ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14k09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB052133.1| Triticum aestivum tck2a mRNA for casein kinase I... 478 e-132
2dbj|AB213317.1| Lolium perenne Lpck2a-2 mRNA for casein protein ... 143 5e-31
3ref|XM_469865.1| Oryza sativa (japonica cultivar-group), mRNA 84 4e-13
4dbj|AB036788.1| Oryza sativa (indica cultivar-group) Kasalath OS... 84 4e-13
5dbj|AB036787.1| Oryza sativa (japonica cultivar-group) Nipponbar... 84 4e-13
6gb|BT016803.1| Zea mays clone Contig636 mRNA sequence 82 2e-12
7gb|AY109433.1| Zea mays CL1074_1 mRNA sequence 82 2e-12
8emb|Y11526.1|ZMCK2 Z.mays mRNA for casein kinase II alpha subunit 78 3e-11
9dbj|AB213316.1| Lolium perenne Lpck2a-1 mRNA for casein protein ... 78 3e-11
10gb|AY106259.1| Zea mays PCO082342 mRNA sequence 78 3e-11
11ref|NM_194133.2| Oryza sativa (japonica cultivar-group), mRNA 76 1e-10
12dbj|AK070271.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 1e-10
13gb|AF239819.1| Zea mays protein kinase CK2 catalytic subunit CK2... 74 4e-10
14dbj|D29696.1|RICYK8 Oryza sativa mRNA, partial homologous to cas... 72 2e-09
15gb|BT024107.1| Zea mays clone EL01N0520F10 mRNA sequence 70 6e-09
16gb|AF042199.1|AF042199 Oryza sativa casein kinase mRNA, partial cds 68 2e-08
17gb|AF517838.1| Lilium davidii CK2 catalytic alpha subunit mRNA, ... 64 4e-07
18gb|AF271237.1|AF271237 Zea mays casein kinase II alpha subunit m... 58 2e-05
19emb|X61387.1|ZMACK2 Z.mays ZMACK2 mRNA for casein kinase II alph... 58 2e-05
20gb|DQ157464.1| Oryza sativa (indica cultivar-group) strain Supha... 54 4e-04
21gb|DQ157463.1| Oryza sativa (indica cultivar-group) strain KDML ... 54 4e-04
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 4e-04
23gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genom... 54 4e-04
24gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genom... 54 4e-04
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
26dbj|AB036786.1| Oryza sativa (indica cultivar-group) Kasalath OS... 54 4e-04
27dbj|AB036785.1| Oryza sativa (japonica cultivar-group) Nipponbar... 54 4e-04
28ref|XM_623394.1| PREDICTED: Apis mellifera similar to casein kin... 50 0.006
29ref|XM_623345.1| PREDICTED: Apis mellifera similar to casein kin... 50 0.006
30ref|XM_393260.2| PREDICTED: Apis mellifera similar to casein kin... 50 0.006
31dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.091
32dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.091
33dbj|AK120259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.091
34dbj|AK058359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.091
35gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cance... 42 1.4
36gb|AC109211.10| Mus musculus chromosome 8, clone RP23-27N18, com... 42 1.4
37gb|AY686597.1| Drosophila virilis Dscam gene, exons 3 through 16... 40 5.6
38gb|AC112945.9| Mus musculus chromosome 15, clone RP23-382O21, co... 40 5.6
39gb|AC166334.8| Mus musculus chromosome 7, clone RP23-470P9, comp... 40 5.6
40gb|AC157552.10| Mus musculus chromosome 7, clone RP23-89C10, com... 40 5.6
41gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, co... 40 5.6
42gb|AC092415.3| Homo sapiens chromosome 3 clone RP11-9A14, comple... 40 5.6 
>dbj|AB052133.1| Triticum aestivum tck2a mRNA for casein kinase II alpha, complete cds
          Length = 1531

 Score =  478 bits (241), Expect = e-132
 Identities = 356/387 (91%), Gaps = 7/387 (1%)
 Strand = Plus / Minus

                                                                        
Query: 27   aagcaacttaacaaagnatattctttacaagacagcagtcgtacaatattaccgaacacg 86
            |||||| ||| ||||| |||||||||||||| ||| ||||||||||| ||||| ||||||
Sbjct: 1473 aagcaatttaccaaag-atattctttacaag-cag-agtcgtacaatgttaccaaacacg 1417

