ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14i19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017824.1| Zea mays clone EL01N0508C05.c mRNA sequence 121 3e-24
2ref|NM_188724.1| Oryza sativa (japonica cultivar-group), predic... 94 7e-16
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
4dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
5dbj|AK098860.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 7e-16
6dbj|AK067756.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 7e-16
7gb|AC161465.3| Gallus gallus BAC clone CH261-97D4 from chromosom... 44 0.57
8gb|AC116839.8| Mus musculus chromosome 8, clone RP24-390L13, com... 42 2.2
9emb|CR954250.6| Zebrafish DNA sequence from clone DKEY-34G4 in l... 42 2.2
10gb|AC098888.4| Mus musculus BAC clone RP23-122N8 from 8, complet... 42 2.2
11gb|AC007417.5| Drosophila melanogaster, chromosome 2R, region 47... 42 2.2
12gb|AC012177.6| Homo sapiens chromosome 16 clone RP11-231O22, com... 42 2.2
13gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, com... 42 2.2
14gb|AE003830.3| Drosophila melanogaster chromosome 2R, section 20... 42 2.2
15gb|AC157793.6| Mus musculus chromosome 1, clone RP24-175H22, com... 42 2.2
16gb|AC121256.22| Mus musculus chromosome 1, clone RP24-576N23, co... 42 2.2
17ref|XM_516972.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 8.9
18ref|NM_186223.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.9
19gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence 40 8.9
20gb|AC105378.10| Trypanosoma brucei chromosome 7 clone RPCI93-27E... 40 8.9
21gb|AF289083.3| Bufo marinus tachykinin NK-1 receptor A isoform m... 40 8.9
22gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, co... 40 8.9
23gb|AC139750.3| Mus musculus BAC clone RP24-444K8 from chromosome... 40 8.9
24gb|AC112274.4| Mus musculus BAC clone RP24-125F23 from chromosom... 40 8.9
25gb|AC155929.6| Mus musculus BAC clone RP24-75H6 from chromosome ... 40 8.9
26gb|AC162303.4| Mus musculus chromosome 15, clone RP23-475N20, co... 40 8.9
27emb|AL591504.5| Human DNA sequence from clone RP11-445J9 on chro... 40 8.9
28emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on ch... 40 8.9
29gb|BC021177.2| Homo sapiens hypothetical protein MGC33212, mRNA ... 40 8.9
30emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB 40 8.9
31emb|CR753840.11| Zebrafish DNA sequence from clone DKEY-208H10 i... 40 8.9
32emb|AL929409.5| Mouse DNA sequence from clone RP23-402H11 on chr... 40 8.9
33gb|AC154755.2| Mus musculus BAC clone RP24-406B22 from chromosom... 40 8.9
34gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 40 8.9
35ref|NM_152773.2| Homo sapiens hypothetical protein MGC33212 (MGC... 40 8.9
36ref|XM_936393.1| PREDICTED: Homo sapiens similar to transmembran... 40 8.9
37gb|AC068633.13| Homo sapiens 3 BAC RP11-155B15 (Roswell Park Can... 40 8.9
38gb|AC159195.2| Mus musculus BAC clone RP23-467E1 from chromosome... 40 8.9
39dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
40dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
41gb|AC069257.28| Homo sapiens 3 BAC RP11-447L10 (Roswell Park Can... 40 8.9
42emb|BX890605.4| Mouse DNA sequence from clone RP23-29K12 on chro... 40 8.9
43gb|AC073485.3| Homo sapiens BAC clone RP11-798J16 from 2, comple... 40 8.9
44gb|AC066692.3| Homo sapiens BAC clone RP11-424C23 from 2, comple... 40 8.9
45gb|BC015348.1| Homo sapiens transmembrane 4 L six family member ... 40 8.9
46gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, comple... 40 8.9
47dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
48dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
49emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chro... 40 8.9
50dbj|BS000042.1| Pan troglodytes chromosome 22 clone:RP43-149B05,... 40 8.9
51dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
52dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
53emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, ... 40 8.9
54emb|AL928890.6| Mouse DNA sequence from clone RP24-314D20 on chr... 40 8.9
55emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chro... 40 8.9
56emb|AL163217.2|HS21C017 Homo sapiens chromosome 21 segment HS21C017 40 8.9
57emb|AL078474.2|HSH2137 Homo sapiens chromosome 21 PAC RPCIP704H2... 40 8.9
58emb|AL136338.4|CNS01DW5 Human chromosome 14 DNA sequence BAC C-2... 40 8.9
59emb|AL732315.7| Mouse DNA sequence from clone RP23-124N11 on chr... 40 8.9 
>gb|BT017824.1| Zea mays clone EL01N0508C05.c mRNA sequence
          Length = 1225

