttgtaagcatcctcaaaaac 678
           || |||||||| |||||||||||||  |||||||||||||| ||||||||||||||
Sbjct: 560 tcgatgtcatctagaattatgatgccaaactgagatttgtatgcatcctcaaaaac 505
to top
>dbj|AK072976.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146P19, full
            insert sequence
          Length = 2709

 Score =  404 bits (204), Expect = e-109
 Identities = 408/476 (85%)
 Strand = Plus / Minus

                                                                        
Query: 203  tagcggatgatgtcactcaagatgctaaagaaatggttgaggtctatcttttcctctccg 262
            |||||||| || |||||||||||||||||||| |||||||  ||||||||||||||||| 
Sbjct: 2342 tagcggataatatcactcaagatgctaaagaagtggttgatatctatcttttcctctcca 2283

                                                                        
Query: 263  gcataaatggcttccgcgcttcccccttgtggcccctgcgcagccatctccacaagcgtg 322
             |||| |  |||||||||||||| |||  |||||| || ||||||||||| || || |||
Sbjct: 2282 ccatagactgcttccgcgcttcctcctgatggcccttgtgcagccatctcaacgagtgtg 2223

                                                                        
Query: 323  tacagtttcttgatcggcatatcgtccagcgcttctgctgctgtttcaatatctccttca 382
            ||||| |||||||| |||||||||||||| |||||||| || |  ||||| ||  |||||
Sbjct: 2222 tacagcttcttgattggcatatcgtccagtgcttctgcagccgcatcaatgtccgcttca 2163

                                                                        
Query: 383  tcgaagacattcaaatgtcgcaacacctttgcagcatcctcctttgtcagtttgggaacc 442
            ||||| ||||| | ||| ||||||||||||| ||||||||||||| |||||||||| || 
Sbjct: 2162 tcgaacacattgagatgccgcaacacctttgtagcatcctcctttttcagtttggggaca 2103

                                                                        
Query: 443  tcgtaggtcaccgagaacacaccagacataccaatggagtctagaaatgttgtctcgctt 502
            | ||| ||||| ||||||||  |  ||||||||||||| ||||||||   |   || |||
Sbjct: 2102 tggtatgtcacggagaacacgtcgcacataccaatggattctagaaagcctacttcactt 2043

                                                                        
Query: 503  gttgttccaataacaagcaagttcttgcccttaggaggaaccctcttgaggaggaccata 562
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  
Sbjct: 2042 gttgttccaataacaagcaagttcttgcccttaggaggaaccctcttgagaaggactagt 1983

                                                                        
Query: 563  agagtttgcgagatcagatttgaaaaacgtggtccgatggcaacaaactccagtaacctt 622
            |||||||| ||||| |  |||||||| |||||||| ||||||||| | ||||||||||||
Sbjct: 1982 agagtttgtgagattatgtttgaaaagcgtggtccaatggcaacatattccagtaacctt 1923

                                                                    
Query: 623  tcaatgtcatcaagaattatgatgctgaactgagatttgtaagcatcctcaaaaac 678
            || |||||||| |||||||||||||  |||||||||||||| ||||||||||||||
Sbjct: 1922 tcgatgtcatctagaattatgatgccaaactgagatttgtatgcatcctcaaaaac 1867
to top
>dbj|AK058216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-E10, full
            insert sequence
          Length = 1461

 Score =  389 bits (196), Expect = e-105
 Identities = 406/476 (85%)
 Strand = Plus / Minus

                                                                        
Query: 203  tagcggatgatgtcactcaagatgctaaagaaatggttgaggtctatcttttcctctccg 262
            |||||||| || |||||||||||||||||||| |||||||  |||||||| |||||||| 
Sbjct: 1270 tagcggataatatcactcaagatgctaaagaagtggttgatatctatcttctcctctcca 1211

                                                                        
Query: 263  gcataaatggcttccgcgcttcccccttgtggcccctgcgcagccatctccacaagcgtg 322
             |||| |  |||||||||||||| |||  |||||| || ||||||||||| || || |||
Sbjct: 1210 ccatagactgcttccgcgcttcctcctgatggcccttgtgcagccatctcaacgagtgtg 1151

