ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14j15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009619.1| Triticum aestivum clone wre1n.pk0123.c3:fis, full insert mRNA sequence Length = 1508 Score = 975 bits (492), Expect = 0.0 Identities = 669/722 (92%), Gaps = 12/722 (1%) Strand = Plus / Minus Query: 16 atatgatacaggtgatatcaactaggaaaagaaagaattggacgacaagaattcaacaag 75 |||||||||| ||||||||||| || |||||||||||| ||||||||||||| || Sbjct: 1376 atatgatacatgtgatatcaaccag-----gaaagaattggaaaacaagaattcaactag 1322 Query: 76 g-aactgtaccgttgga---taaattacaccaaacatggggtagaaaacacttaagagga 131 | |||||||||| |||| ||| ||||| ||||||| ||||| ||| ||| |||||| | Sbjct: 1321 gcaactgtaccggtggatggtaacttacagcaaacat-gggtaaaaaccac-taagagaa 1264 Query: 132 ctctgcatggtggaagggtggagctatagggagaagagccccaacctgccgagtaaaagc 191 ||||||||| ||||||||||||||| |||||| |||||||||||||||||| ||||| || Sbjct: 1263 ctctgcatgatggaagggtggagctttagggacaagagccccaacctgccg-gtaaacgc 1205 Query: 192 catctatcctgccgcggtaattcaggtgcagcactatatgtgctcctcgcctcctcagac 251 ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1204 catctatcctgccgccgtaattcaggtgcagcactacatgtgctcctcgcctcctcagac 1145 Query: 252 tctaccgaactatttgattgttccagcagccagagcaaagatcagataagccttagctca 311 |||| | |||| ||||||| ||||||||| |||||| ||||||||||||||| ||||| Sbjct: 1144 tctaacaaactgcttgattgctccagcagctagagcagagatcagataagcctcagctcg 1085 Query: 312 tactcaccagccattgtgatgtatctaacccaaggcagagcctgatatccacttttctct 371 || ||||| ||||||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct: 1084 tattcaccggccattgtgatatacctaacccaagggagggcctggtatccacttttctcg 1025 Query: 372 ataactttcagataacgaacctgaatgcctgaaacggtaaaatagggtatctcaaatttc 431 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1024 atgactttcagataacgaacctgaatgcctgaaacggtaaaatagggtatctcaaatttc 965 Query: 432 acacgtattggagccttcttttcaggggttgcttcttccgaggtaatgctgggaaggcta 491 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 964 acacgtattggagccttcttttcaggggttgcttcttccgaggtaatgctgggaaggcta 905 Query: 492 aattctgctctacacatatattccttgccaccaggaaatgatttgattttccagaccatt 551 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 904 aactctgctctacacatatattccttgccaccaggaaatgatttaattttccagaccatt 845 Query: 552 gcgtctctctcaggtgcatatgccgcagaacccattgaagtccttatatttgggtttgtg 611 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 844 gcgtctctctcaggtgcatatgccgcagaacccattgaagtccttatatttgggtttgtc 785 Query: 612 gcatcatagggcacaggcacttcaatttctacatttgttccggtgcttctttccttgaac 671 ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 784 gcatcatagggtacaggtacttcaatttctacatttgttccggtgcttctttccttgaac 725 Query: 672 tggctccttgccttcaccataatctctatccggcttcttgaatgcttctcaacttgtgct 731 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 724 tggctccttgccttcaccatgatctctatccggcttcttgaatgcttctcaacttgtgct 665 Query: 732 tc 733 || Sbjct: 664 tc 663
>dbj|AK065138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A10, full insert sequence Length = 1899 Score = 456 bits (230), Expect = e-125 Identities = 377/426 (88%) Strand = Plus / Minus Query: 308 ctcatactcaccagccattgtgatgtatctaacccaaggcagagcctgatatccactttt 367 |||||| |||||||||||||||||||||| ||||||||| || |||||||||||||| || Sbjct: 1499 ctcatattcaccagccattgtgatgtatcgaacccaaggaagggcctgatatccactctt 1440 Query: 368 ctctataactttcagataacgaacctgaatgcctgaaacggtaaaatagggtatctcaaa 427 || || | ||||||||| ||||||||||| || || ||||||||||| ||||||||||| Sbjct: 1439 ttcgatgattttcagatagcgaacctgaatacccgacacggtaaaatacggtatctcaaa 1380 Query: 428 tttcacacgtattggagccttcttttcaggggttgcttcttccgaggtaatgctgggaag 487 |||||||||||| ||||||||||||||||| || | ||||| || || ||||| ||||| Sbjct: 1379 tttcacacgtatcggagccttcttttcaggcattccatcttctgatgttatgcttggaag 1320 Query: 488 gctaaattctgctctacacatatattccttgccaccaggaaatgatttgattttccagac 547 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1319 gctaaattctgctctacacatatattccttgccaccaggaaatgattttattttccagac 1260 Query: 548 cattgcgtctctctcaggtgcatatgccgcagaacccattgaagtccttatatttgggtt 607 ||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 1259 catcgcatctctctcaggtgcatatgccgcagagcccattgaagttcttatatttgggtt 1200 Query: 608 tgtggcatcatagggcacaggcacttcaatttctacatttgttccggtgcttctttcctt 667 ||| | ||| | ||||| || ||||||||||||||||||||| | ||||| ||||| || Sbjct: 1199 tgtcgaatcctcaggcactggtacttcaatttctacatttgttgctgtgctcctttcttt 1140 Query: 668 gaactggctccttgccttcaccataatctctatccggcttcttgaatgcttctcaacttg 727 |||||| || |||| |||||| | |||| |||||| ||||||||||| ||||| ||||| Sbjct: 1139 gaactgacttcttgtcttcactgtgatctgtatccgacttcttgaatgtttctccacttg 1080 Query: 728 tgcttc 733 |||||| Sbjct: 1079 tgcttc 1074
