ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14i08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK101614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052E24, full insert sequence Length = 1793 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Minus Query: 281 aagtagccacagcactcccaggcagaaagatagcagccagtgaccagatttttcacctgg 340 |||||||||| ||||||||||||||||||| | || ||||| ||||||| |||||||| Sbjct: 1501 aagtagccactgcactcccaggcagaaagacaacatccagtagccagattcttcacctgt 1442 Query: 341 gggaataagaaagcatttcttccattgttggatatcattaggctgtgtgcagtattgttc 400 || || |||||| | ||| | ||||||||||| |||| ||||||| |||||||| || Sbjct: 1441 ggaaacaagaaaacctttgtgccattgttggagatcagcaggctgtacgcagtattattg 1382 Query: 401 tcatgca 407 ||||||| Sbjct: 1381 tcatgca 1375 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 538 tgcaacagttgaggcagactccactggtaaaggattagcaaagtagcaggcctgaaaaaa 597 |||||||||||| |||||||||||||| || || || || ||||| || ||||||||||| Sbjct: 1244 tgcaacagttgatgcagactccactggcaacgggtttgcgaagtaacaagcctgaaaaaa 1185 Query: 598 catgtg 603 |||||| Sbjct: 1184 catgtg 1179
>dbj|AK060783.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-C11, full insert sequence Length = 1667 Score = 85.7 bits (43), Expect = 2e-13 Identities = 106/127 (83%) Strand = Plus / Minus Query: 281 aagtagccacagcactcccaggcagaaagatagcagccagtgaccagatttttcacctgg 340 |||||||||| ||||||||||||||||||| | || ||||| ||||||| |||||||| Sbjct: 1375 aagtagccactgcactcccaggcagaaagacaacatccagtagccagattcttcacctgt 1316 Query: 341 gggaataagaaagcatttcttccattgttggatatcattaggctgtgtgcagtattgttc 400 || || |||||| | ||| | ||||||||||| |||| ||||||| |||||||| || Sbjct: 1315 ggaaacaagaaaacctttgtgccattgttggagatcagcaggctgtacgcagtattattg 1256 Query: 401 tcatgca 407 ||||||| Sbjct: 1255 tcatgca 1249 Score = 67.9 bits (34), Expect = 4e-08 Identities = 58/66 (87%) Strand = Plus / Minus Query: 538 tgcaacagttgaggcagactccactggtaaaggattagcaaagtagcaggcctgaaaaaa 597 |||||||||||| |||||||||||||| || || || || ||||| || ||||||||||| Sbjct: 1118 tgcaacagttgatgcagactccactggcaacgggtttgcgaagtaacaagcctgaaaaaa 1059 Query: 598 catgtg 603 |||||| Sbjct: 1058 catgtg 1053
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 281 aagtagccacagcactcccaggcagaaagatagcagccagtgaccagatttttcacct 338 |||||||||| ||||||||||||||||||| | || ||||| ||||||| ||||||| Sbjct: 25922812 aagtagccactgcactcccaggcagaaagacaacatccagtagccagattcttcacct 25922869 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 538 tgcaacagttgaggcagactccactgg 564 |||||||||||| |||||||||||||| Sbjct: 25923163 tgcaacagttgatgcagactccactgg 25923189 Score = 42.1 bits (21), Expect = 2.2 Identities = 63/77 (81%) Strand = Plus / Plus Query: 331 tttcacctgggggaataagaaagcatttcttccattgttggatatcattaggctgtgtgc 390 ||||||||| || || |||||| | ||| | ||||||||||| |||| ||||||| || Sbjct: 25922956 tttcacctgtggaaacaagaaaacctttgtgccattgttggagatcagcaggctgtacgc 25923015 Query: 391 agtattgttctcatgca 407 |||||| || ||||||| Sbjct: 25923016 agtattattgtcatgca 25923032
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Plus Query: 281 aagtagccacagcactcccaggcagaaagatagcagccagtgaccagatttttcacct 338 |||||||||| ||||||||||||||||||| | || ||||| ||||||| ||||||| Sbjct: 25850988 aagtagccactgcactcccaggcagaaagacaacatccagtagccagattcttcacct 25851045 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 538 tgcaacagttgaggcagactccactgg 564 |||||||||||| |||||||||||||| Sbjct: 25851339 tgcaacagttgatgcagactccactgg 25851365 Score = 42.1 bits (21), Expect = 2.2 Identities = 63/77 (81%) Strand = Plus / Plus Query: 331 tttcacctgggggaataagaaagcatttcttccattgttggatatcattaggctgtgtgc 390 ||||||||| || || |||||| | ||| | ||||||||||| |||| ||||||| || Sbjct: 25851132 tttcacctgtggaaacaagaaaacctttgtgccattgttggagatcagcaggctgtacgc 25851191 Query: 391 agtattgttctcatgca 407 |||||| || ||||||| Sbjct: 25851192 agtattattgtcatgca 25851208