                                                                        
Query: 323  tacagtttcttgatcggcatatcgtccagcgcttctgctgctgtttcaatatctccttca 382
            ||||| |||||||| |||||||||||||| |||||||| || |  ||||| ||  |||||
Sbjct: 1150 tacagcttcttgattggcatatcgtccagtgcttctgcagccgcatcaatgtccgcttca 1091

                                                                        
Query: 383  tcgaagacattcaaatgtcgcaacacctttgcagcatcctcctttgtcagtttgggaacc 442
            ||||| ||||| | ||| |||| |||||||| ||||||||||||| |||||||||| || 
Sbjct: 1090 tcgaacacattgagatgccgcagcacctttgtagcatcctcctttttcagtttggggaca 1031

                                                                        
Query: 443  tcgtaggtcaccgagaacacaccagacataccaatggagtctagaaatgttgtctcgctt 502
            | ||| ||||| ||||||||  |  ||||||||||||| ||||||||   |   || |||
Sbjct: 1030 tggtatgtcacggagaacacgtcgcacataccaatggattctagaaagcctacttcactt 971

                                                                        
Query: 503  gttgttccaataacaagcaagttcttgcccttaggaggaaccctcttgaggaggaccata 562
            |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |  
Sbjct: 970  gttgttccaataacaagcaagttcttgcccttaggaggaaccctcttgagaaggactagt 911

                                                                        
Query: 563  agagtttgcgagatcagatttgaaaaacgtggtccgatggcaacaaactccagtaacctt 622
            |||||||| ||||| |  |||||||| |||||||| ||||||||| | ||||||||||||
Sbjct: 910  agagtttgtgagattatgtttgaaaagcgtggtccaatggcaacatattccagtaacctt 851

                                                                    
Query: 623  tcaatgtcatcaagaattatgatgctgaactgagatttgtaagcatcctcaaaaac 678
            || |||||||| |||||||||||||  |||||||||||||| ||||||||||||||
Sbjct: 850  tcgatgtcatctagaattatgatgccaaactgagatttgtatgcatcctcaaaaac 795
to top
>gb|AY110328.1| Zea mays CL9152_1 mRNA sequence
          Length = 1179

 Score =  167 bits (84), Expect = 6e-38
 Identities = 149/174 (85%)
 Strand = Plus / Plus

                                                                       
Query: 496 ctcgcttgttgttccaataacaagcaagttcttgcccttaggaggaaccctcttgaggag 555
           |||||||||||||||||| ||||||| |      ||||||||||||||||||||||||||
Sbjct: 563 ctcgcttgttgttccaatcacaagcaggnnnnnccccttaggaggaaccctcttgaggag 622

                                                                       
Query: 556 gaccataagagtttgcgagatcagatttgaaaaacgtggtccgatggcaacaaactccag 615
           ||||| ||||||||| |||||||  ||||     |||||||| ||||| ||| |||||||
Sbjct: 623 gaccagaagagtttgagagatcaagtttgnnnnncgtggtccaatggctacatactccag 682

                                                                 
Query: 616 taacctttcaatgtcatcaagaattatgatgctgaactgagatttgtaagcatc 669
           ||||||||| || |||||||||| |||||||||||||||||| ||||| |||||
Sbjct: 683 taacctttcgatatcatcaagaactatgatgctgaactgagacttgtatgcatc 736



 Score =  137 bits (69), Expect = 5e-29
 Identities = 132/153 (86%)
 Strand = Plus / Plus

                                                                       
Query: 199 tcagtagcggatgatgtcactcaagatgctaaagaaatggttgaggtctatcttttcctc 258
           |||||| ||||| || ||||| |||||||| |||||||||||||  |||||||| || ||
Sbjct: 266 tcagtaacggataatatcacttaagatgctgaagaaatggttgatatctatcttgtcttc 325

                                                                       
Query: 259 tccggcataaatggcttccgcgcttcccccttgtggcccctgcgcagccatctccacaag 318
           |||||||||||| ||||| || ||||| ||   ||||||||| ||||||||||| |||||
Sbjct: 326 tccggcataaattgcttctgcacttcctccggttggcccctgtgcagccatctcaacaag 385

                                            
Query: 319 cgtgtacagtttcttgatcggcatatcgtccag 351
           ||||||||| |||||||| |||||||| |||||
Sbjct: 386 cgtgtacagcttcttgattggcatatcatccag 418
to top
>gb|AY110408.1| Zea mays CL9152_2 mRNA sequence
          Length = 846

