>CMT1_CRYNE (Q6U1Z4) Alpha-1,3-mannosyltransferase CMT1 (EC 2.4.1.-)|
          Length = 466

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 23/84 (27%), Positives = 37/84 (44%)
 Frame = -2

Query: 618 LSNHITCLVSFLQDTLHEHLGIMLSVHTAFSDRASALLTVQTLMSDLASLQSRIEKLEAA 439
           L + +  L+  L+    EHL + +    +      A+  V   M D   L+S   ++E  
Sbjct: 142 LPDLLNTLIVLLRYLAPEHLAVSILEGPSSDCTQKAIEQVLKPMLDDQGLESAWTRIETG 201

Query: 438 SSKVFGGDRTRLRKVHELRETIRA 367
            SK+  G   R+ K+ ELR T  A
Sbjct: 202 ESKIDWGKHNRIEKIAELRNTALA 225

>SYSC_SCHPO (O14018) Seryl-tRNA synthetase, cytoplasmic (EC 6.1.1.11)|
           (Serine--tRNA ligase) (SerRS)
          Length = 450

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 20/53 (37%), Positives = 28/53 (52%)
 Frame = -2

Query: 486 SDLASLQSRIEKLEAASSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYE 328
           S+    QSR  ++     K+  GDR + + VH L  T+ ATE A CC L  Y+
Sbjct: 363 SNCTDYQSRNLEIRCGVKKM--GDREK-KYVHCLNSTLCATERALCCILENYQ 412

>CCD41_RAT (Q66H89) Coiled-coil domain-containing protein 41|
          Length = 692

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
 Frame = -2

Query: 582 QDTLHEHLGIMLSVH-TAFSDRASALLTVQT-LMSDLASLQSRIEKLEA----ASSKVFG 421
           ++ LH  L   LSV  T  S R   L+  +T L+  L SL++ + +L A    + ++V  
Sbjct: 182 KEELHNQL---LSVDPTRDSKRVEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVEN 238

Query: 420 GDRTRLRKVHELRETIRATEDAKCCALREYERIKE 316
             R ++R++ E++ T+R+ E  K  A  + ER+++
Sbjct: 239 VQRIQVRQLAEMQATLRSLEAEKQSAKLQAERLEK 273

>CCD41_MOUSE (Q9D5R3) Coiled-coil domain-containing protein 41|
          Length = 692

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
 Frame = -2

Query: 582 QDTLHEHLGIMLSVH-TAFSDRASALLTVQT-LMSDLASLQSRIEKLEA----ASSKVFG 421
           ++ LH  L   LSV  T  S R   L+  +T L+  L SL++ + +L A    + ++V  
Sbjct: 182 KEELHNQL---LSVDPTRDSKRMEQLVREKTHLLQKLKSLEAEVAELRAEKENSGAQVEN 238

Query: 420 GDRTRLRKVHELRETIRATEDAKCCALREYERIKE 316
             R ++R++ E++ T+R+ E  K  A  + ER+++
Sbjct: 239 VQRIQVRQLAEMQATLRSLEAEKQSAKLQAERLEK 273

>SYS_ARATH (Q39230) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)|
           (SerRS)
          Length = 451

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = -2

Query: 504 TVQTLMSDLASLQSRIEKLEAASSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYER 325
           T + L+S       +  +LE    +    ++T+ + VH L  T+ ATE   CC L  Y+R
Sbjct: 355 TFRELVSCSNCTDYQARRLEIRYGQKKSNEQTK-QYVHMLNSTLTATERTICCILENYQR 413

>YCF1_LOTJA (Q9BBN6) Hypothetical 214.8 kDa protein ycf1|
          Length = 1793

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -2

Query: 438 SSKVFGGDRTRLRKVHELRETIRATEDAKCCALREYERIKENNK 307
           SSK+F   +  +RK  EL+ +    E AK    +E E+IK+N K
Sbjct: 705 SSKIFFMFKNWIRKKKELKNSDYTDEKAKESQKKEEEKIKKNEK 748


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,286,898
Number of Sequences: 219361
Number of extensions: 1531410
Number of successful extensions: 3628
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3627
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)