ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14i12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074I17, full insert sequence Length = 1923 Score = 513 bits (259), Expect = e-142 Identities = 573/675 (84%), Gaps = 2/675 (0%) Strand = Plus / Minus Query: 27 tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 86 |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| |||||| Sbjct: 1853 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 1794 Query: 87 tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctggaacagacaat 146 |||||| || | || | ||||||||| |||| | ||||||||||||||| | |||||| Sbjct: 1793 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctggagctgacaat 1734 Query: 147 tgatccaacacctcaagcaacgtactcgtgctcaaacaggtatgacacggtctccgccca 206 || ||||| ||||| || || ||||| |||||||| ||||||||||| |||| || ||| Sbjct: 1733 tgctccaaaacctccaggaaggtactagtgctcaagcaggtatgacagtgtcttcggcca 1674 Query: 207 ttcacctgatattgcagctccaaagcattctccacggtcaattgctcaagtttaatgcaa 266 |||||||| |||||||||||||| |||| |||||| |||| || ||||| | ||| | | Sbjct: 1673 ttcacctggtattgcagctccaaggcatgctccaccgtcacctgttcaagctcaatacga 1614 Query: 267 gtgtaaacatcattcttcgccagagccatgatatcactgagtgagtagacatcaagaagg 326 ||||| ||||||||||| | |||||||||||||||||||| |||||||||||||| || Sbjct: 1613 gtgtagacatcattcttgcctagagccatgatatcactgagcgagtagacatcaaggaga 1554 Query: 327 gatccattatcatcaactataggaattgagcttattctatcttccagaagaaaatccagg 386 | |||||||| |||||||||||||||||||||| ||||||||| || || ||||||||| Sbjct: 1553 gcgccattatcgtcaactataggaattgagcttactctatcttcaagcagcaaatccagg 1494 Query: 387 caagtaattagaggagcactcagtcgcgatgttctaagctgtctagtactggcccttcca 446 || | | ||||||||| || ||||||| ||||||||||||||| | || ||| | ||| Sbjct: 1493 catgaatttagaggagtgcttggtcgcgaagttctaagctgtctattgcttgccttgcca 1434 Query: 447 gtatgctgcgaccatgtaccaataggaatactggaaatctgatttcgca-aaatgggata 505 ||||| | ||||||||||||||||| |||||| |||||| ||| ||| ||||| | || Sbjct: 1433 gtatgtggtgaccatgtaccaataggcatactgacaatctggttttgcagaaatgag-ta 1375 Query: 506 accttctggttgttcttggagctttgagcaaagaaatttcaaaatccctggaagagttgc 565 ||||| || |||||||| ||||||||||||| |||||||| |||||||||||| ||||| Sbjct: 1374 cccttcaggctgttcttgcagctttgagcaaataaatttcacaatccctggaagggttgc 1315 Query: 566 aagattaagtaacggtatccctgatatatctgtcgaggacttaaagatagggactgaaga 625 |||| ||| || || ||||||||| ||| || |||| |||||||||||| |||||||| Sbjct: 1314 aagaccaagcaaaggcatccctgatgaatccgttgagggcttaaagataggaactgaaga 1255 Query: 626 tatttcattttgtattatagtcagtgccacatcccttaaattatctgaatccttaacatg 685 |||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| Sbjct: 1254 tatttcatttctaattatagccaatgccacatcccttaaattatctgaatccttaacatg 1195 Query: 686 aaccaatggccttct 700 || ||||||||||| Sbjct: 1194 aattaatggccttct 1180
