ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ436930.1| Phalaris canariensis ramosa 3 (RA3) mRNA, partial... 400 e-108
2gb|DQ436928.1| Eragrostis tef ramosa 3 (RA3) mRNA, partial cds 392 e-106
3ref|XM_482349.1| Oryza sativa (japonica cultivar-group), mRNA 295 9e-77
4ref|XM_450681.1| Oryza sativa (japonica cultivar-group), mRNA 212 1e-51
5gb|DQ436923.1| Pennisetum glaucum ramosa 3 (RA3) mRNA, partial cds 176 6e-41
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
7dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
8ref|XM_467838.1| Oryza sativa (japonica cultivar-group), mRNA 133 8e-28
9dbj|AK121015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 8e-28
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
11dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
12dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic D... 127 5e-26
13gb|DQ436920.1| Zea mays ramosa 3 (RA3) mRNA, complete cds 76 2e-10
14gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genom... 70 1e-08
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 70 1e-08
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 70 1e-08
17dbj|AK106316.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 1e-08
18gb|DQ436925.1| Setaria viridis ramosa 3 (RA3) mRNA, partial cds 68 4e-08
19gb|DQ436922.1| Avena strigosa sister of ramosa 3 (SRA) mRNA, par... 68 4e-08
20gb|AF140488.1|AF140488 Oryza sativa hypothetical protein mRNA, p... 68 4e-08
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
22dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
23gb|BT009639.1| Triticum aestivum clone wre1n.pk187.h5:fis, full ... 62 2e-06
24gb|DQ436926.1| Chasmanthium latifolium sister of ramosa 3 (SRA) ... 60 9e-06
25gb|DQ436921.1| Zea mays sister of ramosa 3 (SRA) mRNA, complete cds 60 9e-06
26gb|DQ436929.1| Hordeum vulgare sister of ramosa 3 (SRA) mRNA, pa... 50 0.009
27ref|XM_479204.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.14
28gb|DQ436924.1| Sorghum bicolor sister of ramosa 3 (SRA) mRNA, pa... 46 0.14
29dbj|AK109902.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
30emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chr... 46 0.14
31gb|DQ436927.1| Eragrostis tef sister of ramosa 3 (SRA) mRNA, par... 44 0.56
32gb|AE005679.1| Caulobacter crescentus CB15 section 5 of 359 of t... 44 0.56
33gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 44 0.56
34gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 44 0.56
35gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 42 2.2
36emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete ... 42 2.2
37gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell ... 42 2.2
38gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswel... 42 2.2
39ref|NM_140501.2| Drosophila melanogaster CG7011-RA (CG7011), mRNA 42 2.2
40gb|AY060788.1| Drosophila melanogaster GH25868 full length cDNA 42 2.2
41gb|CP000249.1| Frankia sp. CcI3, complete genome 42 2.2
42dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
43gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 2.2
44dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
45gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53... 42 2.2
46gb|BT018306.1| Zea mays clone EL01T0206G08.c mRNA sequence 40 8.8
47gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 8.8
48ref|NM_174215.2| Bos taurus ubiquinol-cytochrome c reductase (6.... 40 8.8
49emb|AL158217.25| Human DNA sequence from clone RP4-650H14 on chr... 40 8.8
50emb|BX015382.1|CNS08K16 Single read from an extremity of a full-... 40 8.8
51emb|BX009563.1|CNS08FJJ Single read from an extremity of a full-... 40 8.8
52emb|BX571861.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 40 8.8
53emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 8.8
54emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 40 8.8
55emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 40 8.8
56emb|AL669897.15| Mouse DNA sequence from clone RP23-78H4 on chro... 40 8.8
57gb|AF216667.4| Homo sapiens chromosome 8 clone CTC-543J1 map 8q2... 40 8.8
58gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 40 8.8
59dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 8.8
60gb|BC102080.1| Bos taurus ubiquinol-cytochrome c reductase (6.4k... 40 8.8
61gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 8.8
62dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 8.8
63gb|AC018540.13| Homo sapiens chromosome 8, clone RP11-399G1, com... 40 8.8
64dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 8.8
65dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
66dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.8
67dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 8.8
68dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 8.8
69ref|XM_316174.2| Anopheles gambiae str. PEST ENSANGP00000005913 ... 40 8.8
70ref|XM_556808.1| Anopheles gambiae str. PEST ENSANGP00000026467 ... 40 8.8
71ref|XM_313443.2| Anopheles gambiae str. PEST ENSANGP00000022425 ... 40 8.8
72ref|XM_313441.2| Anopheles gambiae str. PEST ENSANGP00000020229 ... 40 8.8
73ref|XM_313440.2| Anopheles gambiae str. PEST ENSANGP00000025242 ... 40 8.8
74ref|XM_308789.2| Anopheles gambiae str. PEST ENSANGP00000014972 ... 40 8.8
75dbj|AK107284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.8
76gb|AY109748.1| Zea mays CL426_1 mRNA sequence 40 8.8
77gb|BC107067.1| Homo sapiens MCF.2 cell line derived transforming... 40 8.8
78gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 8.8
79emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 8.8
80dbj|D55637.1| Bos taurus mRNA for smallest subunit of ubiquinol-... 40 8.8 
>gb|DQ436930.1| Phalaris canariensis ramosa 3 (RA3) mRNA, partial cds
          Length = 747