 Score =  129 bits (65), Expect = 1e-26
 Identities = 130/151 (86%), Gaps = 3/151 (1%)
 Strand = Plus / Plus

                                                                       
Query: 201 agtagcggatgatgtcactcaagatgctaaagaaatggttgaggtctatcttttcctctc 260
           |||| ||||| || ||||||||||||||||||||||||||||  ||||||||   |||||
Sbjct: 474 agtaacggataatatcactcaagatgctaaagaaatggttgatatctatctt---ctctc 530

                                                                       
Query: 261 cggcataaatggcttccgcgcttcccccttgtggcccctgcgcagccatctccacaagcg 320
           |||||||||| ||||| || ||||| ||   ||||||||| ||||||||||| ||||| |
Sbjct: 531 cggcataaatcgcttcagcacttcctccggttggcccctgagcagccatctcaacaagtg 590

                                          
Query: 321 tgtacagtttcttgatcggcatatcgtccag 351
           ||||||  |||||||| ||||||||||||||
Sbjct: 591 tgtacaacttcttgattggcatatcgtccag 621



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 64/75 (85%)
 Strand = Plus / Plus

                                                                       
Query: 496 ctcgcttgttgttccaataacaagcaagttcttgcccttaggaggaaccctcttgaggag 555
           |||||||||||||||||  |||||||||      |||||||||||||| ||||||| |||
Sbjct: 766 ctcgcttgttgttccaacgacaagcaagnnnnnncccttaggaggaactctcttgangag 825

                          
Query: 556 gaccataagagtttg 570
           ||||| |||||||||
Sbjct: 826 gaccagaagagtttg 840
to top
>gb|AC132491.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0599F04,
             complete sequence
          Length = 169073

 Score =  119 bits (60), Expect = 1e-23
 Identities = 120/140 (85%)
 Strand = Plus / Plus

                                                                         
Query: 203   tagcggatgatgtcactcaagatgctaaagaaatggttgaggtctatcttttcctctccg 262
             |||||||| || |||||||||||||||||||| |||||||  ||||||||||||||||| 
Sbjct: 98211 tagcggataatatcactcaagatgctaaagaagtggttgatatctatcttttcctctcca 98270

                                                                         
Query: 263   gcataaatggcttccgcgcttcccccttgtggcccctgcgcagccatctccacaagcgtg 322
              |||| |  |||||||||||||| |||  |||||| || ||||||||||| || || |||
Sbjct: 98271 ccatagactgcttccgcgcttcctcctgatggcccttgtgcagccatctcaacgagtgtg 98330

                                 
Query: 323   tacagtttcttgatcggcat 342
             ||||| |||||||| |||||
Sbjct: 98331 tacagcttcttgattggcat 98350



 Score =  103 bits (52), Expect = 7e-19
 Identities = 109/128 (85%)
 Strand = Plus / Plus

                                                                         
Query: 406   cacctttgcagcatcctcctttgtcagtttgggaacctcgtaggtcaccgagaacacacc 465
             |||||||| ||||||||||||| |||||||||| || | ||| ||||| ||||||||  |
Sbjct: 98672 cacctttgtagcatcctcctttttcagtttggggacatggtatgtcacggagaacacgtc 98731

                                                                         
Query: 466   agacataccaatggagtctagaaatgttgtctcgcttgttgttccaataacaagcaagtt 525
               ||||||||||||| ||||||||   |   || ||||||||||||||||||||||||||
Sbjct: 98732 gcacataccaatggattctagaaagcctacttcacttgttgttccaataacaagcaagtt 98791

                     
Query: 526   cttgccct 533
             ||||||||
Sbjct: 98792 cttgccct 98799



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                         
Query: 531   ccttaggaggaaccctcttgaggaggaccataagagtttgcgagatcagatttgaaaaac 590
             |||||||||||||||||||||| ||||| |  |||||||| ||||| |  |||||||| |
Sbjct: 99041 ccttaggaggaaccctcttgagaaggactagtagagtttgtgagattatgtttgaaaagc 99100

                                            
Query: 591   gtggtccgatggcaacaaactccagtaacct 621
             ||||||| ||||||||| | |||||||||||
Sbjct: 99101 gtggtccaatggcaacatattccagtaacct 99131