>ref|XM_472364.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 486 bits (245), Expect = e-134 Identities = 559/661 (84%), Gaps = 2/661 (0%) Strand = Plus / Minus Query: 41 ttatccaaggagaaatgttattgcgtctctcaatgagataattccttgcacagatttagt 100 |||||||| ||||||||| | |||||| ||||||||||| |||||||||||| || | | Sbjct: 1356 ttatccaatgagaaatgtaaatgcgtccctcaatgagattattccttgcacaaatctgct 1297 Query: 101 catcggttcaatagcgacaagccgccgcacccctggaacagacaattgatccaacacctc 160 | | ||||||||| |||| | ||||||||||||||| | |||||||| ||||| ||||| Sbjct: 1296 ccttggttcaataacgacgactcgccgcacccctggagctgacaattgctccaaaacctc 1237 Query: 161 aagcaacgtactcgtgctcaaacaggtatgacacggtctccgcccattcacctgatattg 220 || || ||||| |||||||| ||||||||||| |||| || ||||||||||| ||||| Sbjct: 1236 caggaaggtactagtgctcaagcaggtatgacagtgtcttcggccattcacctggtattg 1177 Query: 221 cagctccaaagcattctccacggtcaattgctcaagtttaatgcaagtgtaaacatcatt 280 ||||||||| |||| |||||| |||| || ||||| | ||| | |||||| |||||||| Sbjct: 1176 cagctccaaggcatgctccaccgtcacctgttcaagctcaatacgagtgtagacatcatt 1117 Query: 281 cttcgccagagccatgatatcactgagtgagtagacatcaagaagggatccattatcatc 340 ||| | |||||||||||||||||||| |||||||||||||| || | |||||||| || Sbjct: 1116 cttgcctagagccatgatatcactgagcgagtagacatcaaggagagcgccattatcgtc 1057 Query: 341 aactataggaattgagcttattctatcttccagaagaaaatccaggcaagtaattagagg 400 |||||||||||||||||||| ||||||||| || || ||||||||||| | | ||||||| Sbjct: 1056 aactataggaattgagcttactctatcttcaagcagcaaatccaggcatgaatttagagg 997 Query: 401 agcactcagtcgcgatgttctaagctgtctagtactggcccttccagtatgctgcgacca 460 || || ||||||| ||||||||||||||| | || ||| | |||||||| | ||||| Sbjct: 996 agtgcttggtcgcgaagttctaagctgtctattgcttgccttgccagtatgtggtgacca 937 Query: 461 tgtaccaataggaatactggaaatctgatttcgca-aaatgggataaccttctggttgtt 519 |||||||||||| |||||| |||||| ||| ||| ||||| | || ||||| || |||| Sbjct: 936 tgtaccaataggcatactgacaatctggttttgcagaaatgag-tacccttcaggctgtt 878 Query: 520 cttggagctttgagcaaagaaatttcaaaatccctggaagagttgcaagattaagtaacg 579 |||| ||||||||||||| |||||||| |||||||||||| ||||||||| ||| || | Sbjct: 877 cttgcagctttgagcaaataaatttcacaatccctggaagggttgcaagaccaagcaaag 818 Query: 580 gtatccctgatatatctgtcgaggacttaaagatagggactgaagatatttcattttgta 639 | ||||||||| ||| || |||| |||||||||||| |||||||||||||||||| | Sbjct: 817 gcatccctgatgaatccgttgagggcttaaagataggaactgaagatatttcatttctaa 758 Query: 640 ttatagtcagtgccacatcccttaaattatctgaatccttaacatgaaccaatggccttc 699 |||||| || |||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 757 ttatagccaatgccacatcccttaaattatctgaatccttaacatgaattaatggccttc 698 Query: 700 t 700 | Sbjct: 697 t 697
>gb|AY103582.1| Zea mays PCO147975 mRNA sequence Length = 1690 Score = 424 bits (214), Expect = e-115 Identities = 579/697 (83%), Gaps = 4/697 (0%) Strand = Plus / Minus Query: 12 ttttcatgtatgaaatggctacacaaatgttatccaaggagaaatgttattgcgtctctc 71 |||||||||||| |||||||||||| || ||||||||||||||||| | | |||||||| Sbjct: 1606 ttttcatgtatggaatggctacaca--tgctatccaaggagaaatgtaaatacgtctctc 1549 Query: 72 aatgagataattccttgcacagatttagtcatcggttcaatagcgacaagccgccgcacc 131 |||||||| ||||||| |||| || | || | |||||||| | |||||||| ||||| Sbjct: 1548 aatgagatgattccttccacaaatctggtactttgttcaataacaacaagccgtcgcact 