 Score =  400 bits (202), Expect = e-108
 Identities = 279/302 (92%), Gaps = 2/302 (0%)
 Strand = Plus / Minus

                                                                       
Query: 344 aggaactccatgacctcggcgggctcctgcagcgagaaggatgcgctggtgtccttgggg 403
           ||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 737 aggaactccatcacctccgcgggctcctgcagcgagaaggacgcgctggtctccttgggg 678

                                                                       
Query: 404 tgcttggagacgaggatcccgacgccctggcccctccgccgcagcaccttgaaggcgtcc 463
           ||||| || || |||||||| |||||||| |||| |||||||||||||||||| ||||||
Sbjct: 677 tgcttcgacaccaggatccccacgccctgcccccgccgccgcagcaccttgaaagcgtcc 618

                                                                       
Query: 464 tcgtcggtgcggtcgtcgcccgatgtagacgggcagcacgttgctgcagtcggcgaagcc 523
           |||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||
Sbjct: 617 tcgtcggtgcggtcgtcgcc-gatgtacacgggcaggacgttgctgcagtcggcgaagcc 559

                                                                       
Query: 524 cagcgactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccgcac 583
           ||||||||||||||  ||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 558 cagcgactcgagcaaaaactccagcgccttgcccttgtcccacttgatggtgggccgcac 499

                                                                       
Query: 584 ctcgaacaccatccgcccctgcgacatgcgcagctttcgggtactcccgcatcaccccct 643
           ||||||||||||||||||||||||||  |||||| |||||||||||||||| |||| |||
Sbjct: 498 ctcgaacaccatccgcccctgcgacagccgcagc-ttcgggtactcccgcaccaccgcct 440

             
Query: 644 tc 645
           ||
Sbjct: 439 tc 438
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>gb|DQ436928.1| Eragrostis tef ramosa 3 (RA3) mRNA, partial cds
          Length = 747

 Score =  392 bits (198), Expect = e-106
 Identities = 278/302 (92%), Gaps = 2/302 (0%)
 Strand = Plus / Minus

                                                                       
Query: 344 aggaactccatgacctcggcgggctcctgcagcgagaaggatgcgctggtgtccttgggg 403
           ||||||||||| |||||||||||||| || |||||| |||| ||||| || |||||||||
Sbjct: 737 aggaactccatcacctcggcgggctcttggagcgagtaggacgcgctcgtctccttgggg 678

                                                                       
Query: 404 tgcttggagacgaggatcccgacgccctggcccctccgccgcagcaccttgaaggcgtcc 463
           |||||||| || |||||||| ||||||||||| | ||||||||| |||||||||||||||
Sbjct: 677 tgcttggaaaccaggatccccacgccctggccgcgccgccgcaggaccttgaaggcgtcc 618

                                                                       
Query: 464 tcgtcggtgcggtcgtcgcccgatgtagacgggcagcacgttgctgcagtcggcgaagcc 523
           |||||||||||||||||||| |||||| || |||||||||||||||||||| ||||| ||
Sbjct: 617 tcgtcggtgcggtcgtcgcc-gatgtacaccggcagcacgttgctgcagtcagcgaaacc 559

                                                                       
Query: 524 cagcgactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccgcac 583
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 558 cagcgactcgagcaggaactcgagggccttgcccttatcccacttgatggtgggccgcac 499

                                                                       
Query: 584 ctcgaacaccatccgcccctgcgacatgcgcagctttcgggtactcccgcatcaccccct 643
           ||||||||||||||||||||||| ||  |||||| |||||||||||||||||||| ||||
Sbjct: 498 ctcgaacaccatccgcccctgcgtcagccgcagc-ttcgggtactcccgcatcacgccct 440

             
Query: 644 tc 645
           ||
Sbjct: 439 tc 438
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>ref|XM_482349.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1113

 Score =  295 bits (149), Expect = 9e-77
 Identities = 234/261 (89%), Gaps = 1/261 (0%)
 Strand = Plus / Minus

                                                                        
Query: 346  gaactccatgacctcggcgggctcctgcagcgagaaggatgcgctggtgtccttggggtg 405
            ||||||||| |||||||| ||||||||||| ||| |||| ||| ||||||||||||||| 
Sbjct: 1059 gaactccatcacctcggctggctcctgcagggagtaggaggcgttggtgtccttggggta 1000

                                                                        
Query: 406  cttggagacgaggatcccgacgccctggcccctccgccgcagcaccttgaaggcgtcctc 465
            |||||| |||||||| |||| ||||||||| |||   || ||||||||||| ||||||||
Sbjct: 999  cttggacacgaggatgccgatgccctggcctctcttgcggagcaccttgaacgcgtcctc 940

                                                                        
Query: 466  gtcggtgcggtcgtcgcccgatgtagacgggcagcacgttgctgcagtcggcgaagccca 525
            |||||| ||||||||||| |||||| || |||||||||||| ||||||||||||| || |
Sbjct: 939  gtcggtccggtcgtcgcc-gatgtacaccggcagcacgttggtgcagtcggcgaacccta 881