>gb|AY109738.1| Zea mays CL9467_1 mRNA sequence Length = 1356 Score = 406 bits (205), Expect = e-110 Identities = 379/437 (86%) Strand = Plus / Plus Query: 297 ataagccttagctcatactcaccagccattgtgatgtatctaacccaaggcagagcctga 356 ||||| || |||||||| || |||||||| ||||| ||||||||||| || || ||||| Sbjct: 442 ataagtctcagctcatattcgccagccatcgtgatatatctaacccaggggagtgcctgg 501 Query: 357 tatccacttttctctataactttcagataacgaacctgaatgcctgaaacggtaaaatag 416 || ||||| || || || | ||||||||||| |||||||| ||||| ||||| ||||| Sbjct: 502 taaccactcttttcaattatcttcagataacggacctgaatacctgatacggtgaaatat 561 Query: 417 ggtatctcaaatttcacacgtattggagccttcttttcaggggttgcttcttccgaggta 476 ||||||||||||||||| |||||||| ||||||||||| |||| ||||||||| || Sbjct: 562 ggtatctcaaatttcactcgtattggtgccttcttttctggggccccttcttccgctgtt 621 Query: 477 atgctgggaaggctaaattctgctctacacatatattccttgccaccaggaaatgatttg 536 ||||| ||||| |||||||||||||| ||||| ||||||||||||||||| |||||||| Sbjct: 622 atgctaggaagactaaattctgctctgcacatgtattccttgccaccagggaatgatttt 681 Query: 537 attttccagaccattgcgtctctctcaggtgcatatgccgcagaacccattgaagtcctt 596 | ||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||| Sbjct: 682 actttccagaccattgcatctctctcaggagcatatgcagcagaacccattgaagttctt 741 Query: 597 atatttgggtttgtggcatcatagggcacaggcacttcaatttctacatttgttccggtg 656 |||||||||||||||||||| | || ||||||||||||||||| ||||||||| | ||| Sbjct: 742 atatttgggtttgtggcatctgaaggaacaggcacttcaatttcaacatttgttgctgtg 801 Query: 657 cttctttccttgaactggctccttgccttcaccataatctctatccggcttcttgaatgc 716 ||||||||||||||||| ||||||||||||||||| | ||||| |||||||| ||||| Sbjct: 802 cttctttccttgaactgactccttgccttcaccatgagttctatacggcttctagaatgt 861 Query: 717 ttctcaacttgtgcttc 733 ||||||| |||||||| Sbjct: 862 ttctcaatctgtgcttc 878
>ref|NM_192230.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1290 Score = 363 bits (183), Expect = 5e-97 Identities = 360/419 (85%) Strand = Plus / Minus Query: 315 tcaccagccattgtgatgtatctaacccaaggcagagcctgatatccacttttctctata 374 |||||||||||||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct: 1268 tcaccagccattgtaatgtatctaacccaaggaagcgcctggtacccactcttttcaatg 1209 Query: 375 actttcagataacgaacctgaatgcctgaaacggtaaaatagggtatctcaaatttcaca 434 | |||||||| ||||||||||| || || || || ||||| ||||||||||||||||| Sbjct: 1208 atcttcagatagcgaacctgaatacccgacacagtgaaatatggtatctcaaatttcact 1149 Query: 435 cgtattggagccttcttttcaggggttgcttcttccgaggtaatgctgggaaggctaaat 494 |||||||| |||||||||||||| | ||||||||| | || || || ||||| |||||| Sbjct: 1148 cgtattggtgccttcttttcaggagctgcttcttctgcagttatacttggaagactaaat 1089 Query: 495 tctgctctacacatatattccttgccaccaggaaatgatttgattttccagaccattgcg 554 || ||||| ||||| || ||||||||||||||||||||||| | ||||||||||||||| Sbjct: 1088 tcagctctgcacatgtaatccttgccaccaggaaatgattttactttccagaccattgca 1029 Query: 555 tctctctcaggtgcatatgccgcagaacccattgaagtccttatatttgggtttgtggca 614 |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| || ||| Sbjct: 1028 tctctctcaggtgcatatgcagcagagcccattgaagttcttatattagggttcgtagca 969 Query: 615 tcatagggcacaggcacttcaatttctacatttgttccggtgcttctttccttgaactgg 674 || | || ||||||||||||||||| ||||||||| | ||||| |||||||| ||||| Sbjct: 968 tctgaaggaacaggcacttcaatttcaacatttgttgctgtgctcctttccttaaactga 909 Query: 675 ctccttgccttcaccataatctctatccggcttcttgaatgcttctcaacttgtgcttc 733 || ||||| |||||||||| ||||| |||||||||||||| ||||||| ||||||||| Sbjct: 908 cttcttgctttcaccataagttctattcggcttcttgaatgtttctcaatttgtgcttc 850
>dbj|AK065538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030K02, full insert sequence Length = 1892 Score = 363 bits (183), Expect = 5e-97 Identities = 360/419 (85%) Strand = Plus / Minus Query: 315 tcaccagccattgtgatgtatctaacccaaggcagagcctgatatccacttttctctata 374 |||||||||||||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct: 1511 tcaccagccattgtaatgtatctaacccaaggaagcgcctggtacccactcttttcaatg 1452 Query: 375 actttcagataacgaacctgaatgcctgaaacggtaaaatagggtatctcaaatttcaca 434 | |||||||| ||||||||||| || || || || ||||| ||||||||||||||||| Sbjct: 1451 atcttcagatagcgaacctgaatacccgacacagtgaaatatggtatctcaaatttcact 1392 Query: 435 cgtattggagccttcttttcaggggttgcttcttccgaggtaatgctgggaaggctaaat 494 |||||||| |||||||||||||| | ||||||||| | || || || ||||| |||||| Sbjct: 1391 cgtattggtgccttcttttcaggagctgcttcttctgcagttatacttggaagactaaat 1332 Query: 495 tctgctctacacatatattccttgccaccaggaaatgatttgattttccagaccattgcg 554 || ||||| ||||| || ||||||||||||||||||||||| | ||||||||||||||| Sbjct: 1331 tcagctctgcacatgtaatccttgccaccaggaaatgattttactttccagaccattgca 1272 Query: 555 tctctctcaggtgcatatgccgcagaacccattgaagtccttatatttgggtttgtggca 614 |||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| || ||| Sbjct: 1271 tctctctcaggtgcatatgcagcagagcccattgaagttcttatattagggttcgtagca 1212 Query: 615 tcatagggcacaggcacttcaatttctacatttgttccggtgcttctttccttgaactgg 674 || | || ||||||||||||||||| ||||||||| | ||||| |||||||| ||||| Sbjct: 1211 tctgaaggaacaggcacttcaatttcaacatttgttgctgtgctcctttccttaaactga 1152 Query: 675 ctccttgccttcaccataatctctatccggcttcttgaatgcttctcaacttgtgcttc 733 || ||||| |||||||||| ||||| |||||||||||||| ||||||| ||||||||| Sbjct: 1151 cttcttgctttcaccataagttctattcggcttcttgaatgtttctcaatttgtgcttc 1093