1489 Query: 132 cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 191 ||||||| |||||| ||||| || || ||||| |||||||| ||||| |||||| Sbjct: 1488 cctggaatggacaatccctccaaaacttccagcaaggtactcgtctgtaaacaagtatga 1429 Query: 192 cacggtctccgcccattcacctgatattgcagctccaaagcattctccacggtcaattgc 251 ||| |||| || |||| |||||| ||||||| ||||||||||| | ||||||| ||| Sbjct: 1428 cactgtcttcggccatgcacctggtattgcacatccaaagcattttgtacggtcacttgt 1369 Query: 252 tcaagtttaatgcaagtgtaaacatcattcttcgccagagccatgatatcactgagtgag 311 ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1368 tcaagttcgatgcgagcataaacatcattcttcgccagagccatgatatcactgagtgag 1309 Query: 312 tagacatcaagaagggatccattatcatcaactataggaattgagcttattctatcttcc 371 ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct: 1308 tagacatcacggagggatccattgtcatcaactataggaattgagcttactctatcttga 1249 Query: 372 agaagaaaatccaggcaagtaattagaggagcactcagtcgcgatgttctaagctgtcta 431 || |||| ||||||||| ||| ||||||||| ||||||| || | ||||| || || || Sbjct: 1248 agcagaatatccaggcaggtatttagaggagaactcagtagcaaagttctgagttgcctg 1189 Query: 432 gtactggcccttccagtatgctgcgaccatgtaccaataggaatactggaaatctgattt 491 |||| | ||| || ||||| | |||||||||||||||||||||||| || |||||| Sbjct: 1188 ctacttgacctccccgtatgtggagaccatgtaccaataggaatactgagaagctgattg 1129 Query: 492 cgcaaaatgggataaccttctggttgttcttggagctttgagcaaagaaatttcaaaat- 550 ||| || || | | || || | | |||||| ||||| ||||||||||||||||| || Sbjct: 1128 tgcagaagggaacagccctcagcctcttcttgtagcttcgagcaaagaaatttcaagatc 1069 Query: 551 ccctggaagagttgcaagattaagtaacggtatccctgatatatctgtcgaggacttaaa 610 ||||| ||| |||||||||||||| || || | ||||||| ||||| | | ||||||| Sbjct: 1068 ccctgtaag-gttgcaagattaaggaaaggcacccctgatgaatctgccatgcacttaaa 1010 Query: 611 gatagggactgaagatatttcattttgtattatagtcagtgccacatcccttaaattatc 670 |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct: 1009 gataggaactgaagatatttcatttctgattatagtcagtgccacatccactaaattatc 950 Query: 671 tgaatccttaacatgaaccaatggccttctttgcatg 707 ||||||||||||||| | ||||||||||| |||||| Sbjct: 949 tgaatccttaacatggattaatggccttctctgcatg 913
>gb|BT018469.1| Zea mays clone EL01N0420G07.d mRNA sequence Length = 1601 Score = 396 bits (200), Expect = e-107 Identities = 577/698 (82%), Gaps = 6/698 (0%) Strand = Plus / Minus Query: 12 ttttcatgtatgaaatggctacacaaatgttatccaaggagaaatgttattgcgtctctc 71 |||||||||||| |||||||||||| || ||||||||||||||||| | | |||||||| Sbjct: 1512 ttttcatgtatggaatggctacaca--tgctatccaaggagaaatgtaaatacgtctctc 1455 Query: 72 aatgagataattccttgcacagatttagtcatcggttcaatagcgacaagccgccgcacc 131 |||||||| ||||||| |||| || | || | |||||||| | |||||||| ||||| Sbjct: 1454 aatgagatgattccttccacaaatctggtactttgttcaataacaacaagccgtcgcact 1395 Query: 132 cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 191 ||||||| |||||| ||||| || || ||||| |||||||| ||||| |||||| Sbjct: 1394 cctggaatggacaatccctccaaaacttccagcaaggtactcgtctgtaaacaagtatga 1335 Query: 192 cacggtctccgcccattcacctgatattgcagctccaaagcattctccacggtcaattgc 