                                                                        
Query: 526  gcgactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccgcacct 585
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 880  gcgactcgaggaggaactcgagggccttgcccttgtcccacttgatggtgggccggatct 821

                                 
Query: 586  cgaacaccatccgcccctgcg 606
            |||||||||||| ||||||||
Sbjct: 820  cgaacaccatcctcccctgcg 800
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>ref|XM_450681.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1206

 Score =  212 bits (107), Expect = 1e-51
 Identities = 144/155 (92%), Gaps = 1/155 (0%)
 Strand = Plus / Minus

                                                                        
Query: 450  ccttgaaggcgtcctcgtcggtgcggtcgtcgcccgatgtagacgggcagcacgttgctg 509
            ||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| ||||
Sbjct: 1069 ccttgaacgcgtcctcgtccgtgcggtcgtcgcc-gatgtagaccggcagcacgtcgctg 1011

                                                                        
Query: 510  cagtcggcgaagcccagcgactcgagcaggaactcgagggccttgcccttgtcccacttg 569
            ||||||||||| || ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1010 cagtcggcgaaaccgagcgagtcgaggaggaactcgagggccttgcccttgtcccacttg 951

                                               
Query: 570  atggtgggccgcacctcgaacaccatccgcccctg 604
            ||||| |||||||||||||||||||||| ||||||
Sbjct: 950  atggtcggccgcacctcgaacaccatcctcccctg 916



 Score =  105 bits (53), Expect = 2e-19
 Identities = 95/109 (87%)
 Strand = Plus / Minus

                                                                        
Query: 323  ttccactcgacgaggcggaggaggaactccatgacctcggcgggctcctgcagcgagaag 382
            |||||||| ||||| || || | ||||||||| ||||||||||||||||| || ||||||
Sbjct: 1175 ttccactccacgagccgcagcaagaactccatcacctcggcgggctcctggagggagaag 1116

                                                             
Query: 383  gatgcgctggtgtccttggggtgcttggagacgaggatcccgacgccct 431
            || ||||| || ||||||||||||||||| || |||||||| |||||||
Sbjct: 1115 gaggcgctcgtctccttggggtgcttggacaccaggatccccacgccct 1067
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>gb|DQ436923.1| Pennisetum glaucum ramosa 3 (RA3) mRNA, partial cds
          Length = 723

 Score =  176 bits (89), Expect = 6e-41
 Identities = 195/229 (85%), Gaps = 1/229 (0%)
 Strand = Plus / Minus

                                                                       
Query: 344 aggaactccatgacctcggcgggctcctgcagcgagaaggatgcgctggtgtccttgggg 403
           |||||||||||||||||| | || |||||||| ||| |||| ||| | || |||||||||
Sbjct: 713 aggaactccatgacctcgcccgggtcctgcagggagtaggaggcgttcgtctccttgggg 654

                                                                       
Query: 404 tgcttggagacgaggatcccgacgccctggcccctccgccgcagcaccttgaaggcgtcc 463
             ||||||||||||||| |||| ||| || ||||||  || |||||||||||| ||||||
Sbjct: 653 cacttggagacgaggatgccgaggccttgacccctcttcctcagcaccttgaaagcgtcc 594

                                                                       
Query: 464 tcgtcggtgcggtcgtcgcccgatgtagacgggcagcacgttgctgcagtcggcgaagcc 523
           |||||||||||||||||  |||||||| || || || |||| |||||||| |||||| ||
Sbjct: 593 tcgtcggtgcggtcgtc-accgatgtacaccgggaggacgtcgctgcagttggcgaatcc 535

                                                            
Query: 524 cagcgactcgagcaggaactcgagggccttgcccttgtcccacttgatg 572
            ||||| |||||||| ||||| | ||||||||||||||||||| |||||
Sbjct: 534 gagcgattcgagcagaaactccaaggccttgcccttgtcccacatgatg 486
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  161 bits (81), Expect = 3e-36
 Identities = 145/165 (87%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                            
Query: 356      acctcggcgggctcctgcagcgagaaggatgcgctggtgtccttggggtgcttggagacg 415
                |||||||| ||||||||||| ||| |||| ||| ||||||||||||||| |||||| |||
Sbjct: 19573809 acctcggctggctcctgcagggagtaggaggcgttggtgtccttggggtacttggacacg 19573750

                                                                            
Query: 416      aggatcccgacgccctggcccctccgccgcagcaccttgaaggcgtcctcgtcggtgcgg 475
                ||||| |||| ||||||||| |||   || ||||||||||| |||||||||||||| |||
Sbjct: 19573749 aggatgccgatgccctggcctctcttgcggagcaccttgaacgcgtcctcgtcggtccgg 19573690

                                                             
Query: 476      tcgtcgcccgatgtagacgggcagcacgttgctgcagtcggcgaa 520
                |||||| |||||||| || |||||||||||| |||||||||||||
Sbjct: 19573689 tcgtcg-ccgatgtacaccggcagcacgttggtgcagtcggcgaa 19573646



