ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14j12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 55 3e-07
2APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 45 2e-04
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 35 0.21
4SDC3_MOUSE (Q64519) Syndecan-3 precursor (SYND3) 33 0.79
5WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7... 32 2.3
6TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily pro... 30 6.7

>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 24/80 (30%), Positives = 35/80 (43%)
 Frame = -3

Query: 615 MADLAASLPGMRYSVGSAYKLVEYYTAHPGAAGLKVVNSACCGGGRLNGREFCGTPNTTL 436
           +  L+ +LP   +     Y ++      P A G +     CC  G L+    C    + +
Sbjct: 438 LGQLSKTLPNSTFVYMDIYTIISQMLETPAAYGFEETKKPCCKTGLLSAGALCKKSTSKI 497

Query: 435 CVNRDEYLFWDGVHGTQATW 376
           C N   YLFWDGVH TQ  +
Sbjct: 498 CPNTSSYLFWDGVHPTQRAY 517



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>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 45.1 bits (105), Expect = 2e-04
 Identities = 22/80 (27%), Positives = 31/80 (38%)
 Frame = -3

Query: 615 MADLAASLPGMRYSVGSAYKLVEYYTAHPGAAGLKVVNSACCGGGRLNGREFCGTPNTTL 436
           +  L+ +LP      G  Y +       P   G + +   CC  G   G  FC       
Sbjct: 355 LGQLSKTLPNSTIVYGDIYSIFSKMLESPEDYGFEEIKKPCCKIGLTKGGVFCKERTLKN 414

Query: 435 CVNRDEYLFWDGVHGTQATW 376
             N   YLFWDG+H +Q  +
Sbjct: 415 MSNASSYLFWDGLHPSQRAY 434



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 35.0 bits (79), Expect = 0.21
 Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 16/95 (16%)
 Frame = -3

Query: 618 AMADLAASLPGMRYSVGSAYKLVEYYTAHPGAAGLKVVNSACCG-GGRLN---------- 472
           A+ +L +SL     +    Y L      H    G K    +CCG GG+ N          
Sbjct: 262 AVIELRSSLSEAAITYVDVYSLKHELFVHAQGHGFKGSLVSCCGHGGKYNYNKGIGCGMK 321

Query: 471 ----GRE-FCGTPNTTLCVNRDEYLFWDGVHGTQA 382
               G+E + G P    C   D+ + WDGVH TQA
Sbjct: 322 KIVKGKEVYIGKP----CDEPDKAVVWDGVHFTQA 352



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>SDC3_MOUSE (Q64519) Syndecan-3 precursor (SYND3)|
          Length = 442

 Score = 33.1 bits (74), Expect = 0.79
 Identities = 31/112 (27%), Positives = 50/112 (44%)
 Frame = +2

Query: 251 TLTSKLAADTARSSSRISCLKLTGAANPSSTGAP*ISSAPLFQVACVPCTPSQNRYSSRL 430
           T   ++  ++++ ++ IS    T AA  ++TGAP +++AP       P TP     ++ +
Sbjct: 144 TEVKEVVEESSQKATTISTTTSTTAA--TTTGAPTMATAPATAATTAPSTPEAPPATATV 201

Query: 431 THKVVLGVPQNSRPLSLPPPQHALFTTLSPAAPGCAV*YSTSL*ALPTEYLI 586
                 G+ Q   PL L     A  TT  PAAP      +T     PT  L+
Sbjct: 202 ADVRTTGI-QGMLPLPLTTAATAKITT--PAAPSPPTTVATLDTEAPTPRLV 250



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>WNK4_HUMAN (Q96J92) Serine/threonine-protein kinase WNK4 (EC 2.7.11.1) (Protein|
            kinase with no lysine 4) (Protein kinase,
            lysine-deficient 4)
          Length = 1243

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 25/84 (29%), Positives = 35/84 (41%)
 Frame = +2

Query: 278  TARSSSRISCLKLTGAANPSSTGAP*ISSAPLFQVACVPCTPSQNRYSSRLTHKVVLGVP 457
            TA S+S  S        NP S G P IS  P+F +   PC PS + +S        +   
Sbjct: 798  TAFSTSSSSPGTPLSPGNPFSPGTP-ISPGPIFPITSPPCHPSPSPFSP-------ISSQ 849

Query: 458  QNSRPLSLPPPQHALFTTLSPAAP 529
             +S P   P      F++ +P  P
Sbjct: 850  VSSNPSPHPTSSPLPFSSSTPEFP 873



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>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)|
          Length = 1544

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
 Frame = +2

Query: 386 CVPCTPSQNRYSSRLTHKVVLG------VPQNSRPLSLPPP 490
           C P T   NRYS+    +V+ G      + QN  PLSLPPP
Sbjct: 741 CHPVTQVSNRYSN--PGQVIFGSVEMGRIIQNPPPLSLPPP 779


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,782,993
Number of Sequences: 219361
Number of extensions: 1769839
Number of successful extensions: 5586
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5582
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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