251 ||| |||| || |||| |||||| ||||||| ||||||||||| | ||||||| ||| Sbjct: 1334 cactgtcttcggccatgcacctggtattgcacatccaaagcattttgtacggtcacttgt 1275 Query: 252 tcaagtttaatgcaagtgtaaacatcattcttcgccagagccatgatatcactgagtgag 311 ||||||| |||| || |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1274 tcaagttcgatgcgagcataaacatcattcttcgccagagccatgatatcactgagtgag 1215 Query: 312 tagacatcaagaagggatccattatcatcaactataggaattgagcttattctatcttcc 371 ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||||||| Sbjct: 1214 tagacatcacggagggatccattgtcatcaactataggaattgagcttactctatcttga 1155 Query: 372 agaagaaaatccaggcaagtaattagaggagcactcagtcgcgatgttctaagctgtcta 431 || |||| ||||||||| ||| ||||||||| ||||||| || | ||||| || || || Sbjct: 1154 agcagaatatccaggcaggtatttagaggagaactcagtagcaaagttctgagttgcctg 1095 Query: 432 gtactggcccttccagtatgctgcgaccatgtaccaataggaatactggaaatctgattt 491 |||| | ||| || ||||| | |||||||||||||||||||||||| || |||||| Sbjct: 1094 ctacttgacctccccgtatgtggagaccatgtaccaataggaatactgagaagctgattg 1035 Query: 492 cgcaaaatgggataaccttctggttgttcttggagctttgagcaaagaaatttcaaaat- 550 ||| || || | | || || | | |||||| ||||| ||||||||||| ||||| || Sbjct: 1034 tgcagaagggaacagccctcagcctcttcttgtagcttcgagcaaagaaa-ttcaagatt 976 Query: 551 -ccctggaagagttgcaagattaagtaacggtatccctgatatatctgtcgaggacttaa 609 ||||| ||| || ||||||||||| || || | ||||||| ||||| | | |||||| Sbjct: 975 cccctgtaag-gtagcaagattaaggaaaggcacccctgatgaatctgccatgcacttaa 917 Query: 610 agatagggactgaagatatttcattttgtattatagtcagtgccacatcccttaaattat 669 ||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct: 916 agataggaactgaagatatttcatttctgattatagtcagtgccacatccactaaattat 857 Query: 670 ctgaatccttaacatgaaccaatggccttctttgcatg 707 |||||||||||||||| | ||||||||||| |||||| Sbjct: 856 ctgaatccttaacatggattaatggccttctctgcatg 819
>emb|AJ575236.1|OSA575236 Oryza sativa (japonica cultivar-group) partial mRNA for NF protein Length = 736 Score = 238 bits (120), Expect = 2e-59 Identities = 275/324 (84%), Gaps = 2/324 (0%) Strand = Plus / Minus Query: 378 aaatccaggcaagtaattagaggagcactcagtcgcgatgttctaagctgtctagtactg 437 ||||||||||| | | ||||||||| || ||||||| ||||||||||||||| | || Sbjct: 729 aaatccaggcatgaatttagaggagtgcttggtcgcgaagttctaagctgtctattgctt 670 Query: 438 gcccttccagtatgctgcgaccatgtaccaataggaatactggaaatctgatttcgca-a 496 ||| | |||||||| | ||||||||||||||||| |||||| |||||| ||| ||| | Sbjct: 669 gccttgccagtatgtggtgaccatgtaccaataggcatactgacaatctggttttgcaga 610 Query: 497 aatgggataaccttctggttgttcttggagctttgagcaaagaaatttcaaaatccctgg 556 |||| | || ||||| || |||||||| ||||||||||||| |||||||| ||||||||| Sbjct: 609 aatgag-tacccttcaggctgttcttgcagctttgagcaaataaatttcacaatccctgg 551 Query: 557 aagagttgcaagattaagtaacggtatccctgatatatctgtcgaggacttaaagatagg 616 ||| ||||||||| ||| || || ||||||||| ||| || |||| |||||||||||| Sbjct: 550 aagggttgcaagaccaagcaaaggcatccctgatgaatccgttgagggcttaaagatagg 491 Query: 617 gactgaagatatttcattttgtattatagtcagtgccacatcccttaaattatctgaatc 676 |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||| Sbjct: 490 aactgaagatatttcatttctaattatagccaatgccacatcccttaaattatctgaatc 431 Query: 677 cttaacatgaaccaatggccttct 700 ||||||||||| ||||||||||| Sbjct: 430 cttaacatgaattaatggccttct 407