 Score =  113 bits (57), Expect = 7e-22
 Identities = 66/69 (95%)
 Strand = Plus / Minus

                                                                            
Query: 525      agcgactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccgcacc 584
                ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 19573516 agcgactcgaggaggaactcgagggccttgcccttgtcccacttgatggtgggccggatc 19573457

                         
Query: 585      tcgaacacc 593
                |||||||||
Sbjct: 19573456 tcgaacacc 19573448
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>dbj|AP004658.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0042B03
          Length = 167669

 Score =  161 bits (81), Expect = 3e-36
 Identities = 145/165 (87%), Gaps = 1/165 (0%)
 Strand = Plus / Minus

                                                                         
Query: 356   acctcggcgggctcctgcagcgagaaggatgcgctggtgtccttggggtgcttggagacg 415
             |||||||| ||||||||||| ||| |||| ||| ||||||||||||||| |||||| |||
Sbjct: 49369 acctcggctggctcctgcagggagtaggaggcgttggtgtccttggggtacttggacacg 49310

                                                                         
Query: 416   aggatcccgacgccctggcccctccgccgcagcaccttgaaggcgtcctcgtcggtgcgg 475
             ||||| |||| ||||||||| |||   || ||||||||||| |||||||||||||| |||
Sbjct: 49309 aggatgccgatgccctggcctctcttgcggagcaccttgaacgcgtcctcgtcggtccgg 49250

                                                          
Query: 476   tcgtcgcccgatgtagacgggcagcacgttgctgcagtcggcgaa 520
             |||||| |||||||| || |||||||||||| |||||||||||||
Sbjct: 49249 tcgtcg-ccgatgtacaccggcagcacgttggtgcagtcggcgaa 49206



 Score =  113 bits (57), Expect = 7e-22
 Identities = 66/69 (95%)
 Strand = Plus / Minus

                                                                         
Query: 525   agcgactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccgcacc 584
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 49076 agcgactcgaggaggaactcgagggccttgcccttgtcccacttgatggtgggccggatc 49017

                      
Query: 585   tcgaacacc 593
             |||||||||
Sbjct: 49016 tcgaacacc 49008
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>ref|XM_467838.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1424

 Score =  133 bits (67), Expect = 8e-28
 Identities = 203/247 (82%), Gaps = 1/247 (0%)
 Strand = Plus / Minus

                                                                        
Query: 321  gcttccactcgacgaggcggaggaggaactccatgacctcggcgggctcctgcagcgaga 380
            |||||||||| || || | ||| | ||||||||| ||||| |  || ||||| || ||| 
Sbjct: 1178 gcttccactccaccagcctgagcaagaactccatcacctctgttgggtcctggagagagt 1119

                                                                        
Query: 381  aggatgcgctggtgtccttggggtgcttggagacgaggatcccgacgccctggcccctcc 440
            |||| ||| ||||||||||||||  ||||||||| ||||| || | |||||| || ||| 
Sbjct: 1118 aggaggcgttggtgtccttggggcacttggagactaggattcccaggccctgacctctct 1059

                                                                        
Query: 441  gccgcagcaccttgaaggcgtcctcgtcggtgcggtcgtcgcccgatgtagacgggcagc 500
              | || |||||||||||||||||||||||||||||||||  |||||||| || ||||  
Sbjct: 1058 ttctcaacaccttgaaggcgtcctcgtcggtgcggtcgtc-accgatgtacaccggcatg 1000

                                                                        
Query: 501  acgttgctgcagtcggcgaagcccagcgactcgagcaggaactcgagggccttgcccttg 560
            |||| || ||||| |||||| |||||||| || |||| |||||| || ||||||||||||
Sbjct: 999  acgtcgccgcagttggcgaatcccagcgattcaagcaagaactccagagccttgcccttg 940

                   
Query: 561  tcccact 567
            |||||||
Sbjct: 939  tcccact 933
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>dbj|AK121015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048F14, full
            insert sequence
          Length = 1425

 Score =  133 bits (67), Expect = 8e-28
 Identities = 203/247 (82%), Gaps = 1/247 (0%)
 Strand = Plus / Minus

                                                                        
Query: 321  gcttccactcgacgaggcggaggaggaactccatgacctcggcgggctcctgcagcgaga 380
            |||||||||| || || | ||| | ||||||||| ||||| |  || ||||| || ||| 
Sbjct: 1178 gcttccactccaccagcctgagcaagaactccatcacctctgttgggtcctggagagagt 1119

                                                                        
Query: 381  aggatgcgctggtgtccttggggtgcttggagacgaggatcccgacgccctggcccctcc 440
            |||| ||| ||||||||||||||  ||||||||| ||||| || | |||||| || ||| 
Sbjct: 1118 aggaggcgttggtgtccttggggcacttggagactaggattcccaggccctgacctctct 1059

                                                                        
Query: 441  gccgcagcaccttgaaggcgtcctcgtcggtgcggtcgtcgcccgatgtagacgggcagc 500
              | || |||||||||||||||||||||||||||||||||  |||||||| || ||||  
Sbjct: 1058 ttctcaacaccttgaaggcgtcctcgtcggtgcggtcgtc-accgatgtacaccggcatg 1000