>dbj|AK060762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A04, full insert sequence Length = 1867 Score = 228 bits (115), Expect = 2e-56 Identities = 193/219 (88%) Strand = Plus / Minus Query: 515 cttgccaccaggaaatgatttgattttccagaccattgcgtctctctcaggtgcatatgc 574 ||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||| Sbjct: 1301 cttgccaccaggaaatgattttactttccagaccattgcatctctctcaggtgcatatgc 1242 Query: 575 cgcagaacccattgaagtccttatatttgggtttgtggcatcatagggcacaggcacttc 634 ||||| ||||||||||| |||||||| ||||| || ||||| | || ||||||||||| Sbjct: 1241 agcagagcccattgaagttcttatattagggttcgtagcatctgaaggaacaggcacttc 1182 Query: 635 aatttctacatttgttccggtgcttctttccttgaactggctccttgccttcaccataat 694 |||||| ||||||||| | ||||| |||||||| ||||| || ||||| |||||||||| Sbjct: 1181 aatttcaacatttgttgctgtgctcctttccttaaactgacttcttgctttcaccataag 1122 Query: 695 ctctatccggcttcttgaatgcttctcaacttgtgcttc 733 ||||| |||||||||||||| ||||||| ||||||||| Sbjct: 1121 ttctattcggcttcttgaatgtttctcaatttgtgcttc 1083 Score = 135 bits (68), Expect = 2e-28 Identities = 158/188 (84%) Strand = Plus / Minus Query: 315 tcaccagccattgtgatgtatctaacccaaggcagagcctgatatccacttttctctata 374 |||||||||||||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct: 1487 tcaccagccattgtaatgtatctaacccaaggaagcgcctggtacccactcttttcaatg 1428 Query: 375 actttcagataacgaacctgaatgcctgaaacggtaaaatagggtatctcaaatttcaca 434 | |||||||| ||||||||||| || || || || ||||| ||||||||||||||||| Sbjct: 1427 atcttcagatagcgaacctgaatacccgacacagtgaaatatggtatctcaaatttcact 1368 Query: 435 cgtattggagccttcttttcaggggttgcttcttccgaggtaatgctgggaaggctaaat 494 |||||||| |||||||||||||| | ||||||||| | || || || ||||| |||||| Sbjct: 1367 cgtattggtgccttcttttcaggagctgcttcttctgcagttatacttggaagactaaat 1308 Query: 495 tctgctct 502 || ||||| Sbjct: 1307 tcagctct 1300
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 176 bits (89), Expect = 7e-41 Identities = 125/137 (91%) Strand = Plus / Plus Query: 514 ccttgccaccaggaaatgatttgattttccagaccattgcgtctctctcaggtgcatatg 573 |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| Sbjct: 28522 ccttgccaccaggaaatgattttattttccagaccatcgcatctctctcaggtgcatatg 28581 Query: 574 ccgcagaacccattgaagtccttatatttgggtttgtggcatcatagggcacaggcactt 633 ||||||| ||||||||||| ||||||||||||||||| | ||| | ||||| || |||| Sbjct: 28582 ccgcagagcccattgaagttcttatatttgggtttgtcgaatcctcaggcactggtactt 28641 Query: 634 caatttctacatttgtt 650 ||||||||||||||||| Sbjct: 28642 caatttctacatttgtt 28658 Score = 149 bits (75), Expect = 2e-32 Identities = 114/127 (89%) Strand = Plus / Plus Query: 390 acctgaatgcctgaaacggtaaaatagggtatctcaaatttcacacgtattggagccttc 449 |||||||| || || ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 28308 acctgaatacccgacacggtaaaatacggtatctcaaatttcacacgtatcggagccttc 28367 Query: 450 ttttcaggggttgcttcttccgaggtaatgctgggaaggctaaattctgctctacacata 509 |||||||| || | ||||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 28368 ttttcaggcattccatcttctgatgttatgcttggaaggctaaattctgctctacacata 28427 Query: 510 tattcct 516 ||||||| Sbjct: 28428 tattcct 28434 Score = 93.7 bits (47), Expect = 8e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 308 ctcatactcaccagccattgtgatgtatctaacccaaggcagagcctgatatccactttt 367 |||||| |||||||||||||||||||||| ||||||||| || |||||||||||||| || Sbjct: 28134 ctcatattcaccagccattgtgatgtatcgaacccaaggaagggcctgatatccactctt 28193 Query: 368 ctctataactttcagataacgaacctg 394 || || | ||||||||| |||||||| Sbjct: 28194 ttcgatgattttcagatagcgaacctg 28220 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 660 ctttccttgaactggctccttgccttcaccataatctctatccggcttcttgaatgcttc 719 ||||| |||||||| || |||| |||||| | |||| |||||| ||||||||||| ||| Sbjct: 28766 ctttctttgaactgacttcttgtcttcactgtgatctgtatccgacttcttgaatgtttc 28825 Query: 720 tcaacttgtgcttc 733 || ||||||||||| Sbjct: 28826 tccacttgtgcttc 28839
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 176 bits (89), Expect = 7e-41 Identities = 125/137 (91%) Strand = Plus / Plus Query: 514 ccttgccaccaggaaatgatttgattttccagaccattgcgtctctctcaggtgcatatg 573 |||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| Sbjct: 26746583 ccttgccaccaggaaatgattttattttccagaccatcgcatctctctcaggtgcatatg 26746642 Query: 574 ccgcagaacccattgaagtccttatatttgggtttgtggcatcatagggcacaggcactt 633 ||||||| ||||||||||| ||||||||||||||||| | ||| | ||||| || |||| Sbjct: 26746643 ccgcagagcccattgaagttcttatatttgggtttgtcgaatcctcaggcactggtactt 26746702 Query: 634 caatttctacatttgtt 650 ||||||||||||||||| Sbjct: 26746703 caatttctacatttgtt 26746719 Score = 149 bits (75), Expect = 2e-32 Identities = 114/127 (89%) Strand = Plus / Plus Query: 390 acctgaatgcctgaaacggtaaaatagggtatctcaaatttcacacgtattggagccttc 449 |||||||| || || ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 26746369 acctgaatacccgacacggtaaaatacggtatctcaaatttcacacgtatcggagccttc 26746428 Query: 450 ttttcaggggttgcttcttccgaggtaatgctgggaaggctaaattctgctctacacata 509 |||||||| || | ||||| || || ||||| ||||||||||||||||||||||||||| Sbjct: 26746429 ttttcaggcattccatcttctgatgttatgcttggaaggctaaattctgctctacacata 26746488 Query: 510 tattcct 516 ||||||| Sbjct: 26746489 tattcct 26746495 Score = 93.7 bits (47), Expect = 8e-16 Identities = 77/87 (88%) Strand = Plus / Plus Query: 308 ctcatactcaccagccattgtgatgtatctaacccaaggcagagcctgatatccactttt 367 |||||| |||||||||||||||||||||| ||||||||| || |||||||||||||| || Sbjct: 26746195 ctcatattcaccagccattgtgatgtatcgaacccaaggaagggcctgatatccactctt 26746254 Query: 368 ctctataactttcagataacgaacctg 394 || || | ||||||||| |||||||| Sbjct: 26746255 ttcgatgattttcagatagcgaacctg 26746281 Score = 60.0 bits (30), Expect = 1e-05 Identities = 63/74 (85%) Strand = Plus / Plus Query: 660 ctttccttgaactggctccttgccttcaccataatctctatccggcttcttgaatgcttc 719 ||||| |||||||| || |||| |||||| | |||| |||||| ||||||||||| ||| Sbjct: 26746827 ctttctttgaactgacttcttgtcttcactgtgatctgtatccgacttcttgaatgtttc 26746886 Query: 720 tcaacttgtgcttc 733 || ||||||||||| Sbjct: 26746887 tccacttgtgcttc 26746900