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 562 atctttatcgatgtccgcttctcgccgagctccttcaggttgggacgtggggttcgaggg 621
           ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct: 586 atctttatcgacgtccgcttctcgcctagctccttcaggttgggacgtggagtttgaggg 527

                                        
Query: 622 agctttgggtcaagctctgttgcgctctg 650
           |||||||| |||||||||||  |||||||
Sbjct: 526 agctttggatcaagctctgtcacgctctg 498



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 66/78 (84%)
 Strand = Plus / Minus

                                                                       
Query: 436 atcttcctgttcagtgtgcttgtcagtgatctgcctggctcccctgcgttcttctccacc 495
           ||||||||| ||| ||||||||||||||| ||||| || || ||||| || ||||| | |
Sbjct: 721 atcttcctgctcaatgtgcttgtcagtgacctgcccggttcacctgcatttttctctatc 662

                             
Query: 496 accttcgctatatcttct 513
           |||||||| | |||||||
Sbjct: 661 accttcgccacatcttct 644
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>ref|NM_188724.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2559

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 425  tcttcatggagatcttcctgttcagtgtgcttgtcagtgatctgcctggctcccctgcgt 484
            ||||| |||| ||||| ||  ||||| |||||||||||||||| |||||||| |||||||
Sbjct: 2371 tcttcctggaaatctttctactcagtatgcttgtcagtgatctacctggctcacctgcgt 2312

                                               
Query: 485  tcttctccaccaccttcgctatatcttctgtcaag 519
            | ||||||| |||||| |||| |||||||||||||
Sbjct: 2311 ttttctccatcaccttggctacatcttctgtcaag 2277



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                        
Query: 562  atctttatcgatgtccgcttctcgccgagctccttcaggttgggacgtggggttcgaggg 621
            ||||||||||||||||| || || |||  |||||| ||||| |||||||| ||| | |||
Sbjct: 2225 atctttatcgatgtccgtttttcaccggcctccttaaggtttggacgtggagtttgtggg 2166

                                         
Query: 622  agctttgggtcaagctctgttgcgctctg 650
            | ||| || |||||||||||||| |||||
Sbjct: 2165 atcttcggatcaagctctgttgcactctg 2137
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                           
Query: 425     tcttcatggagatcttcctgttcagtgtgcttgtcagtgatctgcctggctcccctgcgt 484
               ||||| |||| ||||| ||  ||||| |||||||||||||||| |||||||| |||||||
Sbjct: 7861498 tcttcctggaaatctttctactcagtatgcttgtcagtgatctacctggctcacctgcgt 7861557

                                                  
Query: 485     tcttctccaccaccttcgctatatcttctgtcaag 519
               | ||||||| |||||| |||| |||||||||||||
Sbjct: 7861558 ttttctccatcaccttggctacatcttctgtcaag 7861592



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                           
Query: 562     atctttatcgatgtccgcttctcgccgagctccttcaggttgggacgtggggttcgaggg 621
               ||||||||||||||||| || || |||  |||||| ||||| |||||||| ||| | |||
Sbjct: 7861644 atctttatcgatgtccgtttttcaccggcctccttaaggtttggacgtggagtttgtggg 7861703

                                            
Query: 622     agctttgggtcaagctctgttgcgctctg 650
               | ||| || |||||||||||||| |||||
Sbjct: 7861704 atcttcggatcaagctctgttgcactctg 7861732
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>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1066G12
          Length = 136263

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Plus

                                                                         
Query: 425   tcttcatggagatcttcctgttcagtgtgcttgtcagtgatctgcctggctcccctgcgt 484
             ||||| |||| ||||| ||  ||||| |||||||||||||||| |||||||| |||||||
Sbjct: 56444 tcttcctggaaatctttctactcagtatgcttgtcagtgatctacctggctcacctgcgt 56503

                                                
Query: 485   tcttctccaccaccttcgctatatcttctgtcaag 519
             | ||||||| |||||| |||| |||||||||||||
Sbjct: 56504 ttttctccatcaccttggctacatcttctgtcaag 56538