                                                                        
Query: 501  acgttgctgcagtcggcgaagcccagcgactcgagcaggaactcgagggccttgcccttg 560
            |||| || ||||| |||||| |||||||| || |||| |||||| || ||||||||||||
Sbjct: 999  acgtcgccgcagttggcgaatcccagcgattcaagcaagaactccagagccttgcccttg 940

                   
Query: 561  tcccact 567
            |||||||
Sbjct: 939  tcccact 933
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  127 bits (64), Expect = 5e-26
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                            
Query: 525      agcgactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccgcacc 584
                ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 12199342 agcgagtcgaggaggaactcgagggccttgcccttgtcccacttgatggtcggccgcacc 12199283

                                    
Query: 585      tcgaacaccatccgcccctg 604
                ||||||||||||| ||||||
Sbjct: 12199282 tcgaacaccatcctcccctg 12199263



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 67/72 (93%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                            
Query: 449      accttgaaggcgtcctcgtcggtgcggtcgtcgcccgatgtagacgggcagcacgttgct 508
                |||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| |||
Sbjct: 12199496 accttgaacgcgtcctcgtccgtgcggtcgtcgcc-gatgtagaccggcagcacgtcgct 12199438

                            
Query: 509      gcagtcggcgaa 520
                ||||||||||||
Sbjct: 12199437 gcagtcggcgaa 12199426



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                            
Query: 356      acctcggcgggctcctgcagcgagaaggatgcgctggtgtccttggggtgcttggagacg 415
                ||||||||||||||||| || |||||||| ||||| || ||||||||||||||||| || 
Sbjct: 12199803 acctcggcgggctcctggagggagaaggaggcgctcgtctccttggggtgcttggacacc 12199744

                                               
Query: 416      aggatcccgacgccctggcccctccgccgca 446
                |||||||| |||||||| || | ||||||||
Sbjct: 12199743 aggatccccacgccctgcccacgccgccgca 12199713
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>dbj|AP005580.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1759_F09
          Length = 149501

 Score =  127 bits (64), Expect = 5e-26
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                          
Query: 525    agcgactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccgcacc 584
              ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 110801 agcgagtcgaggaggaactcgagggccttgcccttgtcccacttgatggtcggccgcacc 110742

                                  
Query: 585    tcgaacaccatccgcccctg 604
              ||||||||||||| ||||||
Sbjct: 110741 tcgaacaccatcctcccctg 110722



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 67/72 (93%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                          
Query: 449    accttgaaggcgtcctcgtcggtgcggtcgtcgcccgatgtagacgggcagcacgttgct 508
              |||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| |||
Sbjct: 110955 accttgaacgcgtcctcgtccgtgcggtcgtcgcc-gatgtagaccggcagcacgtcgct 110897

                          
Query: 509    gcagtcggcgaa 520
              ||||||||||||
Sbjct: 110896 gcagtcggcgaa 110885



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                          
Query: 356    acctcggcgggctcctgcagcgagaaggatgcgctggtgtccttggggtgcttggagacg 415
              ||||||||||||||||| || |||||||| ||||| || ||||||||||||||||| || 
Sbjct: 111262 acctcggcgggctcctggagggagaaggaggcgctcgtctccttggggtgcttggacacc 111203

                                             
Query: 416    aggatcccgacgccctggcccctccgccgca 446
              |||||||| |||||||| || | ||||||||
Sbjct: 111202 aggatccccacgccctgcccacgccgccgca 111172
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>dbj|AP005525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0564H06
          Length = 146823

 Score =  127 bits (64), Expect = 5e-26
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                          
Query: 525    agcgactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccgcacc 584
              ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 133721 agcgagtcgaggaggaactcgagggccttgcccttgtcccacttgatggtcggccgcacc 133662

                                  
Query: 585    tcgaacaccatccgcccctg 604
              ||||||||||||| ||||||
Sbjct: 133661 tcgaacaccatcctcccctg 133642



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 67/72 (93%), Gaps = 1/72 (1%)
 Strand = Plus / Minus

                                                                          
Query: 449    accttgaaggcgtcctcgtcggtgcggtcgtcgcccgatgtagacgggcagcacgttgct 508
              |||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||| |||
Sbjct: 133875 accttgaacgcgtcctcgtccgtgcggtcgtcgcc-gatgtagaccggcagcacgtcgct 133817

                          
Query: 509    gcagtcggcgaa 520
              ||||||||||||
Sbjct: 133816 gcagtcggcgaa 133805



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 80/91 (87%)
 Strand = Plus / Minus

                                                                          
Query: 356    acctcggcgggctcctgcagcgagaaggatgcgctggtgtccttggggtgcttggagacg 415
              ||||||||||||||||| || |||||||| ||||| || ||||||||||||||||| || 
Sbjct: 134182 acctcggcgggctcctggagggagaaggaggcgctcgtctccttggggtgcttggacacc 134123