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 161 bits (81), Expect = 4e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 514 ccttgccaccaggaaatgatttgattttccagaccattgcgtctctctcaggtgcatatg 573 |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| Sbjct: 29162860 ccttgccaccaggaaatgattttactttccagaccattgcatctctctcaggtgcatatg 29162801 Query: 574 ccgcagaacccattgaagtccttatatttgggtttgtggcatcatagggcacaggcactt 633 | ||||| ||||||||||| |||||||| ||||| || ||||| | || |||||||||| Sbjct: 29162800 cagcagagcccattgaagttcttatattagggttcgtagcatctgaaggaacaggcactt 29162741 Query: 634 caatttctacatttgtt 650 ||||||| ||||||||| Sbjct: 29162740 caatttcaacatttgtt 29162724 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 390 acctgaatgcctgaaacggtaaaatagggtatctcaaatttcacacgtattggagccttc 449 |||||||| || || || || ||||| ||||||||||||||||| |||||||| |||||| Sbjct: 29163065 acctgaatacccgacacagtgaaatatggtatctcaaatttcactcgtattggtgccttc 29163006 Query: 450 ttttcaggggttgcttcttccgaggtaatgctgggaaggctaaattctgctctacacat 508 |||||||| | ||||||||| | || || || ||||| |||||||| ||||| ||||| Sbjct: 29163005 ttttcaggagctgcttcttctgcagttatacttggaagactaaattcagctctgcacat 29162947 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 660 ctttccttgaactggctccttgccttcaccataatctctatccggcttcttgaatgcttc 719 |||||||| ||||| || ||||| |||||||||| ||||| |||||||||||||| ||| Sbjct: 29162634 ctttccttaaactgacttcttgctttcaccataagttctattcggcttcttgaatgtttc 29162575 Query: 720 tcaacttgtgcttc 733 |||| ||||||||| Sbjct: 29162574 tcaatttgtgcttc 29162561 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 315 tcaccagccattgtgatgtatctaacccaaggcagagcctgatatccacttttctctata 374 |||||||||||||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct: 29163237 tcaccagccattgtaatgtatctaacccaaggaagcgcctggtacccactcttttcaatg 29163178 Query: 375 actttcagataacgaacctg 394 | |||||||| |||||||| Sbjct: 29163177 atcttcagatagcgaacctg 29163158
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 161 bits (81), Expect = 4e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 514 ccttgccaccaggaaatgatttgattttccagaccattgcgtctctctcaggtgcatatg 573 |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| Sbjct: 123226 ccttgccaccaggaaatgattttactttccagaccattgcatctctctcaggtgcatatg 123167 Query: 574 ccgcagaacccattgaagtccttatatttgggtttgtggcatcatagggcacaggcactt 633 | ||||| ||||||||||| |||||||| ||||| || ||||| | || |||||||||| Sbjct: 123166 cagcagagcccattgaagttcttatattagggttcgtagcatctgaaggaacaggcactt 123107 Query: 634 caatttctacatttgtt 650 ||||||| ||||||||| Sbjct: 123106 caatttcaacatttgtt 123090 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 390 acctgaatgcctgaaacggtaaaatagggtatctcaaatttcacacgtattggagccttc 449 |||||||| || || || || ||||| ||||||||||||||||| |||||||| |||||| Sbjct: 123431 acctgaatacccgacacagtgaaatatggtatctcaaatttcactcgtattggtgccttc 123372 Query: 450 ttttcaggggttgcttcttccgaggtaatgctgggaaggctaaattctgctctacacat 508 |||||||| | ||||||||| | || || || ||||| |||||||| ||||| ||||| Sbjct: 123371 ttttcaggagctgcttcttctgcagttatacttggaagactaaattcagctctgcacat 123313 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 660 ctttccttgaactggctccttgccttcaccataatctctatccggcttcttgaatgcttc 719 |||||||| ||||| || ||||| |||||||||| ||||| |||||||||||||| ||| Sbjct: 123000 ctttccttaaactgacttcttgctttcaccataagttctattcggcttcttgaatgtttc 122941 Query: 720 tcaacttgtgcttc 733 |||| ||||||||| Sbjct: 122940 tcaatttgtgcttc 122927 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 315 tcaccagccattgtgatgtatctaacccaaggcagagcctgatatccacttttctctata 374 |||||||||||||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct: 123603 tcaccagccattgtaatgtatctaacccaaggaagcgcctggtacccactcttttcaatg 123544 Query: 375 actttcagataacgaacctg 394 | |||||||| |||||||| Sbjct: 123543 atcttcagatagcgaacctg 123524
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 161 bits (81), Expect = 4e-36 Identities = 123/137 (89%) Strand = Plus / Minus Query: 514 ccttgccaccaggaaatgatttgattttccagaccattgcgtctctctcaggtgcatatg 573 |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| Sbjct: 8647 ccttgccaccaggaaatgattttactttccagaccattgcatctctctcaggtgcatatg 8588 Query: 574 ccgcagaacccattgaagtccttatatttgggtttgtggcatcatagggcacaggcactt 633 | ||||| ||||||||||| |||||||| ||||| || ||||| | || |||||||||| Sbjct: 8587 cagcagagcccattgaagttcttatattagggttcgtagcatctgaaggaacaggcactt 8528 Query: 634 caatttctacatttgtt 650 ||||||| ||||||||| Sbjct: 8527 caatttcaacatttgtt 8511 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 390 acctgaatgcctgaaacggtaaaatagggtatctcaaatttcacacgtattggagccttc 449 |||||||| || || || || ||||| ||||||||||||||||| |||||||| |||||| Sbjct: 8852 acctgaatacccgacacagtgaaatatggtatctcaaatttcactcgtattggtgccttc 8793 Query: 450 ttttcaggggttgcttcttccgaggtaatgctgggaaggctaaattctgctctacacat 508 |||||||| | ||||||||| | || || || ||||| |||||||| ||||| ||||| Sbjct: 8792 ttttcaggagctgcttcttctgcagttatacttggaagactaaattcagctctgcacat 8734 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 660 ctttccttgaactggctccttgccttcaccataatctctatccggcttcttgaatgcttc 719 |||||||| ||||| || ||||| |||||||||| ||||| |||||||||||||| ||| Sbjct: 8421 ctttccttaaactgacttcttgctttcaccataagttctattcggcttcttgaatgtttc 8362 Query: 720 tcaacttgtgcttc 733 |||| ||||||||| Sbjct: 8361 tcaatttgtgcttc 8348 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 315 tcaccagccattgtgatgtatctaacccaaggcagagcctgatatccacttttctctata 374 |||||||||||||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct: 9024 tcaccagccattgtaatgtatctaacccaaggaagcgcctggtacccactcttttcaatg 8965 Query: 375 actttcagataacgaacctg 394 | |||||||| |||||||| Sbjct: 8964 atcttcagatagcgaacctg 8945