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                         
Query: 618   acctttcaatgtcatcaagaattatgatgctgaactgagatttgtaagcatcctcaaaaa 677
             ||||||| |||||||| |||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 99228 acctttcgatgtcatctagaattatgatgccaaactgagatttgtatgcatcctcaaaaa 99287

              
Query: 678   c 678
             |
Sbjct: 99288 c 99288
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  119 bits (60), Expect = 1e-23
 Identities = 120/140 (85%)
 Strand = Plus / Plus

                                                                            
Query: 203      tagcggatgatgtcactcaagatgctaaagaaatggttgaggtctatcttttcctctccg 262
                |||||||| || |||||||||||||||||||| |||||||  ||||||||||||||||| 
Sbjct: 25581804 tagcggataatatcactcaagatgctaaagaagtggttgatatctatcttttcctctcca 25581863

                                                                            
Query: 263      gcataaatggcttccgcgcttcccccttgtggcccctgcgcagccatctccacaagcgtg 322
                 |||| |  |||||||||||||| |||  |||||| || ||||||||||| || || |||
Sbjct: 25581864 ccatagactgcttccgcgcttcctcctgatggcccttgtgcagccatctcaacgagtgtg 25581923

                                    
Query: 323      tacagtttcttgatcggcat 342
                ||||| |||||||| |||||
Sbjct: 25581924 tacagcttcttgattggcat 25581943



 Score =  103 bits (52), Expect = 7e-19
 Identities = 109/128 (85%)
 Strand = Plus / Plus

                                                                            
Query: 406      cacctttgcagcatcctcctttgtcagtttgggaacctcgtaggtcaccgagaacacacc 465
                |||||||| ||||||||||||| |||||||||| || | ||| ||||| ||||||||  |
Sbjct: 25582265 cacctttgtagcatcctcctttttcagtttggggacatggtatgtcacggagaacacgtc 25582324

                                                                            
Query: 466      agacataccaatggagtctagaaatgttgtctcgcttgttgttccaataacaagcaagtt 525
                  ||||||||||||| ||||||||   |   || ||||||||||||||||||||||||||
Sbjct: 25582325 gcacataccaatggattctagaaagcctacttcacttgttgttccaataacaagcaagtt 25582384

                        
Query: 526      cttgccct 533
                ||||||||
Sbjct: 25582385 cttgccct 25582392



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 79/91 (86%)
 Strand = Plus / Plus

                                                                            
Query: 531      ccttaggaggaaccctcttgaggaggaccataagagtttgcgagatcagatttgaaaaac 590
                |||||||||||||||||||||| ||||| |  |||||||| ||||| |  |||||||| |
Sbjct: 25582634 ccttaggaggaaccctcttgagaaggactagtagagtttgtgagattatgtttgaaaagc 25582693

                                               
Query: 591      gtggtccgatggcaacaaactccagtaacct 621
                ||||||| ||||||||| | |||||||||||
Sbjct: 25582694 gtggtccaatggcaacatattccagtaacct 25582724



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                            
Query: 618      acctttcaatgtcatcaagaattatgatgctgaactgagatttgtaagcatcctcaaaaa 677
                ||||||| |||||||| |||||||||||||  |||||||||||||| |||||||||||||
Sbjct: 25582821 acctttcgatgtcatctagaattatgatgccaaactgagatttgtatgcatcctcaaaaa 25582880

                 
Query: 678      c 678
                |
Sbjct: 25582881 c 25582881
to top
>ref|XM_675438.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7261.2), mRNA
          Length = 3018

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 5   caagccctcaggcttagacaaca 27
           |||||||||||||||||||||||
Sbjct: 153 caagccctcaggcttagacaaca 175
to top
>gb|BC019167.1| Mus musculus N-ethylmaleimide sensitive fusion protein, mRNA (cDNA
            clone MGC:29117 IMAGE:4506351), complete cds
          Length = 3731

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 646  gctgaactgagatttgtaagcatcctcaaa 675
            ||||| |||||||||||||||||| |||||
Sbjct: 1822 gctgagctgagatttgtaagcatcatcaaa 1793
to top
>emb|CR788268.5| Human DNA sequence from clone RP11-24B13 on chromosome 9 Contains the 3'
              end of the gene for a novel protein similar to contactin
              associated protein-like 3 (CNTNAP3) and an RNA binding
              motif protein 17 (RBM17) pseudogene, complete sequence
          Length = 164026