                                             
Query: 416    aggatcccgacgccctggcccctccgccgca 446
              |||||||| |||||||| || | ||||||||
Sbjct: 134122 aggatccccacgccctgcccacgccgccgca 134092
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>gb|DQ436920.1| Zea mays ramosa 3 (RA3) mRNA, complete cds
          Length = 1086

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 44/46 (95%)
 Strand = Plus / Minus

                                                         
Query: 528 gactcgagcaggaactcgagggccttgcccttgtcccacttgatgg 573
           |||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 863 gacttgagcaagaactcgagggccttgcccttgtcccacttgatgg 818



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 446 agcaccttgaaggcgtcctcgtcggtgcg 474
           ||||||||||| ||||||||||| |||||
Sbjct: 944 agcaccttgaaagcgtcctcgtcagtgcg 916
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>gb|AC103551.7| Oryza sativa chromosome 3 BAC OSJNBb0058G04 genomic sequence, complete
              sequence
          Length = 137709

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 123/151 (81%), Gaps = 1/151 (0%)
 Strand = Plus / Plus

                                                                          
Query: 342    ggaggaactccatgacctcggcgggctcctgcagcgagaaggatgcgctggtgtccttgg 401
              ||||||| ||| |||||||| |||| ||  | || |||||||| |||| |||||||||||
Sbjct: 115360 ggaggaagtccttgacctcgccggggtcgcggagggagaaggaggcgcaggtgtccttgg 115419

                                                                          
Query: 402    ggtgcttggagacgaggatcccgacgccctggcccctccgccgcagcaccttgaaggcgt 461
              ||  | | || || ||||| ||| |||| || ||||||   || ||||||  ||| ||||
Sbjct: 115420 ggaacctcgacaccaggatgccggcgccgtgccccctcgctcggagcacccggaacgcgt 115479

                                             
Query: 462    cctcgtcggtgcggtcgtcgcccgatgtaga 492
              |||||||||||||||||||| ||||||||||
Sbjct: 115480 cctcgtcggtgcggtcgtcg-ccgatgtaga 115509



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                          
Query: 545    gagggccttgcccttgtcccacttgatggtgggccgcacctcgaacaccatccgcccctg 604
              |||||||| |||||||||||||||||||| |||||  ||||||| |||| | || |||||
Sbjct: 115589 gagggcctcgcccttgtcccacttgatggcgggcctgacctcgagcaccttgcggccctg 115648

                
Query: 605    cg 606
              ||
Sbjct: 115649 cg 115650
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 123/151 (81%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                            
Query: 342      ggaggaactccatgacctcggcgggctcctgcagcgagaaggatgcgctggtgtccttgg 401
                ||||||| ||| |||||||| |||| ||  | || |||||||| |||| |||||||||||
Sbjct: 15221988 ggaggaagtccttgacctcgccggggtcgcggagggagaaggaggcgcaggtgtccttgg 15221929

                                                                            
Query: 402      ggtgcttggagacgaggatcccgacgccctggcccctccgccgcagcaccttgaaggcgt 461
                ||  | | || || ||||| ||| |||| || ||||||   || ||||||  ||| ||||
Sbjct: 15221928 ggaacctcgacaccaggatgccggcgccgtgccccctcgctcggagcacccggaacgcgt 15221869

                                               
Query: 462      cctcgtcggtgcggtcgtcgcccgatgtaga 492
                |||||||||||||||||||| ||||||||||
Sbjct: 15221868 cctcgtcggtgcggtcgtcg-ccgatgtaga 15221839



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 545      gagggccttgcccttgtcccacttgatggtgggccgcacctcgaacaccatccgcccctg 604
                |||||||| |||||||||||||||||||| |||||  ||||||| |||| | || |||||
Sbjct: 15221759 gagggcctcgcccttgtcccacttgatggcgggcctgacctcgagcaccttgcggccctg 15221700

                  
Query: 605      cg 606
                ||
Sbjct: 15221699 cg 15221698
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 123/151 (81%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                            
Query: 342      ggaggaactccatgacctcggcgggctcctgcagcgagaaggatgcgctggtgtccttgg 401
                ||||||| ||| |||||||| |||| ||  | || |||||||| |||| |||||||||||
Sbjct: 15216522 ggaggaagtccttgacctcgccggggtcgcggagggagaaggaggcgcaggtgtccttgg 15216463

                                                                            
Query: 402      ggtgcttggagacgaggatcccgacgccctggcccctccgccgcagcaccttgaaggcgt 461
                ||  | | || || ||||| ||| |||| || ||||||   || ||||||  ||| ||||
Sbjct: 15216462 ggaacctcgacaccaggatgccggcgccgtgccccctcgctcggagcacccggaacgcgt 15216403

                                               
Query: 462      cctcgtcggtgcggtcgtcgcccgatgtaga 492
                |||||||||||||||||||| ||||||||||
Sbjct: 15216402 cctcgtcggtgcggtcgtcg-ccgatgtaga 15216373



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                            
Query: 545      gagggccttgcccttgtcccacttgatggtgggccgcacctcgaacaccatccgcccctg 604
                |||||||| |||||||||||||||||||| |||||  ||||||| |||| | || |||||
Sbjct: 15216293 gagggcctcgcccttgtcccacttgatggcgggcctgacctcgagcaccttgcggccctg 15216234

