>Y2006_MYCTU (Q10850) Hypothetical glycosyl hydrolase Rv2006/MT2062 (EC 3.2.1.-)|
          Length = 1327

 Score = 48.9 bits (115), Expect(2) = 2e-11
 Identities = 26/52 (50%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
 Frame = -3

Query: 631 GSTRKLRMSQGRMVFEVRPTIKWDKGKALEFLLESLGFADCSN--VLPVYIG 482
           G    LR++ GR V E+RP I WDKGKAL+++ E LG A+      LP+YIG
Sbjct: 420 GHAAGLRVTTGRKVVELRPDIAWDKGKALDWIGERLGPAEVGPDLRLPIYIG 471



 Score = 39.7 bits (91), Expect(2) = 2e-11
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
 Frame = -1

Query: 495 PSTSGDDRTDEDAFKVLRRRGQGVGILVSKH-PKDTSASFSLQEPAEVMEFLLRL 334
           P   GDD TDEDAF  +R  G G+ +  ++H  + ++A+F L+ P  V +FL +L
Sbjct: 467 PIYIGDDLTDEDAFDAVRFTGVGIVVRHNEHGDRRSAATFRLECPYTVCQFLSQL 521

>HUL4_YEAST (P40985) Probable ubiquitin-protein ligase HUL4 (EC 6.3.2.-) (HECT|
           ubiquitin ligase 4)
          Length = 892

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
 Frame = +2

Query: 293 RSLRRALE--SCFHSTRRRRNSMTSAGSCSEKDALVSLGCLETRIPTPWPLRRSTLKASS 466
           RSL  +++  SC +S   +RNS  S     +K  L+SL CL   +P  +P   +  + S+
Sbjct: 45  RSLAASVKDGSCSNSKSNKRNSSASVSGEEDKSCLISLNCLCCGVPLRFPASITKFRCSA 104

Query: 467 S----VRSSPDVDGQHVAAVGEAQRLEQELEGLALV 562
                +   P+++      +  +  +   LEGL +V
Sbjct: 105 CQVTVIVKEPEINSN----LESSTHISCTLEGLQMV 136

>LAMB2_MOUSE (Q61292) Laminin beta-2 chain precursor (S-laminin) (S-LAM)|
          Length = 1799

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
 Frame = +2

Query: 224  TRSELISPAGRSSWSSDQAWACRRSLRRALESCFHSTRRRRNSMTSAGSCSEKDALVSLG 403
            TR +  +   R+  + D+A A R  + +A +      +  ++ ++  G+  +   +V+  
Sbjct: 1481 TRRQAEAAQQRAQAALDKANASRGQVEQANQELRELIQNVKDFLSQEGADPDSIEMVATR 1540

Query: 404  CLETRIP-TPWPLRRSTLKASSSVRSSPDVDGQHVAAVGEAQRLEQELE 547
             L+  IP +P  ++R   + +  VRS  DVD      +G+ +R EQ L+
Sbjct: 1541 VLDISIPASPEQIQRLASEIAERVRSLADVDTILAHTMGDVRRAEQLLQ 1589

>GLNE_CAUCR (Q9A4S7) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)|
            ([Glutamate--ammonia-ligase] adenylyltransferase)
            (Glutamine-synthetase adenylyltransferase) (ATase)
          Length = 986

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +2

Query: 434  PLRRSTLKASSSVRSSPDVDGQHVAAVGEAQRLEQELEGLALVPLDGGPHLEHHPPLRHA 613
            PLR++T +A +++R +   D   ++ +  A RLEQ+L  L  V L+ G  +E  P    A
Sbjct: 892  PLRQNTGEALAALREAGLADAGALSRLEAAWRLEQDLSQLIKVALEDGADVEVEPKAFKA 951

Query: 614  QLS 622
             L+
Sbjct: 952  LLA 954

>LAMB2_RAT (P15800) Laminin beta-2 chain precursor (S-laminin) (Laminin chain|
            B3)
          Length = 1801

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
 Frame = +2

Query: 224  TRSELISPAGRSSWSSDQAWACRRSLRRALESCFHSTRRRRNSMTSAGSCSEKDALVSLG 403
            TR +      R+  + D+A A R  + +A +      +  ++ ++  G+  +   +V+  
Sbjct: 1483 TRRQAEEAQQRAQAALDKANASRGQVEQANQELRELIQNVKDFLSQEGADPDSIEMVATR 1542

Query: 404  CLETRIP-TPWPLRRSTLKASSSVRSSPDVDGQHVAAVGEAQRLEQELE 547
             L+  IP +P  ++R   + +  VRS  DVD      +G+ +R EQ L+
Sbjct: 1543 VLDISIPASPEQIQRLASEIAERVRSLADVDTILAHTMGDVRRAEQLLQ 1591