>dbj|AP004918.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076a, complete sequence Length = 71794 Score = 93.7 bits (47), Expect = 8e-16 Identities = 71/79 (89%) Strand = Plus / Minus Query: 297 ataagccttagctcatactcaccagccattgtgatgtatctaacccaaggcagagcctga 356 ||||||||||| |||||||| ||||||||||| |||||||| ||||| || ||||||||| Sbjct: 60063 ataagccttagttcatactctccagccattgttatgtatctcacccacggaagagcctga 60004 Query: 357 tatccacttttctctataa 375 || ||||||||||| |||| Sbjct: 60003 tacccacttttctcaataa 59985 Score = 69.9 bits (35), Expect = 1e-08 Identities = 95/115 (82%) Strand = Plus / Minus Query: 402 gaaacggtaaaatagggtatctcaaatttcacacgtattggagccttcttttcaggggtt 461 ||||| |||||||| ||||| ||||||||||||||||| ||||| || | ||||||||| Sbjct: 59349 gaaacagtaaaataaggtatttcaaatttcacacgtataggagcttttctctcaggggtt 59290 Query: 462 gcttcttccgaggtaatgctgggaaggctaaattctgctctacacatatattcct 516 ||||| || | || || |||||||| | ||| |||||||| ||||||| |||| Sbjct: 59289 gcttcctcagctgttatactgggaagacgaaactctgctcttaacatatactcct 59235 Score = 48.1 bits (24), Expect = 0.041 Identities = 30/32 (93%) Strand = Plus / Minus Query: 561 tcaggtgcatatgccgcagaacccattgaagt 592 |||||||||||||| ||||| ||||||||||| Sbjct: 59083 tcaggtgcatatgctgcagatcccattgaagt 59052
>ref|NM_104761.3| Arabidopsis thaliana unknown protein AT1G60780 mRNA, complete cds Length = 1897 Score = 83.8 bits (42), Expect = 7e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 303 cttagctcatactcaccagccattgtgatgtatctaacccaaggcagagcctgatatcca 362 ||||| || |||||||||||||| || |||||||| ||||| || || || || || ||| Sbjct: 1551 cttagttcgtactcaccagccatggttatgtatctcacccatggaagtgcttggtaccca 1492 Query: 363 cttttctctataactttcagataacgaacctgaatgcctgaaacggtaaaatagggtatc 422 || ||||| |||| || || || ||||||||||| |||||||| || ||||| || ||| Sbjct: 1491 ctcttctcaataatctttaggtaccgaacctgaatccctgaaacagtgaaataagggatc 1432 Query: 423 tcaaatttcacacgtattggagcctt 448 |||||||| ||||| || |||||||| Sbjct: 1431 tcaaatttgacacggataggagcctt 1406
>gb|AY099652.1| Arabidopsis thaliana clathrin adaptor medium chain protein MU1B, putative (At1g60780) mRNA, complete cds Length = 1690 Score = 83.8 bits (42), Expect = 7e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 303 cttagctcatactcaccagccattgtgatgtatctaacccaaggcagagcctgatatcca 362 ||||| || |||||||||||||| || |||||||| ||||| || || || || || ||| Sbjct: 1470 cttagttcgtactcaccagccatggttatgtatctcacccatggaagtgcttggtaccca 1411 Query: 363 cttttctctataactttcagataacgaacctgaatgcctgaaacggtaaaatagggtatc 422 || ||||| |||| || || || ||||||||||| |||||||| || ||||| || ||| Sbjct: 1410 ctcttctcaataatctttaggtaccgaacctgaatccctgaaacagtgaaataagggatc 1351 Query: 423 tcaaatttcacacgtattggagcctt 448 |||||||| ||||| || |||||||| Sbjct: 1350 tcaaatttgacacggataggagcctt 1325
>gb|BT002144.1| Arabidopsis thaliana clathrin adaptor medium chain protein MU1B, putative (At1g60780) mRNA, complete cds Length = 1360 Score = 83.8 bits (42), Expect = 7e-13 Identities = 120/146 (82%) Strand = Plus / Minus Query: 303 cttagctcatactcaccagccattgtgatgtatctaacccaaggcagagcctgatatcca 362 ||||| || |||||||||||||| || |||||||| ||||| || || || || || ||| Sbjct: 1277 cttagttcgtactcaccagccatggttatgtatctcacccatggaagtgcttggtaccca 1218 Query: 363 cttttctctataactttcagataacgaacctgaatgcctgaaacggtaaaatagggtatc 422 || ||||| |||| || || || ||||||||||| |||||||| || ||||| || ||| Sbjct: 1217 ctcttctcaataatctttaggtaccgaacctgaatccctgaaacagtgaaataagggatc 1158 Query: 423 tcaaatttcacacgtattggagcctt 448 |||||||| ||||| || |||||||| Sbjct: 1157 tcaaatttgacacggataggagcctt 1132
>dbj|AK173835.1| Ciona intestinalis cDNA, clone:cicl003i09, full insert sequence Length = 744 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 326 tgtgatgtatctaacccaaggcagagcctgatatccacttttctctat 373 ||||||||| || |||||||||||||| || ||||||||||||||||| Sbjct: 434 tgtgatgtacctcacccaaggcagagcttggtatccacttttctctat 387
>dbj|AK116666.1| Ciona intestinalis cDNA, clone:cicl015h18, full insert sequence Length = 1658 Score = 63.9 bits (32), Expect = 7e-07 Identities = 44/48 (91%) Strand = Plus / Minus Query: 326 tgtgatgtatctaacccaaggcagagcctgatatccacttttctctat 373 ||||||||| || |||||||||||||| || ||||||||||||||||| Sbjct: 1320 tgtgatgtacctcacccaaggcagagcttggtatccacttttctctat 1273
>ref|NM_060773.3| Caenorhabditis elegans UNCoordinated family member (unc-101) (unc-101) mRNA, complete cds Length = 1879 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 354 tgatatccacttttctctataactttcagataacgaacctgaatgcc 400 ||||||||||||||||| || | |||||||||||| ||||||||||| Sbjct: 1314 tgatatccacttttctcgatgattttcagataacggacctgaatgcc 1268