>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 61296 Score = 60.0 bits (30), Expect = 9e-06 Identities = 51/58 (87%) Strand = Plus / Minus Query: 281 aagtagccacagcactcccaggcagaaagatagcagccagtgaccagatttttcacct 338 |||||||||| ||||||||||||||||||| | || ||||| ||||||| ||||||| Sbjct: 52477 aagtagccactgcactcccaggcagaaagacaacatccagtagccagattcttcacct 52420 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Minus Query: 538 tgcaacagttgaggcagactccactgg 564 |||||||||||| |||||||||||||| Sbjct: 52126 tgcaacagttgatgcagactccactgg 52100 Score = 42.1 bits (21), Expect = 2.2 Identities = 63/77 (81%) Strand = Plus / Minus Query: 331 tttcacctgggggaataagaaagcatttcttccattgttggatatcattaggctgtgtgc 390 ||||||||| || || |||||| | ||| | ||||||||||| |||| ||||||| || Sbjct: 52333 tttcacctgtggaaacaagaaaacctttgtgccattgttggagatcagcaggctgtacgc 52274 Query: 391 agtattgttctcatgca 407 |||||| || ||||||| Sbjct: 52273 agtattattgtcatgca 52257
>gb|AY023700.1| Oryza sativa microsatellite MRG6025 containing (AAAT)X6, genomic sequence Length = 224 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 538 tgcaacagttgaggcagactccactgg 564 |||||||||||| |||||||||||||| Sbjct: 29 tgcaacagttgatgcagactccactgg 55
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 516 atctggttgtcccatcgtataa 537 |||||||||||||||||||||| Sbjct: 740364 atctggttgtcccatcgtataa 740343
>gb|AC117231.4| Mus musculus BAC clone RP23-394M5 from 8, complete sequence Length = 195936 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 183 ggtcttcaaagtcaccatcttggaac 208 |||||||||| ||||||||||||||| Sbjct: 88865 ggtcttcaaaatcaccatcttggaac 88840
>ref|XM_420552.1| PREDICTED: Gallus gallus similar to Rho GTPase activating protein 24 (LOC422593), mRNA Length = 2262 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 ccaggcagaaagatagcagccagtg 322 |||||||||||||||||| |||||| Sbjct: 221 ccaggcagaaagatagcacccagtg 197
>ref|XM_584791.2| PREDICTED: Bos taurus liprin beta1 (lip beta1), mRNA Length = 4772 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccatcttgg 205 ||||||||||||||| ||||||||| Sbjct: 1017 caggtcttcaaagtcgccatcttgg 993
>gb|AC135809.4| Mus musculus BAC clone RP23-353F16 from chromosome 7, complete sequence Length = 195041 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 424 actgactacatcgataagtgc 444 ||||||||||||||||||||| Sbjct: 163527 actgactacatcgataagtgc 163507
>emb|Z93403.1|HS308O1 Human DNA sequence from clone RP1-308O1 on chromosome Xp11.3-11.4 Contains part of a novel gene, complete sequence Length = 166715 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 aggcttaggtaacaaggtcat 155 ||||||||||||||||||||| Sbjct: 38742 aggcttaggtaacaaggtcat 38722
>gb|AC111017.23| Mus musculus chromosome 13, clone RP23-62F4, complete sequence Length = 239344 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 514 tgatctggttgtcccatcgta 534 ||||||||||||||||||||| Sbjct: 63260 tgatctggttgtcccatcgta 63240
>gb|AC022201.4| Homo sapiens BAC clone RP11-245N4 from 2, complete sequence Length = 139833 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 acagagttttttcaggtcttcaaag 193 |||||||||||||| |||||||||| Sbjct: 29900 acagagttttttcaagtcttcaaag 29924
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 atttcttccattgttggatat 375 ||||||||||||||||||||| Sbjct: 1396331 atttcttccattgttggatat 1396351
>ref|XM_875070.1| PREDICTED: Bos taurus similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 7 (LOC514945), mRNA Length = 4207 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2408 caggtcttcaaagtcaccat 2389
>ref|XM_874985.1| PREDICTED: Bos taurus similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 6 (LOC514945), mRNA Length = 4210 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2408 caggtcttcaaagtcaccat 2389