                  
Query: 605      cg 606
                ||
Sbjct: 15216233 cg 15216232
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>dbj|AK106316.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E01, full
            insert sequence
          Length = 1513

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 123/151 (81%), Gaps = 1/151 (0%)
 Strand = Plus / Minus

                                                                        
Query: 342  ggaggaactccatgacctcggcgggctcctgcagcgagaaggatgcgctggtgtccttgg 401
            ||||||| ||| |||||||| |||| ||  | || |||||||| |||| |||||||||||
Sbjct: 1042 ggaggaagtccttgacctcgccggggtcgcggagggagaaggaggcgcaggtgtccttgg 983

                                                                        
Query: 402  ggtgcttggagacgaggatcccgacgccctggcccctccgccgcagcaccttgaaggcgt 461
            ||  | | || || ||||| ||| |||| || ||||||   || ||||||  ||| ||||
Sbjct: 982  ggaacctcgacaccaggatgccggcgccgtgccccctcgctcggagcacccggaacgcgt 923

                                           
Query: 462  cctcgtcggtgcggtcgtcgcccgatgtaga 492
            |||||||||||||||||||| ||||||||||
Sbjct: 922  cctcgtcggtgcggtcgtcg-ccgatgtaga 893



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                       
Query: 545 gagggccttgcccttgtcccacttgatggtgggccgcacctcgaacaccatccgcccctg 604
           |||||||| |||||||||||||||||||| |||||  ||||||| |||| | || |||||
Sbjct: 813 gagggcctcgcccttgtcccacttgatggcgggcctgacctcgagcaccttgcggccctg 754

             
Query: 605 cg 606
           ||
Sbjct: 753 cg 752
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>gb|DQ436925.1| Setaria viridis ramosa 3 (RA3) mRNA, partial cds
          Length = 1020

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 528 gactcgagcaggaactcgagggccttgcccttgtcccacttgatgg 573
           |||| |||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 860 gacttgagcagaaactcaagggccttgcccttgtcccacttgatgg 815



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 395 tccttggggtgcttggagacgaggatcccgacgccctggcccctccgccgcagcaccttg 454
           |||||||||  |||||| || ||||| |||| |||||| ||| | |  ||||||||||||
Sbjct: 992 tccttggggaacttggacaccaggattccgatgccctgccccatgccgcgcagcaccttg 933

                               
Query: 455 aaggcgtcctcgtcggtgcg 474
           ||||| ||||||||||||||
Sbjct: 932 aaggcatcctcgtcggtgcg 913
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>gb|DQ436922.1| Avena strigosa sister of ramosa 3 (SRA) mRNA, partial cds
          Length = 753

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                         
Query: 528 gactcgagcaggaactcgagggccttgcccttgtcccacttgatgg 573
           |||||||||| |||||| ||||| ||||||||||||||||||||||
Sbjct: 620 gactcgagcaagaactctagggcgttgcccttgtcccacttgatgg 575



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 443 cgcagcaccttgaaggcgtcctcgtcggtgcggtc 477
           |||||||||||||| || |||||||||||||||||
Sbjct: 704 cgcagcaccttgaacgcatcctcgtcggtgcggtc 670
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>gb|AF140488.1|AF140488 Oryza sativa hypothetical protein mRNA, partial cds
          Length = 279

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 495 ggcagcacgttgctgcagtcggcgaagcccagcgactcgagcaggaactcgagggccttg 554
           ||||| |||| || ||||| |||||| |||||||| || |||| |||||| || ||||||
Sbjct: 274 ggcaggacgtcgccgcagttggcgaatcccagcgattcaagcaagaactccagagccttg 215

                         
Query: 555 cccttgtcccactt 568
           ||||||||||||||
Sbjct: 214 cccttgtcccactt 201
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                                
Query: 449      accttgaaggcgtcctcgtcggtgcggtcgtc 480
                ||||||||||||||||||||||||||||||||
Sbjct: 31683664 accttgaaggcgtcctcgtcggtgcggtcgtc 31683633



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                              
Query: 522      cccagcgactcgagcaggaactcgagggccttgcccttgtcccact 567
                |||||||| || |||| |||||| || |||||||||||||||||||
Sbjct: 31683392 cccagcgattcaagcaagaactccagagccttgcccttgtcccact 31683347



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                     
Query: 368      tcctgcagcgagaaggatgcgctggtgtccttggggtgcttggagacgaggat 420
                ||||| || ||| |||| ||| ||||||||||||||  ||||||||| |||||
Sbjct: 31683908 tcctggagagagtaggaggcgttggtgtccttggggcacttggagactaggat 31683856



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 364      gggctcctgcagcgagaagg 383
                ||||||||||||||||||||
Sbjct: 31351185 gggctcctgcagcgagaagg 31351204
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>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1288_G09
          Length = 109672

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                             
Query: 449   accttgaaggcgtcctcgtcggtgcggtcgtc 480
             ||||||||||||||||||||||||||||||||
Sbjct: 63451 accttgaaggcgtcctcgtcggtgcggtcgtc 63420