>ref|XM_740665.1| Plasmodium chabaudi chabaudi clathrin-adaptor medium chain (PC000656.01.0) partial mRNA Length = 1356 Score = 58.0 bits (29), Expect = 4e-05 Identities = 86/105 (81%) Strand = Plus / Minus Query: 326 tgtgatgtatctaacccaaggcagagcctgatatccacttttctctataactttcagata 385 |||||| |||||||||||||||| ||| ||||| |||||||| || |||| ||| | ||| Sbjct: 1323 tgtgatatatctaacccaaggcaaagcttgataaccacttttttcaataatttttaaata 1264 Query: 386 acgaacctgaatgcctgaaacggtaaaatagggtatctcaaattt 430 ||| || || |||||||| |||||||| || || |||||||| Sbjct: 1263 acgtacagttatacctgaaacagtaaaatatgggatttcaaattt 1219
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence Length = 120787 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 390 acctgaatgcctgaaacggtaaaatagggtatctcaaatttcacacgtattggagcctt 448 |||||||| |||||||| || ||||| || ||||||||||| ||||| || |||||||| Sbjct: 93457 acctgaatccctgaaacagtgaaataagggatctcaaatttgacacggataggagcctt 93515 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Plus Query: 303 cttagctcatactcaccagccattgtgatgtatctaaccca 343 ||||| || |||||||||||||| || |||||||| ||||| Sbjct: 93289 cttagttcgtactcaccagccatggttatgtatctcaccca 93329
>emb|Z83115.1|CEK11D2 Caenorhabditis elegans Cosmid K11D2, complete sequence Length = 26806 Score = 54.0 bits (27), Expect = 7e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 354 tgatatccacttttctctataactttcagataacgaacctgaa 396 ||||||||||||||||| || | |||||||||||| ||||||| Sbjct: 12186 tgatatccacttttctcgatgattttcagataacggacctgaa 12144
>gb|L26291.1|CELUNCA Caenorhabditis elegans (unc-101) mRNA, complete cds Length = 1883 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 354 tgatatccacttttctctataactttcagataacgaacctgaatgcc 400 |||||||| |||||||| || | |||||||||||| ||||||||||| Sbjct: 1285 tgatatcctcttttctcgatgattttcagataacggacctgaatgcc 1239
>ref|XM_725640.1| Plasmodium yoelii yoelii str. 17XNL clathrin coat assembly protein ap54 (PY02804) partial mRNA Length = 1380 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 326 tgtgatgtatctaacccaaggcagagcctgatatccactttt 367 |||||| |||||||||||||||| ||| ||||| |||||||| Sbjct: 1347 tgtgatatatctaacccaaggcaaagcttgataaccactttt 1306
>ref|XM_675242.1| Plasmodium berghei strain ANKA clathrin-adaptor medium chain, (PB001132.00.0) partial mRNA Length = 1377 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Minus Query: 326 tgtgatgtatctaacccaaggcagagcctgatatccactttt 367 |||||| |||||||||||||||| ||| ||||| |||||||| Sbjct: 1344 tgtgatatatctaacccaaggcaaagcttgataaccactttt 1303
>emb|CR760351.2| Xenopus tropicalis finished cDNA, clone TNeu104l10 Length = 1784 Score = 52.0 bits (26), Expect = 0.003 Identities = 50/58 (86%) Strand = Plus / Minus Query: 387 cgaacctgaatgcctgaaacggtaaaatagggtatctcaaatttcacacgtattggag 444 ||||||||||| || ||| |||||||||||||||||||| ||||||| ||||||| Sbjct: 1320 cgaacctgaattccagaagttgtaaaatagggtatctcaaacttcacactgattggag 1263
>gb|BC061393.1| Xenopus tropicalis hypothetical protein MGC75970, mRNA (cDNA clone MGC:75970 IMAGE:5384222), complete cds Length = 1835 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 408 gtaaaatagggtatctcaaatttcacacgtattggag 444 |||||||||||||||||||| ||||||| ||||||| Sbjct: 1390 gtaaaatagggtatctcaaacttcacactgattggag 1354
>ref|NM_009678.1| Mus musculus adaptor protein complex AP-1, mu 2 subunit (Ap1m2), mRNA Length = 1703 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 339 acccaaggcagagcctgatatccacttttctctataactttcagataacgaacctgaatg 398 ||||| ||||| ||||| || ||||||||||| || | |||| ||||| ||||| ||| Sbjct: 1285 acccagggcagggcctggtacccacttttctcgatgatcttcatgtaacggacctggatg 1226 Query: 399 cctgaaacggtaaaatagggtatctcaaa 427 || ||||||||||| || || |||||||| Sbjct: 1225 ccagaaacggtaaagtatggaatctcaaa 1197
>ref|NM_203702.1| Xenopus tropicalis hypothetical protein MGC75970 (MGC75970), mRNA Length = 1835 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 408 gtaaaatagggtatctcaaatttcacacgtattggag 444 |||||||||||||||||||| ||||||| ||||||| Sbjct: 1390 gtaaaatagggtatctcaaacttcacactgattggag 1354
>gb|BC003704.1| Mus musculus adaptor protein complex AP-1, mu 2 subunit, mRNA (cDNA clone MGC:5661 IMAGE:3488231), complete cds Length = 1701 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 339 acccaaggcagagcctgatatccacttttctctataactttcagataacgaacctgaatg 398 ||||| ||||| ||||| || ||||||||||| || | |||| ||||| ||||| ||| Sbjct: 1250 acccagggcagggcctggtacccacttttctcgatgatcttcatgtaacggacctggatg 1191 Query: 399 cctgaaacggtaaaatagggtatctcaaa 427 || ||||||||||| || || |||||||| Sbjct: 1190 ccagaaacggtaaagtatggaatctcaaa 1162
>dbj|AK010478.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410012N05 product:adaptor protein complex AP-1, mu 2 subunit, full insert sequence Length = 1714 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 339 acccaaggcagagcctgatatccacttttctctataactttcagataacgaacctgaatg 398 ||||| ||||| ||||| || ||||||||||| || | |||| ||||| ||||| ||| Sbjct: 1296 acccagggcagggcctggtacccacttttctcgatgatcttcatgtaacggacctggatg 1237 Query: 399 cctgaaacggtaaaatagggtatctcaaa 427 || ||||||||||| || || |||||||| Sbjct: 1236 ccagaaacggtaaagtatggaatctcaaa 1208