                                                                        
Query: 87   ttacatgaaaagtgtgttgcgaactttcaatcaatcaggtttccatacacaaacaacaag 146
            ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct: 1416 ttacatgaaaagtgt-ttgcgaagtttcaatcaatcaggtttccatacacaaacaacagg 1358

                                                                        
Query: 147  agcaaatcacagttcttttccccctcgacgat-agaggcacacaccacacaggctcttac 205
            ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct: 1357 agcaaatcacagttcttttccgcctcgtcgatgagaggcacacaccacacaggctcttac 1298

                                                                        
Query: 206  ctttcccagctgatccaaccattatcgagttgtaatacgtgacaaagtcgctacaaggat 265
            ||||||||||||| ||||||||||||||||  |||||| |||||||||||||||||||||
Sbjct: 1297 ctttcccagctgacccaaccattatcgagtcataatacatgacaaagtcgctacaaggat 1238

                                                                        
Query: 266  gcggcttcatcacgcgctgctcattcaatgtncaagcaacagtcctgctattgctattgc 325
            || ||||| ||| ||||||||| ||||||||   |||||||||| |||||||||||||||
Sbjct: 1237 gcagcttcgtcaagcgctgctcgttcaatgtc--agcaacagtcttgctattgctattgc 1180

                                                                        
Query: 326  gcgcgagtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagct 385
            || ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||
Sbjct: 1179 gcacgagtcctgctgttttcggcagccctcacctggaggaagtatggatgtgccatagct 1120

                                       
Query: 386  tcacgtgcagtgagcctgtcctggtga 412
            |||||||| |||||||| |||||||||
Sbjct: 1119 tcacgtgcggtgagcctatcctggtga 1093
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>dbj|AB213317.1| Lolium perenne Lpck2a-2 mRNA for casein protein kinase 2 alpha
            subunit, complete cds
          Length = 1472

 Score =  143 bits (72), Expect = 5e-31
 Identities = 103/112 (91%), Gaps = 1/112 (0%)
 Strand = Plus / Minus

                                                                        
Query: 302  caacagtcctgctattgct-attgcgcgcgagtcctgctgttttcagcggccctcacctg 360
            |||||||| |||||||||| | || || ||||||||||||||||| ||||||||||||||
Sbjct: 1174 caacagtcttgctattgcttactgtgcacgagtcctgctgttttctgcggccctcacctg 1115

                                                                
Query: 361  caggaagtatggatgtgccatagcttcacgtgcagtgagcctgtcctggtga 412
             ||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 1114 gaggaagtatggatgtgccatagcttcacgtgcagttagcctatcctggtga 1063



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 102/119 (85%), Gaps = 2/119 (1%)
 Strand = Plus / Minus

                                                                        
Query: 44   atattctttacaagacagcagtcgtacaatattaccgaacacgttacatgaaaagtgtgt 103
            |||||||||||||| ||| | || ||||||| |||| |||| |||||||||| | |||||
Sbjct: 1430 atattctttacaag-cag-actcatacaatagtaccaaacaagttacatgaataatgtgt 1373

                                                                       
Query: 104  tgcgaactttcaatcaatcaggtttccatacacaaacaacaagagcaaatcacagttct 162
            ||| ||||| |||| ||||||||| ||| |||||||||| | ||| |||||||||||||
Sbjct: 1372 tgcaaacttgcaattaatcaggttaccacacacaaacaagaggagtaaatcacagttct 1314



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                        
Query: 212  cagctgatccaaccattatcgagttgtaatacgtgacaaagtcgctacaaggatgcggct 271
            |||||||||||||||||||||||||| ||||| |||| ||||||| | ||||| ||||||
Sbjct: 1263 cagctgatccaaccattatcgagttgaaatacatgaccaagtcgccaaaaggaagcggct 1204

                 
Query: 272  tcatc 276
            |||||
Sbjct: 1203 tcatc 1199
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>ref|XM_469865.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 642