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 141 bits (71), Expect = 4e-30 Identities = 128/147 (87%) Strand = Plus / Plus Query: 541 atttcaaaatccctggaagagttgcaagattaagtaacggtatccctgatatatctgtcg 600 |||||| |||||||||||| ||||||||| ||| || || ||||||||| ||| || | Sbjct: 17613 atttcacaatccctggaagggttgcaagaccaagcaaaggcatccctgatgaatccgttg 17672 Query: 601 aggacttaaagatagggactgaagatatttcattttgtattatagtcagtgccacatccc 660 ||| |||||||||||| |||||||||||||||||| ||||||| || ||||||||||| Sbjct: 17673 agggcttaaagataggaactgaagatatttcatttctaattatagccaatgccacatccc 17732 Query: 661 ttaaattatctgaatccttaacatgaa 687 |||||||||||||||||||||| |||| Sbjct: 17733 ttaaattatctgaatccttaacctgaa 17759 Score = 97.6 bits (49), Expect = 5e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 27 tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 86 |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| |||||| Sbjct: 14835 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 14894 Query: 87 tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctg 135 |||||| || | || | ||||||||| |||| | ||||||||||||| Sbjct: 14895 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctg 14943 Score = 83.8 bits (42), Expect = 8e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 132 cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 191 |||||| | |||||||| ||||| ||||| || || ||||| |||||||| ||||||||| Sbjct: 15055 cctggagctgacaattgctccaaaacctccaggaaggtactagtgctcaagcaggtatga 15114 Query: 192 cacggtctccgcccattcacctgatattgcagctccaa 229 || |||| || ||||||||||| |||||||||||||| Sbjct: 15115 cagtgtcttcggccattcacctggtattgcagctccaa 15152 Score = 81.8 bits (41), Expect = 3e-12 Identities = 133/161 (82%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 378 aaatccaggcaagtaattagaggagcactcagtcgcgatgttctaagctgtctagtactg 437 ||||||||||| | | ||||||||| || ||||||| ||||||||||||||| | || Sbjct: 17350 aaatccaggcatgaatttagaggagtgcttggtcgcgaagttctaagctgtctattgctt 17409 Query: 438 gcccttccagtatgctgcgaccatgtaccaataggaatactggaaatctgatttcgca-a 496 ||| | |||||||| | ||||||||||||||||| |||||| |||||| ||| ||| | Sbjct: 17410 gccttgccagtatgtggtgaccatgtaccaataggcatactgacaatctggttttgcaga 17469 Query: 497 aatgggataaccttctggttgttcttggagctttgagcaaa 537 |||| | || ||||| || |||||||| ||||||||||||| Sbjct: 17470 aatgag-tacccttcaggctgttcttgcagctttgagcaaa 17509 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 303 ctgagtgagtagacatcaagaagggatccattatcatcaactataggaattgagcttatt 362 ||||| |||||||||||||| || | |||||||| |||||||||||||||||||||| | Sbjct: 16152 ctgagcgagtagacatcaaggagagcgccattatcgtcaactataggaattgagcttact 16211 Query: 363 ctatct 368 |||||| Sbjct: 16212 ctatct 16217 Score = 48.1 bits (24), Expect = 0.042 Identities = 36/40 (90%) Strand = Plus / Plus Query: 266 agtgtaaacatcattcttcgccagagccatgatatcactg 305 |||||| ||||||||||| | |||||||||||||||||| Sbjct: 15942 agtgtagacatcattcttgcctagagccatgatatcactg 15981