>dbj|AK041933.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A630047K13 product:weakly similar to ADAPTOR-RELATED PROTEIN COMPLEX 1 MU 2 SUBUNIT (CLATHRIN COAT ASSEMBLY PROTEIN AP47 2) (CLATHRIN COAT ASSOCIATED PROTEIN AP47 2) (GOLGI ADAPTOR AP-1 47 KDA PROTEIN) (HA1 47 KDA SUBUNIT 2) (CLATHRIN ASSEMBLY PROTEIN ASSEMBLY PROTEIN COMPLEX 1 MEDIUM CHAIN 2) (AP-MU CHAIN FAMILY MEMBER MU1B) [Mus musculus], full insert sequence Length = 1352 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 339 acccaaggcagagcctgatatccacttttctctataactttcagataacgaacctgaatg 398 ||||| ||||| ||||| || ||||||||||| || | |||| ||||| ||||| ||| Sbjct: 89 acccagggcagggcctggtacccacttttctcgatgatcttcatgtaacggacctggatg 30 Query: 399 cctgaaacggtaaaatagggtatctcaaa 427 || ||||||||||| || || |||||||| Sbjct: 29 ccagaaacggtaaagtatggaatctcaaa 1
>dbj|AK082674.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length enriched library, clone:C230082G12 product:adaptor protein complex AP-1, mu 2 subunit, full insert sequence Length = 3602 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 339 acccaaggcagagcctgatatccacttttctctataactttcagataacgaacctgaatg 398 ||||| ||||| ||||| || ||||||||||| || | |||| ||||| ||||| ||| Sbjct: 1174 acccagggcagggcctggtacccacttttctcgatgatcttcatgtaacggacctggatg 1115 Query: 399 cctgaaacggtaaaatagggtatctcaaa 427 || ||||||||||| || || |||||||| Sbjct: 1114 ccagaaacggtaaagtatggaatctcaaa 1086
>gb|AF067146.1|AF067146 Mus musculus clathrin adaptor medium chain protein MU1B (Mu1b) mRNA, complete cds Length = 1703 Score = 50.1 bits (25), Expect = 0.010 Identities = 73/89 (82%) Strand = Plus / Minus Query: 339 acccaaggcagagcctgatatccacttttctctataactttcagataacgaacctgaatg 398 ||||| ||||| ||||| || ||||||||||| || | |||| ||||| ||||| ||| Sbjct: 1285 acccagggcagggcctggtacccacttttctcgatgatcttcatgtaacggacctggatg 1226 Query: 399 cctgaaacggtaaaatagggtatctcaaa 427 || ||||||||||| || || |||||||| Sbjct: 1225 ccagaaacggtaaagtatggaatctcaaa 1197
>gb|AY810336.1| Schistosoma japonicum SJCHGC09053 protein mRNA, partial cds Length = 1273 Score = 48.1 bits (24), Expect = 0.041 Identities = 24/24 (100%) Strand = Plus / Minus Query: 411 aaatagggtatctcaaatttcaca 434 |||||||||||||||||||||||| Sbjct: 1157 aaatagggtatctcaaatttcaca 1134
>ref|NM_001006850.1| Xenopus tropicalis adaptor-related protein complex 1, mu 1 subunit (ap1m1), mRNA Length = 3062 Score = 46.1 bits (23), Expect = 0.16 Identities = 59/71 (83%) Strand = Plus / Minus Query: 357 tatccacttttctctataactttcagataacgaacctgaatgcctgaaacggtaaaatag 416 |||||||||||||| || | |||| || ||||||||||| |||||||| || || ||| Sbjct: 1482 tatccacttttctcaatgatcttcatgtatcgaacctgaatccctgaaacagtgaagtag 1423 Query: 417 ggtatctcaaa 427 ||||| ||||| Sbjct: 1422 ggtatttcaaa 1412
>gb|BC076939.1| Xenopus tropicalis adaptor-related protein complex 1, mu 1 subunit, mRNA (cDNA clone MGC:89273 IMAGE:6977081), complete cds Length = 3062 Score = 46.1 bits (23), Expect = 0.16 Identities = 59/71 (83%) Strand = Plus / Minus Query: 357 tatccacttttctctataactttcagataacgaacctgaatgcctgaaacggtaaaatag 416 |||||||||||||| || | |||| || ||||||||||| |||||||| || || ||| Sbjct: 1482 tatccacttttctcaatgatcttcatgtatcgaacctgaatccctgaaacagtgaagtag 1423 Query: 417 ggtatctcaaa 427 ||||| ||||| Sbjct: 1422 ggtatttcaaa 1412
>ref|NM_100949.1| Arabidopsis thaliana unknown protein AT1G10730 mRNA, complete cds Length = 1287 Score = 44.1 bits (22), Expect = 0.64 Identities = 106/134 (79%) Strand = Plus / Minus Query: 312 tactcaccagccattgtgatgtatctaacccaaggcagagcctgatatccacttttctct 371 |||||||||||||| || || ||||| ||||| || | ||||| || ||||| ||||| Sbjct: 1268 tactcaccagccatggttatatatctcacccatggatgtgcctggtacccactcttctca 1209 Query: 372 ataactttcagataacgaacctgaatgcctgaaacggtaaaatagggtatctcaaatttc 431 || | ||||| || |||||||| || |||||||| | || | || ||||||||||| Sbjct: 1208 atgatcttcaggtatcgaacctgtattcctgaaactatgaattttgggatctcaaatttg 1149 Query: 432 acacgtattggagc 445 ||||| |||||||| Sbjct: 1148 acacggattggagc 1135
>gb|AY021050.1| Oryza sativa microsatellite MRG3375 containing (TA)X18, genomic sequence Length = 236 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Minus Query: 687 accataatctctatccggcttcttgaatgc 716 ||||||||||||| || ||||||||||||| Sbjct: 235 accataatctctagcctgcttcttgaatgc 206
>ref|XM_660658.1| Cryptosporidium hominis TU502 clathrin-adaptor medium chain (Chro.70304) partial mRNA Length = 1362 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 330 atgtatctaacccaaggcagagcctgatatccacttttctct 371 |||||||| ||||| || |||||||||||||| || |||||| Sbjct: 1325 atgtatctcacccatggaagagcctgatatccgctcttctct 1284
>ref|XM_784523.1| PREDICTED: Strongylocentrotus purpuratus similar to adaptor-related protein complex 1, mu 1 subunit (LOC584669), mRNA Length = 1179 Score = 44.1 bits (22), Expect = 0.64 Identities = 64/78 (82%) Strand = Plus / Minus Query: 326 tgtgatgtatctaacccaaggcagagcctgatatccacttttctctataactttcagata 385 |||||||||||| ||||| || || ||||| || ||||| ||||| || | |||| || Sbjct: 1146 tgtgatgtatctcacccatggtagtgcctggtaaccactcttctcaatgatcttcaagta 1087 Query: 386 acgaacctgaatgcctga 403 ||||||||||||||||| Sbjct: 1086 ccgaacctgaatgcctga 1069
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 687 accataatctctatccggcttcttga 712 |||||||||||||||| ||||||||| Sbjct: 22255352 accataatctctatcctgcttcttga 22255327
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Minus Query: 687 accataatctctatccggcttcttgaatgc 716 ||||||||||||| || ||||||||||||| Sbjct: 108785 accataatctctagcctgcttcttgaatgc 108756