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                       
Query: 335 ctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgtgca 394
           ||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 438 ctgctattttctgcagctctcacttggaggaagtacggatgtgccatagcttcacgtgca 379

                             
Query: 395 gtgagcctgtcctggtga 412
           |||||||| || ||||||
Sbjct: 378 gtgagcctatcttggtga 361
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>dbj|AB036788.1| Oryza sativa (indica cultivar-group) Kasalath OSCKA2 mRNA for casein
            kinase II alpha subunit, complete cds
          Length = 1474

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 335  ctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgtgca 394
            ||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 1270 ctgctattttctgcagctctcacttggaggaagtacggatgtgccatagcttcacgtgca 1211

                              
Query: 395  gtgagcctgtcctggtga 412
            |||||||| || ||||||
Sbjct: 1210 gtgagcctatcttggtga 1193
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>dbj|AB036787.1| Oryza sativa (japonica cultivar-group) Nipponbare OSCKA2 mRNA for
            casein kinase II alpha subunit, complete cds
          Length = 1474

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 69/78 (88%)
 Strand = Plus / Minus

                                                                        
Query: 335  ctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgtgca 394
            ||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||||
Sbjct: 1270 ctgctattttctgcagctctcacttggaggaagtacggatgtgccatagcttcacgtgca 1211

                              
Query: 395  gtgagcctgtcctggtga 412
            |||||||| || ||||||
Sbjct: 1210 gtgagcctatcttggtga 1193
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>gb|BT016803.1| Zea mays clone Contig636 mRNA sequence
          Length = 1570

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                        
Query: 332  gtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgt 391
            ||||||||||| || || |||||||| ||  |||||||||| |||| |||||||||||||
Sbjct: 1191 gtcctgctgttctctgcagccctcacttgttggaagtatgggtgtgtcatagcttcacgt 1132

                             
Query: 392  gcagtgagcctgtcctg 408
            ||||| |||||||||||
Sbjct: 1131 gcagtaagcctgtcctg 1115
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>gb|AY109433.1| Zea mays CL1074_1 mRNA sequence
          Length = 1537

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 68/77 (88%)
 Strand = Plus / Minus

                                                                        
Query: 332  gtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgt 391
            ||||||||||| || || |||||||| ||  |||||||||| |||| |||||||||||||
Sbjct: 1166 gtcctgctgttctctgcagccctcacttgttggaagtatgggtgtgtcatagcttcacgt 1107

                             
Query: 392  gcagtgagcctgtcctg 408
            ||||| |||||||||||
Sbjct: 1106 gcagtaagcctgtcctg 1090
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>emb|Y11526.1|ZMCK2 Z.mays mRNA for casein kinase II alpha subunit
          Length = 1388

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                              
Query: 362 aggaagtatggatgtgccatagcttcacgtgcagtgagcctgtcctggtga 412
           |||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct: 981 aggaagtagggatgtgccatagcttcacgtgcagtgagcctatcttggtga 931
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>dbj|AB213316.1| Lolium perenne Lpck2a-1 mRNA for casein protein kinase 2 alpha
            subunit, complete cds
          Length = 1629

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 69/79 (87%)
 Strand = Plus / Minus

                                                                        
Query: 334  cctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgtgc 393
            |||||||||||| || ||  |||| || |||||||||||||| |||||||||||||| ||
Sbjct: 1225 cctgctgttttccgctgctttcacttggaggaagtatggatgcgccatagcttcacgcgc 1166

                               
Query: 394  agtgagcctgtcctggtga 412
            ||||||||| || ||||||
Sbjct: 1165 agtgagcctatcttggtga 1147
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>gb|AY106259.1| Zea mays PCO082342 mRNA sequence
          Length = 1669

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 48/51 (94%)
 Strand = Plus / Minus

                                                               
Query: 362  aggaagtatggatgtgccatagcttcacgtgcagtgagcctgtcctggtga 412
            |||||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct: 1269 aggaagtagggatgtgccatagcttcacgtgcagtgagcctatcttggtga 1219
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>ref|NM_194133.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1484

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                        
Query: 319  ctattgcgcgcgagtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgc 378
            |||||| || |||| ||| ||||| || || |||||||| || || |||||||| |||||
Sbjct: 1218 ctattgtgcacgaggcctactgttctccgcagccctcacttggagaaagtatgggtgtgc 1159