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Plus

                                                                         
Query: 562   atctttatcgatgtccgcttctcgccgagctccttcaggttgggacgtggggttcgaggg 621
             ||||||||||||||||| || || |||  |||||| ||||| |||||||| ||| | |||
Sbjct: 56590 atctttatcgatgtccgtttttcaccggcctccttaaggtttggacgtggagtttgtggg 56649

                                          
Query: 622   agctttgggtcaagctctgttgcgctctg 650
             | ||| || |||||||||||||| |||||
Sbjct: 56650 atcttcggatcaagctctgttgcactctg 56678
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>dbj|AK098860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N23, full
            insert sequence
          Length = 2372

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 425  tcttcatggagatcttcctgttcagtgtgcttgtcagtgatctgcctggctcccctgcgt 484
            ||||| |||| ||||| ||  ||||| |||||||||||||||| |||||||| |||||||
Sbjct: 1961 tcttcctggaaatctttctactcagtatgcttgtcagtgatctacctggctcacctgcgt 1902

                                               
Query: 485  tcttctccaccaccttcgctatatcttctgtcaag 519
            | ||||||| |||||| |||| |||||||||||||
Sbjct: 1901 ttttctccatcaccttggctacatcttctgtcaag 1867



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                        
Query: 562  atctttatcgatgtccgcttctcgccgagctccttcaggttgggacgtggggttcgaggg 621
            ||||||||||||||||| || || |||  |||||| ||||| |||||||| ||| | |||
Sbjct: 1815 atctttatcgatgtccgtttttcaccggcctccttaaggtttggacgtggagtttgtggg 1756

                                         
Query: 622  agctttgggtcaagctctgttgcgctctg 650
            | ||| || |||||||||||||| |||||
Sbjct: 1755 atcttcggatcaagctctgttgcactctg 1727
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>dbj|AK067756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116N03, full
            insert sequence
          Length = 2460

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                        
Query: 425  tcttcatggagatcttcctgttcagtgtgcttgtcagtgatctgcctggctcccctgcgt 484
            ||||| |||| ||||| ||  ||||| |||||||||||||||| |||||||| |||||||
Sbjct: 2025 tcttcctggaaatctttctactcagtatgcttgtcagtgatctacctggctcacctgcgt 1966

                                               
Query: 485  tcttctccaccaccttcgctatatcttctgtcaag 519
            | ||||||| |||||| |||| |||||||||||||
Sbjct: 1965 ttttctccatcaccttggctacatcttctgtcaag 1931



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 75/89 (84%)
 Strand = Plus / Minus

                                                                        
Query: 562  atctttatcgatgtccgcttctcgccgagctccttcaggttgggacgtggggttcgaggg 621
            ||||||||||||||||| || || |||  |||||| ||||| |||||||| ||| | |||
Sbjct: 1879 atctttatcgatgtccgtttttcaccggcctccttaaggtttggacgtggagtttgtggg 1820

                                         
Query: 622  agctttgggtcaagctctgttgcgctctg 650
            | ||| || |||||||||||||| |||||
Sbjct: 1819 atcttcggatcaagctctgttgcactctg 1791
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>gb|AC161465.3| Gallus gallus BAC clone CH261-97D4 from chromosome ul, complete
             sequence
          Length = 213337

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 156   cacctctaaattctttattttc 177
             ||||||||||||||||||||||
Sbjct: 92554 cacctctaaattctttattttc 92533
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>gb|AC116839.8| Mus musculus chromosome 8, clone RP24-390L13, complete sequence
          Length = 142874

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 181   catatgaacaacaagcacagagaaa 205
             |||||||||||||| ||||||||||
Sbjct: 26114 catatgaacaacaaacacagagaaa 26138
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>emb|CR954250.6| Zebrafish DNA sequence from clone DKEY-34G4 in linkage group 8,
            complete sequence
          Length = 85279

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 443  tgttcagtgtgcttgtcagtgatct 467
            |||||||||| ||||||||||||||
Sbjct: 2943 tgttcagtgttcttgtcagtgatct 2967
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>gb|AC098888.4| Mus musculus BAC clone RP23-122N8 from 8, complete sequence
          Length = 229247

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 181    catatgaacaacaagcacagagaaa 205
              |||||||||||||| ||||||||||
Sbjct: 228696 catatgaacaacaaacacagagaaa 228720
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>gb|AC007417.5| Drosophila melanogaster, chromosome 2R, region 47A-47B, BAC clone
             BACR48F07, complete sequence
          Length = 175681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 157   acctctaaattctttattttc 177
             |||||||||||||||||||||
Sbjct: 78794 acctctaaattctttattttc 78814
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>gb|AC012177.6| Homo sapiens chromosome 16 clone RP11-231O22, complete sequence
          Length = 186687