>dbj|AP005873.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1370C05 Length = 148271 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Minus Query: 687 accataatctctatccggcttcttgaatgc 716 ||||||||||||| || ||||||||||||| Sbjct: 103394 accataatctctagcctgcttcttgaatgc 103365
>dbj|AP004187.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1435_F07 Length = 139041 Score = 44.1 bits (22), Expect = 0.64 Identities = 28/30 (93%) Strand = Plus / Minus Query: 687 accataatctctatccggcttcttgaatgc 716 ||||||||||||| || ||||||||||||| Sbjct: 57812 accataatctctagcctgcttcttgaatgc 57783
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 687 accataatctctatccggcttcttga 712 |||||||||||||||| ||||||||| Sbjct: 22183697 accataatctctatcctgcttcttga 22183672
>emb|AL731741.5|CNS08C7Q Oryza sativa chromosome 12, . BAC OJ1298_D03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 109610 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 687 accataatctctatccggcttcttga 712 |||||||||||||||| ||||||||| Sbjct: 106402 accataatctctatcctgcttcttga 106427
>emb|AL607108.17| Mouse DNA sequence from clone RP23-42F6 on chromosome 11, complete sequence Length = 202842 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Plus Query: 363 cttttctctataactttcagataacg 388 ||||||||||||||||| |||||||| Sbjct: 49443 cttttctctataactttgagataacg 49468
>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete sequence Length = 1347793 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 327 gtgatgtatctaacccaaggcagagcctg 355 ||||| |||||||||||||| |||||||| Sbjct: 735942 gtgatatatctaacccaaggaagagcctg 735970
>gb|BC070627.1| Xenopus laevis hypothetical protein MGC81419, mRNA (cDNA clone MGC:81419 IMAGE:6635357), complete cds Length = 2529 Score = 42.1 bits (21), Expect = 2.5 Identities = 81/101 (80%) Strand = Plus / Minus Query: 327 gtgatgtatctaacccaaggcagagcctgatatccacttttctctataactttcagataa 386 ||||| ||||| ||||| || || || || |||||||||||||| || | |||| || Sbjct: 1486 gtgatatatctgacccatggaagggcttggtatccacttttctcgatgatcttcatgtat 1427 Query: 387 cgaacctgaatgcctgaaacggtaaaatagggtatctcaaa 427 |||||||| || |||||||| || || |||||||| ||||| Sbjct: 1426 cgaacctggattcctgaaactgtgaagtagggtatttcaaa 1386 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 525 ggaaatgatttgattttccagacca 549 ||||||||||||||| ||||||||| Sbjct: 1294 ggaaatgatttgattgtccagacca 1270
>gb|AC123555.4| Mus musculus BAC clone RP23-139L20 from 1, complete sequence Length = 205623 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 675 ctccttgccttcaccataatc 695 ||||||||||||||||||||| Sbjct: 8664 ctccttgccttcaccataatc 8644
>gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 72022 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 508 tatattccttgccaccaggaaatga 532 ||||||||||||||| ||||||||| Sbjct: 25169 tatattccttgccacaaggaaatga 25193
>gb|AY117037.1| Toxoplasma gondii mu1 adaptin (mu1) mRNA, complete cds Length = 1644 Score = 42.1 bits (21), Expect = 2.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 327 gtgatgtatctaacccaaggcagagcctgatatccactttt 367 ||||||||||| ||||| || ||||| || ||||||||||| Sbjct: 1483 gtgatgtatctgacccacggaagagcttggtatccactttt 1443
>gb|AC091656.3| Rattus norvegicus strain Brown Norway clone RP31-236J24, complete sequence Length = 132420 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 675 ctccttgccttcaccataatc 695 ||||||||||||||||||||| Sbjct: 82960 ctccttgccttcaccataatc 82940
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 aaaatagggtatctcaaattt 430 ||||||||||||||||||||| Sbjct: 478105 aaaatagggtatctcaaattt 478085
>gb|AC121135.9| Mus musculus chromosome 18, clone RP23-328A22, complete sequence Length = 189515 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 609 gtggcatcatagggcacaggc 629 ||||||||||||||||||||| Sbjct: 74393 gtggcatcatagggcacaggc 74413
>emb|BX255916.7| Mouse DNA sequence from clone RP23-408N4 on chromosome 4, complete sequence Length = 119185 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 59 gacaagaattcaacaaggaactgta 83 |||||||| |||||||||||||||| Sbjct: 8803 gacaagaagtcaacaaggaactgta 8779
>gb|AC148007.3| Mus musculus BAC clone RP23-273G4 from 1, complete sequence Length = 184937 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 675 ctccttgccttcaccataatc 695 ||||||||||||||||||||| Sbjct: 104635 ctccttgccttcaccataatc 104655
>gb|U81834.1|HSU81834 Human cosmid LL12NC01-95H4, ETV6 gene, exon 2 and partial cds Length = 36558 Score = 42.1 bits (21), Expect = 2.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 508 tatattccttgccaccaggaaatga 532 ||||||||||||||| ||||||||| Sbjct: 11460 tatattccttgccacaaggaaatga 11436 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,334,228 Number of Sequences: 3902068 Number of extensions: 7334228 Number of successful extensions: 128899 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 128560 Number of HSP's gapped (non-prelim): 335 length of query: 733 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 710 effective length of database: 17,143,297,704 effective search space: 12171741369840 effective search space used: 12171741369840 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