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 604    aacaaactccagtaacctttca 625
              ||||||||||||||||||||||
Sbjct: 116141 aacaaactccagtaacctttca 116162
to top
>emb|BX005195.5| Human DNA sequence from clone RP11-203I2 on chromosome 9 Contains the
             3' end of a pseudogene similar to part of contactin
             associated protein-like family and a pseudogene similar to
             part of a vomeronasal receptor, complete sequence
          Length = 174843

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 604   aacaaactccagtaacctttca 625
             ||||||||||||||||||||||
Sbjct: 56183 aacaaactccagtaacctttca 56204
to top
>emb|AL592525.10| Human DNA sequence from clone RP11-111G23 on chromosome 9 Contains a
             pseudogene similar to part of contactin associated
             protein-like 3 (CNTNAP3) and a pseudogene similar to part
             of vomeronasal 2 family, complete sequence
          Length = 142805

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 604   aacaaactccagtaacctttca 625
             ||||||||||||||||||||||
Sbjct: 32709 aacaaactccagtaacctttca 32730
to top
>emb|AL353729.17| Human DNA sequence from clone RP11-290L7 on chromosome 9 Contains the
             3' end of the CNTNAP3 gene for contactin associated
             protein-like 3, a TGF beta-inducible nuclear protein 1
             (TINP1) pseudogene and a RNA binding motif protein 17
             (RBM17) pseudogene, complete sequence
          Length = 195668

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 604   aacaaactccagtaacctttca 625
             ||||||||||||||||||||||
Sbjct: 92097 aacaaactccagtaacctttca 92118
to top
>ref|NM_008740.2| Mus musculus N-ethylmaleimide sensitive fusion protein (Nsf), mRNA
          Length = 3787

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 646  gctgaactgagatttgtaagcatcctcaaa 675
            ||||| |||||||||||||||||| |||||
Sbjct: 1874 gctgagctgagatttgtaagcatcatcaaa 1845
to top
>dbj|AK153905.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430004I08
            product:N-ethylmaleimide sensitive fusion protein, full
            insert sequence
          Length = 2910

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 646  gctgaactgagatttgtaagcatcctcaaa 675
            ||||| |||||||||||||||||| |||||
Sbjct: 1838 gctgagctgagatttgtaagcatcatcaaa 1809
to top
>dbj|AK085086.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
            library, clone:D430035B05 product:N-ethylmaleimide
            sensitive fusion protein, full insert sequence
          Length = 3721

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 646  gctgaactgagatttgtaagcatcctcaaa 675
            ||||| |||||||||||||||||| |||||
Sbjct: 1823 gctgagctgagatttgtaagcatcatcaaa 1794
to top
>dbj|AK032120.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
           enriched library, clone:6330598K13
           product:N-ethylmaleimide sensitive fusion protein, full
           insert sequence
          Length = 2214

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 646 gctgaactgagatttgtaagcatcctcaaa 675
           ||||| |||||||||||||||||| |||||
Sbjct: 301 gctgagctgagatttgtaagcatcatcaaa 272
to top
>dbj|AK049281.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
            clone:C330019C14 product:N-ethylmaleimide sensitive
            fusion protein, full insert sequence
          Length = 3660

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 646  gctgaactgagatttgtaagcatcctcaaa 675
            ||||| |||||||||||||||||| |||||
Sbjct: 1839 gctgagctgagatttgtaagcatcatcaaa 1810
to top
>dbj|AK028415.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:4022401I10 product:N-ethylmaleimide
           sensitive fusion protein, full insert sequence
          Length = 2486

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 646 gctgaactgagatttgtaagcatcctcaaa 675
           ||||| |||||||||||||||||| |||||
Sbjct: 593 gctgagctgagatttgtaagcatcatcaaa 564
to top
>dbj|AK188021.1| Mus musculus cDNA, clone:Y0G0143N03, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000040443, based on BLAT search
          Length = 210

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 646 gctgaactgagatttgtaagcatcctcaaa 675
           ||||| |||||||||||||||||| |||||
Sbjct: 154 gctgagctgagatttgtaagcatcatcaaa 125
to top
>dbj|AK181330.1| Mus musculus cDNA, clone:Y0G0117L14, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000040443, based on BLAT search
          Length = 210