>DYR1B_MOUSE (Q9Z188) Dual specificity tyrosine-phosphorylation-regulated kinase|
           1B (EC 2.7.12.1)
          Length = 589

 Score = 33.1 bits (74), Expect = 0.72
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +3

Query: 492 TGSTLLQSAKPSDSSRNSRALPLSHLMVGRTSNTIRPCDMRSFRVLPHHPL 644
           T S++  S   S SS ++RA   S+   G     I  C+M S +VLP  PL
Sbjct: 423 TASSISSSGGSSGSSNDNRAYRYSNRYCGGPGPPITDCEMNSPQVLPSQPL 473

>TPP1_SCHPO (P78875) Trehalose-phosphatase (EC 3.1.3.12) (Trehalose 6-phosphate|
           phosphatase) (TPP)
          Length = 817

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -1

Query: 486 SGDDRTDEDAFKVLRR-----RGQGVGILVSKHPKDTSASFSLQEPAEVMEFLLRLVEW 325
           +GDDRTDED F+ L +     +     + +    K + A + + +PA V++ L  L  +
Sbjct: 757 AGDDRTDEDMFRSLHKNTRINKETSFAVTIGSDKKLSIADWCIADPANVIDILADLANF 815

>SFRIP_HUMAN (Q99590) SFRS2-interacting protein (Splicing factor,|
           arginine/serine-rich 2-interacting protein)
           (SC35-interacting protein 1) (CTD-associated SR protein
           11) (Splicing regulatory protein 129) (SRrp129)
           (NY-REN-40 antigen)
          Length = 1148

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = +2

Query: 242 SPAGRSSWSSDQAWACRRSLRRALESCFHSTRRRRNSMTSAGSCSEKD 385
           +PA RS W+S  +WA R++L   +++ ++S R R +S   +G   +++
Sbjct: 820 TPADRSGWTSASSWAVRKTLPADVQN-YYSRRGRNSSGPQSGWMKQEE 866

>BATF_MOUSE (O35284) ATF-like basic leucine zipper transcription factor B-ATF|
          Length = 125

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = +2

Query: 410 ETRIPTPWPLRRSTLKASSSVRSSPDVDGQHVAAVGEAQRLEQELEGLALVPLDGGPHLE 589
           + RI      +R T KA +    S D++ Q+ A   E ++L +EL+    V       L 
Sbjct: 35  KNRIAAQKSRQRQTQKADTLHLESEDLEKQNAALRKEIKQLTEELKYFTSV-------LS 87

Query: 590 HHPPLRHAQLSGTPASP 640
            H PL     SGTP+ P
Sbjct: 88  SHEPLCSVLASGTPSPP 104

>LIRB3_HUMAN (O75022) Leukocyte immunoglobulin-like receptor subfamily B member|
           3 precursor (Leukocyte immunoglobulin-like receptor 3)
           (LIR-3) (Immunoglobulin-like transcript 5) (ILT-5)
           (Monocyte inhibitory receptor HL9) (CD85a antigen)
          Length = 631

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 28/103 (27%), Positives = 44/103 (42%)
 Frame = +2

Query: 335 RRRRNSMTSAGSCSEKDALVSLGCLETRIPTPWPLRRSTLKASSSVRSSPDVDGQHVAAV 514
           RR+R+S        + D     G  ET      P  R  L+ SS    + DV  +++ A 
Sbjct: 465 RRQRHSKHRTSDQRKTDFQRPAGAAETE-----PKDRGLLRRSSP---AADVQEENLYAA 516

Query: 515 GEAQRLEQELEGLALVPLDGGPHLEHHPPLRHAQLSGTPASPP 643
            +  + E  +E  +  P D  PH   + P++H+      ASPP
Sbjct: 517 VKDTQSEDGVELDSQSPHDEDPHAVTYAPVKHSSPRREMASPP 559

>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 511

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 496 PVYIGRRPHRRGRLQGAAAEGPGRRDPRLQAPQ 398
           P   GRR  RRGR +G      G  DPR +AP+
Sbjct: 136 PARGGRRGRRRGRGRGGPGAADGLSDPRRRAPR 168

>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 512

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 496 PVYIGRRPHRRGRLQGAAAEGPGRRDPRLQAPQ 398
           P   GRR  RRGR +G      G  DPR +AP+
Sbjct: 136 PARGGRRGRRRGRGRGGPGAADGLSDPRRRAPR 168