                                              
Query: 379  catagcttcacgtgcagtgagcctgtcctggtga 412
            |||||||||||||||||| || || |||||||||
Sbjct: 1158 catagcttcacgtgcagtaagtctatcctggtga 1125
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>dbj|AK070271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047E06, full
            insert sequence
          Length = 1485

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                        
Query: 319  ctattgcgcgcgagtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgc 378
            |||||| || |||| ||| ||||| || || |||||||| || || |||||||| |||||
Sbjct: 1219 ctattgtgcacgaggcctactgttctccgcagccctcacttggagaaagtatgggtgtgc 1160

                                              
Query: 379  catagcttcacgtgcagtgagcctgtcctggtga 412
            |||||||||||||||||| || || |||||||||
Sbjct: 1159 catagcttcacgtgcagtaagtctatcctggtga 1126
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>gb|AF239819.1| Zea mays protein kinase CK2 catalytic subunit CK2 alpha-3 mRNA,
            complete cds
          Length = 1540

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                        
Query: 336  tgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgtgcag 395
            ||||||| || || |||||||| ||  |||||||||| |||| |||||||||||||||||
Sbjct: 1161 tgctgttctctgcagccctcacttgttggaagtatgggtgtgtcatagcttcacgtgcag 1102

                         
Query: 396  tgagcctgtcctg 408
            | |||||||||||
Sbjct: 1101 taagcctgtcctg 1089
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>dbj|D29696.1|RICYK8 Oryza sativa mRNA, partial homologous to casein kinase II-alpha
           gene
          Length = 341

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 319 ctattgcgcgcgagtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgc 378
           |||||| || ||||  || ||||| || || |||||||| || || |||||||| |||||
Sbjct: 184 ctattgtgcacgaggnctnctgttctccgcagccctcacttggagaaagtatgggtgtgc 125

                                             
Query: 379 catagcttcacgtgcagtgagcctgtcctggtga 412
           |||||||||||||||||| || || |||||||||
Sbjct: 124 catagcttcacgtgcagtaagtctatcctggtga 91
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>gb|BT024107.1| Zea mays clone EL01N0520F10 mRNA sequence
          Length = 1569

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 47/51 (92%)
 Strand = Plus / Minus

                                                               
Query: 362  aggaagtatggatgtgccatagcttcacgtgcagtgagcctgtcctggtga 412
            |||||||| ||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 1185 aggaagtagggatgtgccatagcttcccgtgcagtaagcctgtcttggtga 1135
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>gb|AF042199.1|AF042199 Oryza sativa casein kinase mRNA, partial cds
          Length = 819

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 79/94 (84%)
 Strand = Plus / Minus

                                                                       
Query: 319 ctattgcgcgcgagtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgc 378
           |||||| || |||| ||| ||||| || || |||||| | || || |||||||| |||||
Sbjct: 547 ctattgtgcacgaggcctactgttctccgcagccctcccttggagaaagtatgggtgtgc 488

                                             
Query: 379 catagcttcacgtgcagtgagcctgtcctggtga 412
           |||||||||||||||||| || || |||||||||
Sbjct: 487 catagcttcacgtgcagtaagtctatcctggtga 454
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>gb|AF517838.1| Lilium davidii CK2 catalytic alpha subunit mRNA, complete cds
          Length = 1480

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 329  cgagtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttca 388
            |||||||||||||| || || || |||||||| ||||| |||||||||| ||| ||||| 
Sbjct: 1129 cgagtcctgctgttctctgctgctctcacctgaaggaaatatggatgtgtcattgcttct 1070

                    
Query: 389  cgtgcagt 396
            ||||||||
Sbjct: 1069 cgtgcagt 1062
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>gb|AF271237.1|AF271237 Zea mays casein kinase II alpha subunit mRNA, complete cds
          Length = 1170

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 332  gtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgt 391
            ||||||||||| |||||||| ||||| ||  ||||||| || || | |||||||||| ||
Sbjct: 1025 gtcctgctgttctcagcggctctcacttgttggaagtacgggtgcgtcatagcttcaagt 966