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 47    tttacacctgttttgttttgt 67
             |||||||||||||||||||||
Sbjct: 59901 tttacacctgttttgttttgt 59881
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>gb|AC154140.7| Mus musculus chromosome 1, clone RP23-184B11, complete sequence
          Length = 233171

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 431    tggagatcttcctgttcagtg 451
              |||||||||||||||||||||
Sbjct: 150595 tggagatcttcctgttcagtg 150615
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>gb|AE003830.3| Drosophila melanogaster chromosome 2R, section 20 of 73 of the complete
              sequence
          Length = 240481

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    acctctaaattctttattttc 177
              |||||||||||||||||||||
Sbjct: 154950 acctctaaattctttattttc 154970
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>gb|AC157793.6| Mus musculus chromosome 1, clone RP24-175H22, complete sequence
          Length = 130354

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 431    tggagatcttcctgttcagtg 451
              |||||||||||||||||||||
Sbjct: 129001 tggagatcttcctgttcagtg 128981
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>gb|AC121256.22| Mus musculus chromosome 1, clone RP24-576N23, complete sequence
          Length = 182551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 431    tggagatcttcctgttcagtg 451
              |||||||||||||||||||||
Sbjct: 120530 tggagatcttcctgttcagtg 120510
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>ref|XM_516972.1| PREDICTED: Pan troglodytes similar to hypothetical protein MGC33212
           (LOC460959), mRNA
          Length = 615

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 472 ggctcccctgcgttcttctc 491
           ||||||||||||||||||||
Sbjct: 142 ggctcccctgcgttcttctc 123
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>ref|NM_186223.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1944

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 447  cagtgtgcttgtcagtgatc 466
            ||||||||||||||||||||
Sbjct: 1668 cagtgtgcttgtcagtgatc 1649
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>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 46      ctttacacctgttttgtttt 65
               ||||||||||||||||||||
Sbjct: 1421375 ctttacacctgttttgtttt 1421356
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>gb|AC105378.10| Trypanosoma brucei chromosome 7 clone RPCI93-27E10, complete sequence
          Length = 138995

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     ctttacacctgttttgtttt 65
              ||||||||||||||||||||
Sbjct: 123560 ctttacacctgttttgtttt 123541
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>gb|AF289083.3| Bufo marinus tachykinin NK-1 receptor A isoform mRNA, complete cds
          Length = 1853

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   acatctttacacctgttttg 61
            ||||||||||||||||||||
Sbjct: 1496 acatctttacacctgttttg 1477
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>gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, complete sequence
          Length = 179157

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 287  cctgcacactgccatcttcc 306
            ||||||||||||||||||||
Sbjct: 3416 cctgcacactgccatcttcc 3435
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>gb|AC139750.3| Mus musculus BAC clone RP24-444K8 from chromosome 17, complete sequence
          Length = 160413

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    gacatcctgcacactgccat 301
              ||||||||||||||||||||
Sbjct: 140001 gacatcctgcacactgccat 140020
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>gb|AC112274.4| Mus musculus BAC clone RP24-125F23 from chromosome 10, complete
             sequence
          Length = 144435

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   cctctaaattctttattttc 177
             ||||||||||||||||||||
Sbjct: 72981 cctctaaattctttattttc 73000
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>gb|AC155929.6| Mus musculus BAC clone RP24-75H6 from chromosome 10, complete sequence
          Length = 191193

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 158    cctctaaattctttattttc 177
              ||||||||||||||||||||
Sbjct: 163596 cctctaaattctttattttc 163577
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>gb|AC162303.4| Mus musculus chromosome 15, clone RP23-475N20, complete sequence
          Length = 181487

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   cctgcacactgccatcttcc 306
             ||||||||||||||||||||
Sbjct: 99761 cctgcacactgccatcttcc 99780
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>emb|AL591504.5| Human DNA sequence from clone RP11-445J9 on chromosome 1 Contains a novel
              gene, complete sequence
          Length = 150599

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 156    cacctctaaattctttattt 175
              ||||||||||||||||||||
Sbjct: 115246 cacctctaaattctttattt 115265
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>emb|AL451140.15| Human DNA sequence from clone RP11-540H22 on chromosome 9 Contains the 5'
              end of a novel gene and the 3' end of a novel gene,
              complete sequence
          Length = 187738