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 141 bits (71), Expect = 4e-30 Identities = 128/147 (87%) Strand = Plus / Plus Query: 541 atttcaaaatccctggaagagttgcaagattaagtaacggtatccctgatatatctgtcg 600 |||||| |||||||||||| ||||||||| ||| || || ||||||||| ||| || | Sbjct: 19862805 atttcacaatccctggaagggttgcaagaccaagcaaaggcatccctgatgaatccgttg 19862864 Query: 601 aggacttaaagatagggactgaagatatttcattttgtattatagtcagtgccacatccc 660 ||| |||||||||||| |||||||||||||||||| ||||||| || ||||||||||| Sbjct: 19862865 agggcttaaagataggaactgaagatatttcatttctaattatagccaatgccacatccc 19862924 Query: 661 ttaaattatctgaatccttaacatgaa 687 |||||||||||||||||||||| |||| Sbjct: 19862925 ttaaattatctgaatccttaacctgaa 19862951 Score = 97.6 bits (49), Expect = 5e-17 Identities = 94/109 (86%) Strand = Plus / Plus Query: 27 tggctacacaaatgttatccaaggagaaatgttattgcgtctctcaatgagataattcct 86 |||||||||||||||||||||| ||||||||| | |||||| ||||||||||| |||||| Sbjct: 19860027 tggctacacaaatgttatccaatgagaaatgtaaatgcgtccctcaatgagattattcct 19860086 Query: 87 tgcacagatttagtcatcggttcaatagcgacaagccgccgcacccctg 135 |||||| || | || | ||||||||| |||| | ||||||||||||| Sbjct: 19860087 tgcacaaatctgctccttggttcaataacgacgactcgccgcacccctg 19860135 Score = 83.8 bits (42), Expect = 8e-13 Identities = 84/98 (85%) Strand = Plus / Plus Query: 132 cctggaacagacaattgatccaacacctcaagcaacgtactcgtgctcaaacaggtatga 191 |||||| | |||||||| ||||| ||||| || || ||||| |||||||| ||||||||| Sbjct: 19860247 cctggagctgacaattgctccaaaacctccaggaaggtactagtgctcaagcaggtatga 19860306 Query: 192 cacggtctccgcccattcacctgatattgcagctccaa 229 || |||| || ||||||||||| |||||||||||||| Sbjct: 19860307 cagtgtcttcggccattcacctggtattgcagctccaa 19860344 Score = 81.8 bits (41), Expect = 3e-12 Identities = 133/161 (82%), Gaps = 2/161 (1%) Strand = Plus / Plus Query: 378 aaatccaggcaagtaattagaggagcactcagtcgcgatgttctaagctgtctagtactg 437 ||||||||||| | | ||||||||| || ||||||| ||||||||||||||| | || Sbjct: 19862542 aaatccaggcatgaatttagaggagtgcttggtcgcgaagttctaagctgtctattgctt 19862601 Query: 438 gcccttccagtatgctgcgaccatgtaccaataggaatactggaaatctgatttcgca-a 496 ||| | |||||||| | ||||||||||||||||| |||||| |||||| ||| ||| | Sbjct: 19862602 gccttgccagtatgtggtgaccatgtaccaataggcatactgacaatctggttttgcaga 19862661 Query: 497 aatgggataaccttctggttgttcttggagctttgagcaaa 537 |||| | || ||||| || |||||||| ||||||||||||| Sbjct: 19862662 aatgag-tacccttcaggctgttcttgcagctttgagcaaa 19862701 Score = 75.8 bits (38), Expect = 2e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 303 ctgagtgagtagacatcaagaagggatccattatcatcaactataggaattgagcttatt 362 ||||| |||||||||||||| || | |||||||| |||||||||||||||||||||| | Sbjct: 19861344 ctgagcgagtagacatcaaggagagcgccattatcgtcaactataggaattgagcttact 19861403 Query: 363 ctatct 368 |||||| Sbjct: 19861404 ctatct 19861409 Score = 48.1 bits (24), Expect = 0.042 Identities = 36/40 (90%) Strand = Plus / Plus Query: 266 agtgtaaacatcattcttcgccagagccatgatatcactg 305 |||||| ||||||||||| | |||||||||||||||||| Sbjct: 19861134 agtgtagacatcattcttgcctagagccatgatatcactg 19861173