                             
Query: 392  gcagtgagcctgtcctg 408
            ||||| ||||| |||||
Sbjct: 965  gcagtaagcctctcctg 949
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>emb|X61387.1|ZMACK2 Z.mays ZMACK2 mRNA for casein kinase II alpha subunit
          Length = 1169

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 332  gtcctgctgttttcagcggccctcacctgcaggaagtatggatgtgccatagcttcacgt 391
            ||||||||||| |||||||| ||||| ||  ||||||| || || | |||||||||| ||
Sbjct: 1024 gtcctgctgttctcagcggctctcacttgttggaagtacgggtgcgtcatagcttcaagt 965

                             
Query: 392  gcagtgagcctgtcctg 408
            ||||| ||||| |||||
Sbjct: 964  gcagtaagcctctcctg 948
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>gb|DQ157464.1| Oryza sativa (indica cultivar-group) strain Suphan Buri 1 Hd6 gene,
            complete cds
          Length = 6832

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 378  ccatagcttcacgtgcagtgagcctgtcctggtga 412
            ||||||||||||||||||||||||| || ||||||
Sbjct: 5554 ccatagcttcacgtgcagtgagcctatcttggtga 5520
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>gb|DQ157463.1| Oryza sativa (indica cultivar-group) strain KDML 105 Hd6 gene,
            complete cds
          Length = 6833

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 378  ccatagcttcacgtgcagtgagcctgtcctggtga 412
            ||||||||||||||||||||||||| || ||||||
Sbjct: 5555 ccatagcttcacgtgcagtgagcctatcttggtga 5521
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 378      ccatagcttcacgtgcagtgagcctgtcctggtga 412
                ||||||||||||||||||||||||| || ||||||
Sbjct: 31205795 ccatagcttcacgtgcagtgagcctatcttggtga 31205829
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>gb|AC090713.6| Oryza sativa chromosome 3 BAC OSJNBa0002J24 genomic sequence, complete
             sequence
          Length = 146022

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 378   ccatagcttcacgtgcagtgagcctgtcctggtga 412
             ||||||||||||||||||||||||| || ||||||
Sbjct: 13036 ccatagcttcacgtgcagtgagcctatcttggtga 13070
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>gb|AC084282.6| Oryza sativa chromosome 3 BAC OSJNBb0048A17 genomic sequence, complete
              sequence
          Length = 128017

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 378    ccatagcttcacgtgcagtgagcctgtcctggtga 412
              ||||||||||||||||||||||||| || ||||||
Sbjct: 126429 ccatagcttcacgtgcagtgagcctatcttggtga 126463
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 378      ccatagcttcacgtgcagtgagcctgtcctggtga 412
                ||||||||||||||||||||||||| || ||||||
Sbjct: 31296311 ccatagcttcacgtgcagtgagcctatcttggtga 31296345
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>dbj|AB036786.1| Oryza sativa (indica cultivar-group) Kasalath OSCKA2 gene for casein
            kinase II alpha subunit, complete cds
          Length = 6930

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 378  ccatagcttcacgtgcagtgagcctgtcctggtga 412
            ||||||||||||||||||||||||| || ||||||
Sbjct: 5559 ccatagcttcacgtgcagtgagcctatcttggtga 5525
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>dbj|AB036785.1| Oryza sativa (japonica cultivar-group) Nipponbare OSCKA2 gene for
            casein kinase II alpha subunit, complete cds
          Length = 6929

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 378  ccatagcttcacgtgcagtgagcctgtcctggtga 412
            ||||||||||||||||||||||||| || ||||||
Sbjct: 5558 ccatagcttcacgtgcagtgagcctatcttggtga 5524
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>ref|XM_623394.1| PREDICTED: Apis mellifera similar to casein kinase II alpha subunit
            (LOC409767), mRNA
          Length = 1487

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 371  ggatgtgccatagcttcacgtgcagtgag 399
            |||||| ||||||||||||||||||||||
Sbjct: 1268 ggatgttccatagcttcacgtgcagtgag 1240
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>ref|XM_623345.1| PREDICTED: Apis mellifera similar to casein kinase II alpha subunit
            (LOC409767), mRNA
          Length = 1436