>ref|XM_874911.1| PREDICTED: Bos taurus similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 5 (LOC514945), mRNA Length = 4207 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2408 caggtcttcaaagtcaccat 2389
>ref|XM_874827.1| PREDICTED: Bos taurus similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 4 (LOC514945), mRNA Length = 4207 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2408 caggtcttcaaagtcaccat 2389
>ref|XM_874739.1| PREDICTED: Bos taurus similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 3 (LOC514945), mRNA Length = 4000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2408 caggtcttcaaagtcaccat 2389
>ref|XM_592865.2| PREDICTED: Bos taurus similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 1 (LOC514945), mRNA Length = 3199 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2408 caggtcttcaaagtcaccat 2389
>ref|XM_864918.1| PREDICTED: Bos taurus similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 2 (LOC514945), mRNA Length = 4201 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2408 caggtcttcaaagtcaccat 2389
>ref|XM_658111.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5599.2), mRNA Length = 2250 Score = 40.1 bits (20), Expect = 8.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 249 cttgctcgaaatcaactttggtgtgataaaca 280 |||| ||||||||||||||| ||| ||||||| Sbjct: 1377 cttgttcgaaatcaactttgttgttataaaca 1346
>ref|XM_534956.2| PREDICTED: Canis familiaris similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 1 (LOC477760), mRNA Length = 4194 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2407 caggtcttcaaagtcaccat 2388
>ref|XM_852300.1| PREDICTED: Canis familiaris similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 6 (LOC477760), mRNA Length = 3426 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 1639 caggtcttcaaagtcaccat 1620
>ref|XM_852256.1| PREDICTED: Canis familiaris similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 5 (LOC477760), mRNA Length = 4203 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2407 caggtcttcaaagtcaccat 2388
>ref|XM_852179.1| PREDICTED: Canis familiaris similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 3 (LOC477760), mRNA Length = 3358 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2407 caggtcttcaaagtcaccat 2388
>ref|XM_852137.1| PREDICTED: Canis familiaris similar to Ribosome biogenesis protein BMS1 homolog, transcript variant 2 (LOC477760), mRNA Length = 3300 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 caggtcttcaaagtcaccat 200 |||||||||||||||||||| Sbjct: 2407 caggtcttcaaagtcaccat 2388
>gb|AC121767.3| Mus musculus BAC clone RP23-339E1 from chromosome 1, complete sequence Length = 184736 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 tcagacacacaaatgcctga 516 |||||||||||||||||||| Sbjct: 26207 tcagacacacaaatgcctga 26188
>gb|AC125205.4| Mus musculus BAC clone RP23-238I2 from 14, complete sequence Length = 205957 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 agaaagatagcagccagtga 323 |||||||||||||||||||| Sbjct: 154769 agaaagatagcagccagtga 154788
>emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chromosome 1 Contains the 3' end of a novel gene (FLJ10876), the TRAF5 gene for TNF receptor-associated factor 5, a novel gene (MGC14801), a sorting nexin 25 (SNX25) pseudogene and a actin related protein 2/3 complex, subunit 3 21kDa (ARPC3) pseudogene, complete sequence Length = 180169 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tcttcaaagtcaccatcttg 204 |||||||||||||||||||| Sbjct: 143154 tcttcaaagtcaccatcttg 143135