>RDRP_MRNV (Q6XNL5) RNA-directed RNA polymerase (EC 2.7.7.48) (RdRp) (RNA|
            replicase)
          Length = 1045

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 353  MTSAGSCSEKDALVSLGCLETRIPTPWPLRRSTLKASSSVRSSPDVDGQHVAAVGEAQ 526
            +T+A +  E+  L++L      +  PW ++    +  S  + + D+DGQ V AV E Q
Sbjct: 850  VTAARTGFEESKLINLISQFQSVHDPWDIKPLDYQEPSPYKDTLDIDGQPVDAVDERQ 907

>DHSB_BACSU (P08066) Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)|
          Length = 252

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -3

Query: 610 MSQGRMVFEVRPTIKWDKGKALEFLLESLGFADCSN 503
           MSQ R+ F   PT   +K + LE L++  G ADC N
Sbjct: 179 MSQVRL-FNAHPTGAMNKSERLEALMDEGGLADCGN 213

>ASCL2_MOUSE (O35885) Achaete-scute homolog 2 (Mash-2)|
          Length = 263

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 41/136 (30%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
 Frame = +2

Query: 266 SSDQAWACRRSLRRALESCFHSTRRRRNSMTSAGSCSEKDA-----------LVSLGCLE 412
           SS  A AC    R+A       +RRRR+  T A S S   A           LV+LG   
Sbjct: 81  SSGVAGACAARRRQASPELLRCSRRRRSGATEASSSSAAVARRNERERNRVKLVNLGFQA 140

Query: 413 TRIPTPWPLRRSTLKASSSVRSSPDVDGQHVAAVGEAQRLEQELEGLALVPLDGGPHLEH 592
            R   P       L    ++RS+       V  +   QRL  E + +    L GG     
Sbjct: 141 LRQHVPHGGANKKLSKVETLRSA-------VEYIRALQRLLAEHDAVR-AALAGGLLTPA 192

Query: 593 HPPLRH-AQLSGTPAS 637
            PP    AQ S +PAS
Sbjct: 193 TPPSDECAQPSASPAS 208

>LAMB2_HUMAN (P55268) Laminin beta-2 chain precursor (S-laminin) (Laminin B1s|
            chain)
          Length = 1798

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
 Frame = +2

Query: 224  TRSELISPAGRSSWSSDQAWACRRSLRRALESCFHSTRRRRNSMTSAGSCSEKDALVSLG 403
            TR +      R+  + D+A A R  + +A +      +  ++ +   G+  +   +V+  
Sbjct: 1480 TRRQASEAQQRAQAALDKANASRGQVEQANQELQELIQSVKDFLNQEGADPDSIEMVATR 1539

Query: 404  CLETRIP-TPWPLRRSTLKASSSVRSSPDVDGQHVAAVGEAQRLEQELE 547
             LE  IP +   ++      +  VRS  DVD      VG+ +R EQ L+
Sbjct: 1540 VLELSIPASAEQIQHLAGAIAERVRSLADVDAILARTVGDVRRAEQLLQ 1588

>TPP_ENCCU (Q8SSL0) Probable trehalose-phosphatase (EC 3.1.3.12) (Trehalose|
           6-phosphate phosphatase) (TPP)
          Length = 718

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 486 SGDDRTDEDAFKVLRRRGQGVGILVSKHPKDTSASFSLQEPAEVMEFLLRLVE 328
           +GDD  DED F V +      G  +    + TSA++ +++P      L RL+E
Sbjct: 672 AGDDVADEDMFDVCK------GYTIKVGDQSTSAAYRVKDPENFRMLLGRLLE 718

>GAG_JSRV (P31622) Gag polyprotein [Contains: Core protein p10; Core protein|
           p18; Core protein p12; Core protein p27; Core protein
           p14; Core protein p4]
          Length = 612

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 29  G*FTCMHSRYSVGIHPQKKKGVVRTQHVAPQCPTGSPW 142
           G F C    +   + PQK +  V T ++ P+C  G  W
Sbjct: 508 GCFVCGQPGHRAAVCPQKHQTSVNTPNLCPRCKKGKHW 545

>NU1M_OENBE (P31839) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 331

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = -1

Query: 459 AFKVLRRRGQGVGILVSKHPKDTSASFSLQEPAEVMEFLLRLVEW 325
           +F +L+    G+ +++ +    +SA+FSL   A V  F+L LV W
Sbjct: 51  SFGLLQPLADGLKLILKEPISPSSANFSLFRMAPVATFMLSLVAW 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,778,806
Number of Sequences: 219361
Number of extensions: 1655573
Number of successful extensions: 5326
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5323
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)