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    tcttcctgttcagtgtgctt 456
              ||||||||||||||||||||
Sbjct: 127355 tcttcctgttcagtgtgctt 127336
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>gb|BC021177.2| Homo sapiens hypothetical protein MGC33212, mRNA (cDNA clone
           MGC:33212 IMAGE:4830500), complete cds
          Length = 672

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 472 ggctcccctgcgttcttctc 491
           ||||||||||||||||||||
Sbjct: 196 ggctcccctgcgttcttctc 177
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>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB
          Length = 1683333

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 424     ctcttcatggagatcttcctgttc 447
               |||||||||| |||||||||||||
Sbjct: 1431241 ctcttcatggcgatcttcctgttc 1431218
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>emb|CR753840.11| Zebrafish DNA sequence from clone DKEY-208H10 in linkage group 5,
             complete sequence
          Length = 121731

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   cctctaaattctttattttc 177
             ||||||||||||||||||||
Sbjct: 83091 cctctaaattctttattttc 83110
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>emb|AL929409.5| Mouse DNA sequence from clone RP23-402H11 on chromosome 4 Contains the
             3' end of the Cdk5rap2 gene for CDK5 regulatory subunit
             associated protein 2 and the gene for a novel protein
             identical to tyrosine 3-monooxygenase/tryptophan
             5-monooxygenase activation protein theta Ywhaq, complete
             sequence
          Length = 147628

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 470   ctggctcccctgcgttcttctcca 493
             ||||||||||| ||||||||||||
Sbjct: 12984 ctggctcccctacgttcttctcca 12961
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>gb|AC154755.2| Mus musculus BAC clone RP24-406B22 from chromosome 13, complete
            sequence
          Length = 180363

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   tgttttgttttgtccaagaa 74
            ||||||||||||||||||||
Sbjct: 6730 tgttttgttttgtccaagaa 6711
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>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete sequence
          Length = 211315

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tgttttgttttgtccaagaa 74
              ||||||||||||||||||||
Sbjct: 104991 tgttttgttttgtccaagaa 104972
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>ref|NM_152773.2| Homo sapiens hypothetical protein MGC33212 (MGC33212), mRNA
          Length = 672

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 472 ggctcccctgcgttcttctc 491
           ||||||||||||||||||||
Sbjct: 196 ggctcccctgcgttcttctc 177
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>ref|XM_936393.1| PREDICTED: Homo sapiens similar to transmembrane 4 L six family
           member 19 (LOC642245), mRNA
          Length = 503

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 472 ggctcccctgcgttcttctc 491
           ||||||||||||||||||||
Sbjct: 169 ggctcccctgcgttcttctc 150
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>gb|AC068633.13| Homo sapiens 3 BAC RP11-155B15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 161735

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 623    gctttgggtcaagctctgtt 642
              ||||||||||||||||||||
Sbjct: 134266 gctttgggtcaagctctgtt 134285
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>gb|AC159195.2| Mus musculus BAC clone RP23-467E1 from chromosome 13, complete
            sequence
          Length = 194915

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   tgttttgttttgtccaagaa 74
            ||||||||||||||||||||
Sbjct: 6993 tgttttgttttgtccaagaa 7012
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 86      aacatgctcactcacctagc 105
               ||||||||||||||||||||
Sbjct: 5157452 aacatgctcactcacctagc 5157433
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 447     cagtgtgcttgtcagtgatc 466
               ||||||||||||||||||||
Sbjct: 1679441 cagtgtgcttgtcagtgatc 1679460
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>gb|AC069257.28| Homo sapiens 3 BAC RP11-447L10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 188969

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   ggctcccctgcgttcttctc 491
             ||||||||||||||||||||
Sbjct: 61853 ggctcccctgcgttcttctc 61834
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>emb|BX890605.4| Mouse DNA sequence from clone RP23-29K12 on chromosome 2, complete
             sequence
          Length = 148620

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   atcttgcatctactctcatc 243
             ||||||||||||||||||||
Sbjct: 90728 atcttgcatctactctcatc 90747
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>gb|AC073485.3| Homo sapiens BAC clone RP11-798J16 from 2, complete sequence
          Length = 140811

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 185   tgaacaacaagcacagagaaagtc 208
             ||||||| ||||||||||||||||
Sbjct: 76595 tgaacaataagcacagagaaagtc 76572
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>gb|AC066692.3| Homo sapiens BAC clone RP11-424C23 from 2, complete sequence
          Length = 175028