>emb|AL358119.12| Human DNA sequence from clone RP11-331P7 on chromosome 1, complete sequence Length = 157124 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 tcttcaaagtcaccatcttg 204 |||||||||||||||||||| Sbjct: 102750 tcttcaaagtcaccatcttg 102769
>emb|AL356140.16| Human DNA sequence from clone RP11-268H18 on chromosome 10, complete sequence Length = 139968 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 tcttcaaagtcaccatcttg 204 |||||||||||||||||||| Sbjct: 84495 tcttcaaagtcaccatcttg 84476
>gb|AC090574.6| Homo sapiens chromosome 8, clone RP11-449M6, complete sequence Length = 172969 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 gttctcatgcaaagctaagc 416 |||||||||||||||||||| Sbjct: 127064 gttctcatgcaaagctaagc 127083
>emb|CR391926.10| Zebrafish DNA sequence from clone CH211-275N22 in linkage group 1, complete sequence Length = 147649 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tctatagttgcagttacatt 77 |||||||||||||||||||| Sbjct: 120578 tctatagttgcagttacatt 120597
>emb|BX537303.10| Zebrafish DNA sequence from clone DKEYP-73E12, complete sequence Length = 204522 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cgcaacagagttttttcagg 184 |||||||||||||||||||| Sbjct: 68676 cgcaacagagttttttcagg 68695
>gb|AC108107.2| Homo sapiens chromosome 5 clone RP11-217L10, complete sequence Length = 94292 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 actatttcagacacacaaat 510 |||||||||||||||||||| Sbjct: 13128 actatttcagacacacaaat 13147
>gb|AC092377.3| Homo sapiens chromosome 16 clone RP11-680G10, complete sequence Length = 207283 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tggaaattccagtctcagaa 247 |||||||||||||||||||| Sbjct: 204563 tggaaattccagtctcagaa 204544
>gb|AY189902.1| Lactococcus lactis strain CNRZ 437 oligopeptide binding protein OppA (oppA) gene, complete cds Length = 1803 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tttcttccattgttggatat 375 |||||||||||||||||||| Sbjct: 1371 tttcttccattgttggatat 1352
>gb|AY189901.1| Lactococcus lactis strain MG1363 oligopeptide binding protein OppA (oppA) gene, complete cds Length = 1803 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tttcttccattgttggatat 375 |||||||||||||||||||| Sbjct: 1371 tttcttccattgttggatat 1352
>gb|AY189900.1| Lactococcus lactis strain Wg2 oligopeptide binding protein OppA (oppA) gene, complete cds Length = 1803 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tttcttccattgttggatat 375 |||||||||||||||||||| Sbjct: 1371 tttcttccattgttggatat 1352
>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence Length = 202543 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 cataaaccaccaaacacagggaat 36 |||||||||||||||||| ||||| Sbjct: 124592 cataaaccaccaaacacacggaat 124615
>gb|AY829480.1| Banksia elegans clone colony 3f waxy gene, exons 7 through 10 and partial cds Length = 944 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 gttttttcaggtcttcaaag 193 |||||||||||||||||||| Sbjct: 506 gttttttcaggtcttcaaag 525
>dbj|AB045235.1| Wolbachia sp. wKueYO ribA, virB8, virB9, virB10, virB11, virD4, wsp genes, complete cds Length = 9386 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 483 ggtaatcaactatttcagacacac 506 ||||||||||||||||| |||||| Sbjct: 8797 ggtaatcaactatttcacacacac 8820
>gb|AC092275.3| Homo sapiens chromosome 16 clone CTC-786C10, complete sequence Length = 191996 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 tggaaattccagtctcagaa 247 |||||||||||||||||||| Sbjct: 51375 tggaaattccagtctcagaa 51356
>dbj|BS000205.2| Pan troglodytes chromosome 22 clone:RP43-093B21, map 22, complete sequences Length = 203521 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tcacctgggggaataagaaa 352 |||||||||||||||||||| Sbjct: 145289 tcacctgggggaataagaaa 145308
