>gb|BT009559.1| Triticum aestivum clone wre1n.pk0001.g4:fis, full insert mRNA
           sequence
          Length = 849

 Score =  184 bits (93), Expect = 1e-43
 Identities = 256/308 (83%), Gaps = 8/308 (2%)
 Strand = Plus / Minus

                                                                       
Query: 10  gtttattcatgctctaggcttgcaagtttcttgcgggcaaaggtggaccggcaaccgggc 69
           ||||||||||||||||| ||||||||||||||||||||||||| | || ||||| | |  
Sbjct: 755 gtttattcatgctctagacttgcaagtttcttgcgggcaaaggcgaacaggcaatcagag 696

                                                                       
Query: 70  tacttacatacagaccaaaataacattgaaacgacagatcggagactagcctgcngtaat 129
           | | || ||| ||||||||||||  | | ||||||| |||  | |||||||||| | |||
Sbjct: 695 ttcatatatagagaccaaaataatttgggaacgacacatcaaacactagcctgcagcaat 636

                                                                       
Query: 130 acaaa-gaaattt-gaaacaactgtggn---aaaagaaaactccgattgccacggacagg 184
           | ||| ||||||| ||||||| |||||    |||| | ||||||||  ||| || |||||
Sbjct: 635 aaaaaagaaattttgaaacaaatgtgggggaaaaaaagaactccgacagccgcgaacagg 576

                                                                       
Query: 185 ggagaaagtcttgctggctcg---acaatagcattnggtgccatcaggctaagtgatgcc 241
           ||||||| |||||||||||||   || |||||||  ||||||||||||||||||||||||
Sbjct: 575 ggagaaaatcttgctggctcgccgaccatagcatccggtgccatcaggctaagtgatgcc 516

                                                                       
Query: 242 gaaacagcgaggccatctcaatggcagttatagcggnttcngcacccttgtttccagcct 301
           ||||||| ||||||||||| || |||||||| ||||  || ||||| |||||||||||||
Sbjct: 515 gaaacagtgaggccatctcgatagcagttatggcggtctcagcacctttgtttccagcct 456

                   
Query: 302 tcccacca 309
           | ||||||
Sbjct: 455 tgccacca 448

>ref|XM_473040.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 666

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                       
Query: 225 tcaggctaagtgatgccgaaacagcgaggccatctcaatggcagttatagcggnttcngc 284
           |||||| | ||||||| | ||||||||||||||||| || ||||||| ||||| ||| ||
Sbjct: 666 tcaggccaggtgatgctggaacagcgaggccatctcgattgcagttagagcggcttcagc 607

                                              
Query: 285 acccttgtttccagccttcccaccancncgattta 319
            ||||||||||||||||| |||||| | |||||||
Sbjct: 606 tcccttgtttccagccttaccaccagcacgattta 572

>dbj|AK103493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130O17, full
           insert sequence
          Length = 1036

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                       
Query: 225 tcaggctaagtgatgccgaaacagcgaggccatctcaatggcagttatagcggnttcngc 284
           |||||| | ||||||| | ||||||||||||||||| || ||||||| ||||| ||| ||
Sbjct: 779 tcaggccaggtgatgctggaacagcgaggccatctcgattgcagttagagcggcttcagc 720

                                              
Query: 285 acccttgtttccagccttcccaccancncgattta 319
            ||||||||||||||||| |||||| | |||||||
Sbjct: 719 tcccttgtttccagccttaccaccagcacgattta 685

>dbj|AK070530.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023061H21, full
           insert sequence
          Length = 1046

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 82/95 (86%)
 Strand = Plus / Minus

                                                                       
Query: 225 tcaggctaagtgatgccgaaacagcgaggccatctcaatggcagttatagcggnttcngc 284
           |||||| | ||||||| | ||||||||||||||||| || ||||||| ||||| ||| ||
Sbjct: 739 tcaggccaggtgatgctggaacagcgaggccatctcgattgcagttagagcggcttcagc 680

                                              
Query: 285 acccttgtttccagccttcccaccancncgattta 319
            ||||||||||||||||| |||||| | |||||||
Sbjct: 679 tcccttgtttccagccttaccaccagcacgattta 645

>gb|AY104006.1| Zea mays PCO112396 mRNA sequence
          Length = 936

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                       
Query: 225 tcaggctaagtgatgccgaaacagcgaggccatctcaatggcagttatagcggnttcngc 284
           |||| ||||||||||||| |||||||||||||||||||||||||| | ||| | ||| ||
Sbjct: 658 tcagcctaagtgatgccggaacagcgaggccatctcaatggcagtaagagcagcttcagc 599