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 646 gctgaactgagatttgtaagcatcctcaaa 675
           ||||| |||||||||||||||||| |||||
Sbjct: 154 gctgagctgagatttgtaagcatcatcaaa 125
to top
>gb|BC006627.1| Mus musculus N-ethylmaleimide sensitive fusion protein, mRNA (cDNA
            clone MGC:11511 IMAGE:3968733), complete cds
          Length = 3787

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 646  gctgaactgagatttgtaagcatcctcaaa 675
            ||||| |||||||||||||||||| |||||
Sbjct: 1874 gctgagctgagatttgtaagcatcatcaaa 1845
to top
>emb|AL596108.13| Mouse DNA sequence from clone RP23-326K2 on chromosome 11, complete
              sequence
          Length = 200966

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 646    gctgaactgagatttgtaagcatcctcaaa 675
              ||||| |||||||||||||||||| |||||
Sbjct: 122069 gctgagctgagatttgtaagcatcatcaaa 122098
to top
>gb|U10120.1|MMU10120 Mus musculus SKD2 mRNA, complete cds
          Length = 2468

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 646  gctgaactgagatttgtaagcatcctcaaa 675
            ||||| |||||||||||||||||| |||||
Sbjct: 1827 gctgagctgagatttgtaagcatcatcaaa 1798
to top
>ref|NM_021748.1| Rattus norvegicus N-ethylmaleimide sensitive fusion protein (Nsf),
            mRNA
          Length = 2764

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 647  ctgaactgagatttgtaagcatcctcaaa 675
            |||| |||||||||||||||||| |||||
Sbjct: 1797 ctgagctgagatttgtaagcatcatcaaa 1769
to top
>gb|AC004112.2| Homo sapiens BAC clone CTA-313E3 from 7, complete sequence
          Length = 155536

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     acaagccctcaggcttagaca 24
             |||||||||||||||||||||
Sbjct: 35164 acaagccctcaggcttagaca 35184
to top
>gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, complete sequence
          Length = 188333

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     acaagccctcaggcttagaca 24
             |||||||||||||||||||||
Sbjct: 14227 acaagccctcaggcttagaca 14247
to top
>gb|AC006974.2| Homo sapiens PAC clone RP5-958B11 from 7, complete sequence
          Length = 90241

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 147   gaaataaacaaattcctatagtgga 171
             ||||| |||||||||||||||||||
Sbjct: 54073 gaaattaacaaattcctatagtgga 54049
to top
>gb|AC011586.9| Homo sapiens, clone RP11-13N12, complete sequence
          Length = 167475

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     agccctcaggcttagacaaca 27
             |||||||||||||||||||||
Sbjct: 24045 agccctcaggcttagacaaca 24025
to top
>gb|AF189019.1|AF189019 Rattus norvegicus N-ethylmaleimide sensitive factor (NSF) mRNA,
            complete cds
          Length = 2764

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 647  ctgaactgagatttgtaagcatcctcaaa 675
            |||| |||||||||||||||||| |||||
Sbjct: 1797 ctgagctgagatttgtaagcatcatcaaa 1769
to top
>emb|Z71185.1|CEC35A5 Caenorhabditis elegans Cosmid C35A5, complete sequence
          Length = 42031

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 620   ctttcaatgtcatcaagaatt 640
             |||||||||||||||||||||
Sbjct: 30309 ctttcaatgtcatcaagaatt 30329
to top
>gb|AF142097.1|AF142097 Rattus norvegicus N-ethylmaleimide sensitive factor (ERG1) mRNA,
            complete cds
          Length = 2282

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 647  ctgaactgagatttgtaagcatcctcaaa 675
            |||| |||||||||||||||||| |||||
Sbjct: 1797 ctgagctgagatttgtaagcatcatcaaa 1769
to top
>gb|AC147652.4| Pan troglodytes BAC clone RP43-136A3 from chromosome 7, complete
             sequence
          Length = 196621

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 4     acaagccctcaggcttagaca 24
             |||||||||||||||||||||
Sbjct: 39374 acaagccctcaggcttagaca 39394
to top
>dbj|AP001017.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-712C7, complete
             sequences
          Length = 131000

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 629   tcatcaagaattatgatgctg 649
             |||||||||||||||||||||
Sbjct: 83483 tcatcaagaattatgatgctg 83503
to top
>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete
             sequence
          Length = 217187

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 5     caagccctcaggcttagacaacag 28
             |||||||||| |||||||||||||
Sbjct: 88401 caagccctcatgcttagacaacag 88424
to top
>gb|AC004142.2| Homo sapiens BAC clone CTB-118D7 from 7, complete sequence
          Length = 166126