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 371  ggatgtgccatagcttcacgtgcagtgag 399
            |||||| ||||||||||||||||||||||
Sbjct: 1188 ggatgttccatagcttcacgtgcagtgag 1160
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>ref|XM_393260.2| PREDICTED: Apis mellifera similar to casein kinase II alpha subunit
            (LOC409767), mRNA
          Length = 1407

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 371  ggatgtgccatagcttcacgtgcagtgag 399
            |||||| ||||||||||||||||||||||
Sbjct: 1188 ggatgttccatagcttcacgtgcagtgag 1160
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 378    ccatagcttcacgtgcagtgagcctgtcctggtga 412
              ||||||||||||||||||| || || |||||||||
Sbjct: 799117 ccatagcttcacgtgcagtaagtctatcctggtga 799151
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>dbj|AP005244.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1513_F02
          Length = 126845

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 378    ccatagcttcacgtgcagtgagcctgtcctggtga 412
              ||||||||||||||||||| || || |||||||||
Sbjct: 118924 ccatagcttcacgtgcagtaagtctatcctggtga 118958
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>dbj|AK120259.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013046C24, full
            insert sequence
          Length = 1449

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                           
Query: 365  aagtatggatgtgccatagcttcacgtgcagtgagcctgtcctggtg 411
            ||||| ||||| |||||||||||||| || || |||||||| |||||
Sbjct: 1188 aagtagggatgcgccatagcttcacgagcggtcagcctgtcatggtg 1142
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>dbj|AK058359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-F03, full
           insert sequence
          Length = 918

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 365 aagtatggatgtgccatagcttcacgtgcagtgagcctgtcctggtg 411
           ||||| ||||| |||||||||||||| || || |||||||| |||||
Sbjct: 657 aagtagggatgcgccatagcttcacgagcggtcagcctgtcatggtg 611
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>gb|AC092981.3| Homo sapiens 3 BAC RP11-305I9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 160000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 125    gtttccatacacaaacaacaa 145
              |||||||||||||||||||||
Sbjct: 138753 gtttccatacacaaacaacaa 138773
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>gb|AC109211.10| Mus musculus chromosome 8, clone RP23-27N18, complete sequence
          Length = 212670

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 125   gtttccatacacaaacaacaa 145
             |||||||||||||||||||||
Sbjct: 54298 gtttccatacacaaacaacaa 54278
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>gb|AY686597.1| Drosophila virilis Dscam gene, exons 3 through 16 and partial cds,
             alternatively spliced
          Length = 43940

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 68    tacaatattaccgaacacgttaca 91
             ||||||||| ||||||||||||||
Sbjct: 43795 tacaatatttccgaacacgttaca 43818
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>gb|AC112945.9| Mus musculus chromosome 15, clone RP23-382O21, complete sequence
          Length = 189335

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    aggtttccatacacaaacaa 142
              ||||||||||||||||||||
Sbjct: 179197 aggtttccatacacaaacaa 179178
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>gb|AC166334.8| Mus musculus chromosome 7, clone RP23-470P9, complete sequence
          Length = 171861

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 132   tacacaaacaacaagagcaaatca 155
             |||||||||| |||||||||||||
Sbjct: 97430 tacacaaacagcaagagcaaatca 97453
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>gb|AC157552.10| Mus musculus chromosome 7, clone RP23-89C10, complete sequence
          Length = 195587

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 132  tacacaaacaacaagagcaaatca 155
            |||||||||| |||||||||||||
Sbjct: 6871 tacacaaacagcaagagcaaatca 6894
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>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence
          Length = 202155

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 123   aggtttccatacacaaacaa 142
             ||||||||||||||||||||
Sbjct: 51950 aggtttccatacacaaacaa 51931
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>gb|AC092415.3| Homo sapiens chromosome 3 clone RP11-9A14, complete sequence
          Length = 181664

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    ggcacacaccacacaggctc 201
              ||||||||||||||||||||
Sbjct: 147455 ggcacacaccacacaggctc 147474


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,755,117
Number of Sequences: 3902068
Number of extensions: 3755117
Number of successful extensions: 59364
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59261
Number of HSP's gapped (non-prelim): 99
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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