>gb|AC137749.11| Mus musculus chromosome 6, clone RP23-69C16, complete sequence Length = 293695 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 289 gagccatgatatcactgagtgagtagac 316 |||||||||||||||||||| ||||||| Sbjct: 206083 gagccatgatatcactgagtcagtagac 206110
>gb|AC036121.11| Mus musculus chromosome 6, clone RP23-158O9, complete sequence Length = 215685 Score = 48.1 bits (24), Expect = 0.042 Identities = 27/28 (96%) Strand = Plus / Plus Query: 289 gagccatgatatcactgagtgagtagac 316 |||||||||||||||||||| ||||||| Sbjct: 97586 gagccatgatatcactgagtcagtagac 97613
>gb|AC125255.15| Mus musculus chromosome 5, clone RP24-332C17, complete sequence Length = 173258 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 628 tttcattttgtattatagtca 648 ||||||||||||||||||||| Sbjct: 149387 tttcattttgtattatagtca 149367
>gb|AY382211.1| Polistes cavapyta cytochrome oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 378 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 ccattatcatcaactatagga 350 ||||||||||||||||||||| Sbjct: 80 ccattatcatcaactatagga 100
>emb|AL512451.7| Human DNA sequence from clone RP11-401G10 on chromosome 6, complete sequence Length = 59449 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 tccagaagaaaatccaggcaa 389 ||||||||||||||||||||| Sbjct: 38633 tccagaagaaaatccaggcaa 38613
>emb|AL391277.16| Human DNA sequence from clone RP11-357C3 on chromosome X, complete sequence Length = 194456 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 tccagaagaaaatccaggcaa 389 ||||||||||||||||||||| Sbjct: 55291 tccagaagaaaatccaggcaa 55311
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 gccgccgcacccctggaacag 141 ||||||||||||||||||||| Sbjct: 403823 gccgccgcacccctggaacag 403843
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 438 gcccttccagtatgctgcgac 458 ||||||||||||||||||||| Sbjct: 846143 gcccttccagtatgctgcgac 846123
>gb|AC161620.5| Pan troglodytes BAC clone CH251-232H7 from chromosome unknown, complete sequence Length = 204271 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 tacaacaggcttttcatgtat 22 ||||||||||||||||||||| Sbjct: 126472 tacaacaggcttttcatgtat 126492 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,697,707 Number of Sequences: 3902068 Number of extensions: 6697707 Number of successful extensions: 154271 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 154127 Number of HSP's gapped (non-prelim): 127 length of query: 748 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 725 effective length of database: 17,143,297,704 effective search space: 12428890835400 effective search space used: 12428890835400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