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    tttcacccatatgaacaaca 193
              ||||||||||||||||||||
Sbjct: 128303 tttcacccatatgaacaaca 128322
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>gb|BC015348.1| Homo sapiens transmembrane 4 L six family member 19, mRNA (cDNA
           clone IMAGE:4415302), containing frame-shift errors
          Length = 330

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 472 ggctcccctgcgttcttctc 491
           ||||||||||||||||||||
Sbjct: 152 ggctcccctgcgttcttctc 133
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>gb|AC010090.7| Homo sapiens BAC clone RP11-294G19 from 2, complete sequence
          Length = 115597

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tacacctgttttgttttgtc 68
             ||||||||||||||||||||
Sbjct: 14912 tacacctgttttgttttgtc 14931
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>dbj|AP004014.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1606_D04
          Length = 92729

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   cagtgtgcttgtcagtgatc 466
             ||||||||||||||||||||
Sbjct: 21641 cagtgtgcttgtcagtgatc 21660
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>dbj|AP006172.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0088O14
          Length = 179483

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    cagtgtgcttgtcagtgatc 466
              ||||||||||||||||||||
Sbjct: 148096 cagtgtgcttgtcagtgatc 148115
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>emb|BX294441.9| Mouse DNA sequence from clone RP23-421H1 on chromosome 2, complete
             sequence
          Length = 96360

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 55    tgttttgttttgtccaagaatcccatct 82
             ||||||||||||| ||| ||||||||||
Sbjct: 71398 tgttttgttttgttcaaaaatcccatct 71371
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>dbj|BS000042.1| Pan troglodytes chromosome 22 clone:RP43-149B05, map 22, complete
             sequences
          Length = 163377

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    acatctttacacctgttttgtttt 65
             ||||||| ||||||||||||||||
Sbjct: 78061 acatcttcacacctgttttgtttt 78038
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>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1099H05
          Length = 186036

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    aacatgctcactcacctagc 105
             ||||||||||||||||||||
Sbjct: 25808 aacatgctcactcacctagc 25789
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>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0020B10
          Length = 136175

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     aacatgctcactcacctagc 105
              ||||||||||||||||||||
Sbjct: 107216 aacatgctcactcacctagc 107197
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>emb|AL935115.6| Zebrafish DNA sequence from clone CH211-199D18, complete sequence
          Length = 187326

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   cctctaaattctttattttc 177
             ||||||||||||||||||||
Sbjct: 42411 cctctaaattctttattttc 42430
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>emb|AL928890.6| Mouse DNA sequence from clone RP24-314D20 on chromosome 2, complete
             sequence
          Length = 132135

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tctaaattctttattttcac 179
             ||||||||||||||||||||
Sbjct: 91759 tctaaattctttattttcac 91740
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>emb|AL935127.9| Mouse DNA sequence from clone RP23-431O5 on chromosome 2, complete
             sequence
          Length = 98852

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    tacacctgttttgttttgtc 68
             ||||||||||||||||||||
Sbjct: 83775 tacacctgttttgttttgtc 83794
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>emb|AL163217.2|HS21C017 Homo sapiens chromosome 21 segment HS21C017
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 42     acatctttacacctgttttgtttt 65
              ||||||| ||||||||||||||||
Sbjct: 251007 acatcttcacacctgttttgtttt 250984
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>emb|AL078474.2|HSH2137 Homo sapiens chromosome 21 PAC RPCIP704H2137, complete sequence
          Length = 131184

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    acatctttacacctgttttgtttt 65
             ||||||| ||||||||||||||||
Sbjct: 37274 acatcttcacacctgttttgtttt 37297
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>emb|AL136338.4|CNS01DW5 Human chromosome 14 DNA sequence BAC C-2022M23 of library CalTech-D
             from chromosome 14 of Homo sapiens (Human), complete
             sequence
          Length = 143177

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   gagaaagtcttttaccaatt 219
             ||||||||||||||||||||
Sbjct: 80546 gagaaagtcttttaccaatt 80527
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>emb|AL732315.7| Mouse DNA sequence from clone RP23-124N11 on chromosome 11, complete
             sequence
          Length = 35737

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    ttacacctgttttgttttgt 67
             ||||||||||||||||||||
Sbjct: 17965 ttacacctgttttgttttgt 17946


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,375,394
Number of Sequences: 3902068
Number of extensions: 6375394
Number of successful extensions: 117117
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116908
Number of HSP's gapped (non-prelim): 209
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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