>CHD9_HUMAN (Q3L8U1) Chromodomain-helicase-DNA-binding protein 9 (EC 3.6.1.-)|
            (ATP-dependent helicase CHD9) (CHD-9) (Chromatin-related
            mesenchymal modulator) (CReMM) (Chromatin remodeling
            factor CHROM1) (Peroxisomal proliferator-activated
            receptor A-inter
          Length = 2897

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
 Frame = +2

Query: 194  DSRTSACELM*DKDCNHDTSTGFRTTSSDSATWACMSSRSTSWPSFGSEVTNSASSLSR* 373
            DS  S+C        +  + +  R+ SS S++ +C S+ S+S  S  S  ++S+SS    
Sbjct: 2137 DSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSTSSSSSSSSSSSEES 2196

Query: 374  END*ISTRKMSRSNKSNIFLQGSVLS----------SHDLHNDLS*TIAVLQRSLAFTTR 523
            ++D    +K   +     + + SV S          S  ++N    +  +LQ        
Sbjct: 2197 DSDEEEAQKRESTTHMKAYDEESVASLSTTQDETQDSFQMNNGTPESAYILQGGYMLAAS 2256

Query: 524  LWIQKRM 544
             W + R+
Sbjct: 2257 YWPKDRV 2263



 Score = 29.3 bits (64), Expect = 9.8
 Identities = 27/88 (30%), Positives = 43/88 (48%)
 Frame = +2

Query: 161  PAERAFFVLLRDSRTSACELM*DKDCNHDTSTGFRTTSSDSATWACMSSRSTSWPSFGSE 340
            PA +   V  R S +S+     D D + + S+    +SS S++ +C  SRS S  S  S 
Sbjct: 2116 PASKKPRVHKRGSESSS-----DSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSS 2170

Query: 341  VTNSASSLSR*END*ISTRKMSRSNKSN 424
             ++++SS S       ST   S S+ S+
Sbjct: 2171 CSSASSSSSS------STSSSSSSSSSS 2192

>YR21_TORVR (P25245) Hypothetical 20.2 kDa protein in RNA2|
          Length = 201

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
 Frame = -3

Query: 464 GGHGKKARSPVRK------YWTCXXXXXXXXXXXXXXXXXXSWRNLSLRYQRKARMCSSM 303
           GG G+ A S  R+      +W                    +    +     +ARMCS M
Sbjct: 63  GGGGRAATSRSRRILLMAAFWAARRGASCAALTAARAAAFLALAMAAYLAALRARMCSRM 122

Query: 302 TCTPMSRNLTMLYGSLCLC 246
            C P++ +L     + CLC
Sbjct: 123 ICWPLTASLFFRAANCCLC 141

>CELR2_MOUSE (Q9R0M0) Cadherin EGF LAG seven-pass G-type receptor 2 precursor|
            (Flamingo 1) (mFmi1)
          Length = 2920

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 317  MCSSMTCTPMSRNLTMLYGSLCLCRGC 237
            +C S TC P  R  +   G  CLCRGC
Sbjct: 1292 LCYSRTCGPHGRCRSREGGYTCLCRGC 1318

>PLSX_BRAJA (Q89K88) Fatty acid/phospholipid synthesis protein plsX|
          Length = 353

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/80 (23%), Positives = 38/80 (47%)
 Frame = -2

Query: 363 KELAEFVTSLPKEGQDVLLDDMHAHVAESDDVVRKPVLVSWLQSLSYISSQADVRESRNN 184
           K LA+ + +    G ++ L        +  +++R  +  SWL  L Y+ +++  +  R+ 
Sbjct: 224 KGLADVIVAEGFSG-NIALKAAEGTARQMAELLRNEMQRSWLSKLGYLFARSAFQALRDK 282

Query: 183 TKNARSAGGVELSLNRTIAR 124
               +S GGV L LN  + +
Sbjct: 283 MDPNKSNGGVFLGLNGLVVK 302

>VIT1_CHICK (P87498) Vitellogenin-1 precursor (Vitellogenin I) (Minor|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP42]
          Length = 1912

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 20/60 (33%), Positives = 36/60 (60%)
 Frame = +2

Query: 245  DTSTGFRTTSSDSATWACMSSRSTSWPSFGSEVTNSASSLSR*END*ISTRKMSRSNKSN 424
            D+S+   ++SS S++ +   S S+S  S  S+ ++S+SS S   +    ++  SRS+KSN
Sbjct: 1149 DSSSSGSSSSSSSSSSSSSDSSSSSRSSSSSDSSSSSSSSSSSSSS--KSKSSSRSSKSN 1206

>YEN1_SCHPO (O13695) Hypothetical serine-rich protein C11G7.01 in chromosome I|
          Length = 536

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 32/124 (25%), Positives = 52/124 (41%)
 Frame = +2

Query: 149 SSTPPAERAFFVLLRDSRTSACELM*DKDCNHDTSTGFRTTSSDSATWACMSSRSTSWPS 328
           S T PA  +F   L  S +              +S+    TSS SAT    SS S +  S
Sbjct: 70  SFTSPASSSFITSLVSSSSQ-----------QSSSSSASLTSSSSATLTSSSSASPTSSS 118

Query: 329 FGSEVTNSASSLSR*END*ISTRKMSRSNKSNIFLQGSVLSSHDLHNDLS*TIAVLQRSL 508
               +++S+SSL       +++   S  + S++    SV SS   ++  S T + L  S 
Sbjct: 119 SSHALSSSSSSL-------VASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSSA 171

Query: 509 AFTT 520
           +  +
Sbjct: 172 SIVS 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,744,194
Number of Sequences: 219361
Number of extensions: 1701264
Number of successful extensions: 5056
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5043
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)