                                    
Query: 285 acccttgtttccagccttcccacca 309
            || |||||||||||||| ||||||
Sbjct: 598 tcctttgtttccagccttgccacca 574

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                       
Query: 265      gcagttatagcggnttcngcacccttgtttccagccttcccaccancncgattta 319
                ||||||| ||||| ||| || ||||||||||||||||| |||||| | |||||||
Sbjct: 24853803 gcagttagagcggcttcagctcccttgtttccagccttaccaccagcacgattta 24853857



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                    
Query: 225      tcaggctaagtgatgccgaaacagcgaggccatctc 260
                |||||| | ||||||| | |||||||||||||||||
Sbjct: 24853689 tcaggccaggtgatgctggaacagcgaggccatctc 24853724

>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08,
              complete sequence
          Length = 170765

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                     
Query: 265    gcagttatagcggnttcngcacccttgtttccagccttcccaccancncgattta 319
              ||||||| ||||| ||| || ||||||||||||||||| |||||| | |||||||
Sbjct: 115519 gcagttagagcggcttcagctcccttgtttccagccttaccaccagcacgattta 115573



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 225    tcaggctaagtgatgccgaaacagcgaggccatctc 260
              |||||| | ||||||| | |||||||||||||||||
Sbjct: 115405 tcaggccaggtgatgctggaacagcgaggccatctc 115440

>ref|XM_646830.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (141.t00019)
           partial mRNA
          Length = 945

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 127 aatacaaagaaatttgaaaca 147
           |||||||||||||||||||||
Sbjct: 811 aatacaaagaaatttgaaaca 831

>emb|AL162613.22| Human DNA sequence from clone RP11-182C2 on chromosome 10 Contains the
             5' end of the ADD3 gene for adducin 3 (gamma) and a CpG
             island, complete sequence
          Length = 79949

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    ctctaggcttgcaagtttctt 41
             |||||||||||||||||||||
Sbjct: 34796 ctctaggcttgcaagtttctt 34816

>gb|AY641642.1| Fagonia subinermis internal transcribed spacer 1, 5.8 ribosomal RNA
           gene, and internal transcribed spacer 2, complete
           sequence; and 28S ribosomal RNA gene, partial sequence
          Length = 704

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 17  catgctctaggcttgcaagtttct 40
           ||||||||||| ||||||||||||
Sbjct: 630 catgctctagggttgcaagtttct 607

>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence
          Length = 228842

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 77     atacagaccaaaataacatt 96
              ||||||||||||||||||||
Sbjct: 129726 atacagaccaaaataacatt 129745

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     aaacagcgaggccatctcaa 262
               ||||||||||||||||||||
Sbjct: 3328254 aaacagcgaggccatctcaa 3328235

>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 189286

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     acatacagaccaaaataacattga 98
              |||||||||||||||||| |||||
Sbjct: 157453 acatacagaccaaaataaaattga 157430

>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region,
             complete sequence
          Length = 153869

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    atacagaccaaaataacatt 96
             ||||||||||||||||||||
Sbjct: 98132 atacagaccaaaataacatt 98113

>emb|CT573073.1| Kuenenia stuttgartiensis genome fragment KUST_C (3 of 5)
          Length = 893329

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 283    gcacccttgtttccagccttccca 306
              |||||||||||||| |||||||||
Sbjct: 457127 gcacccttgtttcctgccttccca 457150

>gb|U50142.1|SCU50142 Saccharomyces cerevisiae vacuolar protein sorting (VPS9) gene,
            complete cds
          Length = 1904

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  caaagaaatttgaaacaact 150
            ||||||||||||||||||||
Sbjct: 1359 caaagaaatttgaaacaact 1378

>gb|U20373.1|SCVPS9 Saccharomyces cerevisiae Vps9p (VPS9) gene, complete cds
          Length = 1721

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  caaagaaatttgaaacaact 150
            ||||||||||||||||||||
Sbjct: 1081 caaagaaatttgaaacaact 1100

>emb|Y08231.1|MMY08231 Mus musculus MOG gene, promoter sequence
          Length = 3806

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   atacagaccaaaataacatt 96
            ||||||||||||||||||||
Sbjct: 2320 atacagaccaaaataacatt 2339


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,127,113
Number of Sequences: 3902068
Number of extensions: 2127113
Number of successful extensions: 37559
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37508
Number of HSP's gapped (non-prelim): 50
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)