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    ctccttcatcgaagacattc 394
              ||||||||||||||||||||
Sbjct: 145141 ctccttcatcgaagacattc 145122
to top
>gb|AC142335.1| Pan troglodytes BAC clone RP43-38M15 from 7, complete sequence
          Length = 181138

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   ctccttcatcgaagacattc 394
             ||||||||||||||||||||
Sbjct: 37512 ctccttcatcgaagacattc 37493
to top
>emb|AL359853.18| Human DNA sequence from clone RP11-12M5 on chromosome 1 Contains five
              novel genes and a CpG island, complete sequence
          Length = 173031

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    actgaaataaacaaattcct 163
              ||||||||||||||||||||
Sbjct: 152916 actgaaataaacaaattcct 152897
to top
>emb|AL391065.6| Human DNA sequence from clone RP11-108M21 on chromosome 1 Contains part
             of a novel gene, complete sequence
          Length = 170639

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   gaaataaacaaattcctata 166
             ||||||||||||||||||||
Sbjct: 12817 gaaataaacaaattcctata 12798
to top
>emb|BX064696.1|CNS09M30 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC48AG05 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 465

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 450 tcaccgagaacacaccagacatac 473
           ||||||||||||||||| ||||||
Sbjct: 366 tcaccgagaacacaccacacatac 343
to top
>emb|BX048517.1|CNS099LL Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAC23CH08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 930

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 450 tcaccgagaacacaccagacatac 473
           ||||||||||||||||| ||||||
Sbjct: 636 tcaccgagaacacaccacacatac 613
to top
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
          Length = 198563

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 616   taacctttcaatgtcatcaagaattatgatgctgaactgagatttgtaagcatcctcaaa 675
             |||||||||||| || ||||| || |||||||| |   ||||||| || |||||||||||
Sbjct: 22673 taacctttcaatatcgtcaaggataatgatgctcattggagatttatatgcatcctcaaa 22732
to top
>gb|AC106707.9| Homo sapiens 3 BAC RP11-538P18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 189059

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 615   gtaacctttcaatgtcatca 634
             ||||||||||||||||||||
Sbjct: 66574 gtaacctttcaatgtcatca 66555
to top
>gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence
          Length = 185590

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   ctctctacctgtgaagatgg 131
             ||||||||||||||||||||
Sbjct: 77748 ctctctacctgtgaagatgg 77767
to top
>gb|AC091988.3| Homo sapiens chromosome 5 clone RP11-73G8, complete sequence
          Length = 148263

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 416    gcatcctcctttgtcagttt 435
              ||||||||||||||||||||
Sbjct: 126127 gcatcctcctttgtcagttt 126108
to top
>gb|AC019254.12| Homo sapiens chromosome 15, clone RP11-424I19, complete sequence
          Length = 179030

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 344    tcgtccagcgcttctgctgc 363
              ||||||||||||||||||||
Sbjct: 120034 tcgtccagcgcttctgctgc 120053
to top
>ref|XM_552411.1| Anopheles gambiae str. PEST ENSANGP00000025597 (ENSANGG00000017555),
             partial mRNA
          Length = 13719

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gtgaagatggcaagctgggg 141
             ||||||||||||||||||||
Sbjct: 11492 gtgaagatggcaagctgggg 11511
to top
>ref|XM_320691.2| Anopheles gambiae str. PEST ENSANGP00000020044 (ENSANGG00000017555),
             partial mRNA
          Length = 14568

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gtgaagatggcaagctgggg 141
             ||||||||||||||||||||
Sbjct: 12329 gtgaagatggcaagctgggg 12348
to top
>gb|AF128393.1|T1J1 Arabidopsis thaliana BAC T1J1
          Length = 53778

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 616   taacctttcaatgtcatcaagaattatgatgctgaactgagatttgtaagcatcctcaaa 675
             |||||||||||| || ||||| || |||||||| |   ||||||| || |||||||||||
Sbjct: 14726 taacctttcaatatcgtcaaggataatgatgctcattggagatttatatgcatcctcaaa 14785


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,626,114
Number of Sequences: 3902068
Number of extensions: 6626114
Number of successful extensions: 113137
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113015
Number of HSP's gapped (non-prelim): 120
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top