>gb|CP000033.1| Lactobacillus acidophilus NCFM, complete genome Length = 1993564 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 tcgtataatgcaacagttga 549 |||||||||||||||||||| Sbjct: 1346748 tcgtataatgcaacagttga 1346767
>gb|AC149285.5| Mus musculus BAC clone RP23-139J2 from 5, complete sequence Length = 201978 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 aaaccaccaaacacagggaa 35 |||||||||||||||||||| Sbjct: 112739 aaaccaccaaacacagggaa 112758
>gb|AY919674.1| Homo sapiens amyloid beta (A4) precursor protein (protease nexin-II, Alzheimer disease) (APP) gene, complete cds Length = 293960 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tcacctgggggaataagaaa 352 |||||||||||||||||||| Sbjct: 233994 tcacctgggggaataagaaa 233975
>dbj|AP001695.1| Homo sapiens genomic DNA, chromosome 21q, section 39/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tcacctgggggaataagaaa 352 |||||||||||||||||||| Sbjct: 6604 tcacctgggggaataagaaa 6623
>gb|AE017196.1| Wolbachia endosymbiont of Drosophila melanogaster, complete genome Length = 1267782 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 483 ggtaatcaactatttcagacacac 506 ||||||||||||||||| |||||| Sbjct: 11117 ggtaatcaactatttcacacacac 11140
>gb|AC140230.3| Mus musculus BAC clone RP24-493E4 from 14, complete sequence Length = 154085 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 agaaagatagcagccagtga 323 |||||||||||||||||||| Sbjct: 134776 agaaagatagcagccagtga 134757
>emb|CR407598.24| Zebrafish DNA sequence from clone CH211-141I4 in linkage group 1, complete sequence Length = 153682 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 tctatagttgcagttacatt 77 |||||||||||||||||||| Sbjct: 77240 tctatagttgcagttacatt 77259
>gb|DQ149244.1| Lactococcus lactis plasmid pSK11L, complete sequence Length = 47165 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 356 tttcttccattgttggatat 375 |||||||||||||||||||| Sbjct: 40658 tttcttccattgttggatat 40677
>gb|AC099643.5| Mus musculus chromosome 7, clone RP24-350G1, complete sequence Length = 139303 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 13 cataaaccaccaaacacagggaat 36 |||||||||||||||||| ||||| Sbjct: 107764 cataaaccaccaaacacacggaat 107787
>gb|L18760.1|LACOLIGPEP Lactococcus lactis oppD, oppF, oppB, oppC, oppA and pepO genes, complete cds's Length = 8298 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 356 tttcttccattgttggatat 375 |||||||||||||||||||| Sbjct: 5486 tttcttccattgttggatat 5467
>dbj|AP000141.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region, clone B2291C14-R44F3, segment 6/10, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tcacctgggggaataagaaa 352 |||||||||||||||||||| Sbjct: 44900 tcacctgggggaataagaaa 44919
>dbj|D87675.1| Homo sapiens DNA for amyloid precursor protein, complete cds Length = 301692 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tcacctgggggaataagaaa 352 |||||||||||||||||||| Sbjct: 237712 tcacctgggggaataagaaa 237693
>dbj|AP001442.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:T1715, LL56-APP region, complete sequence Length = 68001 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tcacctgggggaataagaaa 352 |||||||||||||||||||| Sbjct: 28028 tcacctgggggaataagaaa 28047
>dbj|AP000088.1| Homo sapiens genomic DNA of 21q22.1, APP related, B2291C14-T1533 region, segment 5/7 Length = 161014 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 333 tcacctgggggaataagaaa 352 |||||||||||||||||||| Sbjct: 144900 tcacctgggggaataagaaa 144919 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,131,337 Number of Sequences: 3902068 Number of extensions: 6131337 Number of successful extensions: 127873 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127657 Number of HSP's gapped (non-prelim): 216 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