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 522   cccagcgactcgagcaggaactcgagggccttgcccttgtcccact 567
             |||||||| || |||| |||||| || |||||||||||||||||||
Sbjct: 63179 cccagcgattcaagcaagaactccagagccttgcccttgtcccact 63134



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                  
Query: 368   tcctgcagcgagaaggatgcgctggtgtccttggggtgcttggagacgaggat 420
             ||||| || ||| |||| ||| ||||||||||||||  ||||||||| |||||
Sbjct: 63695 tcctggagagagtaggaggcgttggtgtccttggggcacttggagactaggat 63643
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>gb|BT009639.1| Triticum aestivum clone wre1n.pk187.h5:fis, full insert mRNA
           sequence
          Length = 931

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 44/47 (93%), Gaps = 1/47 (2%)
 Strand = Plus / Minus

                                                          
Query: 446 agcaccttgaaggcgtcctcgtcggtgcggtcgtcgcccgatgtaga 492
           ||||||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct: 550 agcaccttgaacgcgtcttcgtcggtgcggtcgtcg-ccgatgtaga 505



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 525 agcgactcgagcaggaactcgagggccttgcccttgtccca 565
           |||||||  ||||||||||||| |||||| |||||||||||
Sbjct: 472 agcgactgaagcaggaactcgacggccttccccttgtccca 432
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>gb|DQ436926.1| Chasmanthium latifolium sister of ramosa 3 (SRA) mRNA, partial cds
          Length = 744

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 443 cgcagcaccttgaaggcgtcctcgtcggtgcggtcgtc 480
           |||||||||||||| || ||||||||||||||||||||
Sbjct: 635 cgcagcaccttgaacgcatcctcgtcggtgcggtcgtc 598



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 534 agcaggaactcgagggccttgcccttgtcccacttgatgg 573
           |||| |||||||||||| || |||||||||||||||||||
Sbjct: 545 agcaagaactcgagggcgttccccttgtcccacttgatgg 506
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>gb|DQ436921.1| Zea mays sister of ramosa 3 (SRA) mRNA, complete cds
          Length = 1068

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                         
Query: 528 gactcgagcaggaactcgagggccttgcccttgtcccacttgatgg 573
           |||||||||| |||||  ||||| ||||||||||||||||||||||
Sbjct: 839 gactcgagcaagaactgcagggcgttgcccttgtcccacttgatgg 794



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                          
Query: 443 cgcagcaccttgaaggcgtcctcgtcggtgc 473
           ||||| |||||||| ||||||||||||||||
Sbjct: 923 cgcaggaccttgaacgcgtcctcgtcggtgc 893
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>gb|DQ436929.1| Hordeum vulgare sister of ramosa 3 (SRA) mRNA, partial cds
          Length = 741

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 528 gactcgagcaggaactcgagggccttgcccttgtcccacttgatggtgggccg 580
           ||||| |||| || ||||||||| || ||||| ||||||||||||| ||||||
Sbjct: 548 gactcaagcaagagctcgagggcgtttcccttatcccacttgatggagggccg 496



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 443 cgcagcaccttgaaggcgtcctcgtcggtgcggtc 477
           |||||||||||||| || |||||||| ||||||||
Sbjct: 632 cgcagcaccttgaatgcatcctcgtctgtgcggtc 598
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>ref|XM_479204.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1517

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 443  cgcagcaccttgaaggcgtcctcgtcggtgcggtc 477
            |||| ||||||||| || |||||||||||||||||
Sbjct: 1085 cgcaacaccttgaaagcatcctcgtcggtgcggtc 1051
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>gb|DQ436924.1| Sorghum bicolor sister of ramosa 3 (SRA) mRNA, partial cds
          Length = 744

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 105/131 (80%), Gaps = 1/131 (0%)
 Strand = Plus / Minus

                                                                       
Query: 443 cgcagcaccttgaaggcgtcctcgtcggtgcggtcgtcgcccgatgtagacgggcagcac 502
           |||||||||||||| |||||||| || ||||| |||||  ||||| || |  || | |||
Sbjct: 635 cgcagcaccttgaacgcgtcctcatccgtgcgatcgtc-tccgatatatatcgggaacac 577

                                                                       
Query: 503 gttgctgcagtcggcgaagcccagcgactcgagcaggaactcgagggccttgcccttgtc 562
            ||| | | ||| ||||| || || ||||| |||| |||||  ||||| |||||||||||
Sbjct: 576 attgttactgtcagcgaaaccgagggactcaagcaagaactgtagggcgttgcccttgtc 517

                      
Query: 563 ccacttgatgg 573
           ||||| |||||
Sbjct: 516 ccactcgatgg 506
to top
>dbj|AK109902.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-F10, full
            insert sequence
          Length = 1517

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 443  cgcagcaccttgaaggcgtcctcgtcggtgcggtc 477
            |||| ||||||||| || |||||||||||||||||
Sbjct: 1085 cgcaacaccttgaaagcatcctcgtcggtgcggtc 1051
to top
>emb|CT009569.17| Pig DNA sequence from clone CH242-213C10 on chromosome 17, complete
             sequence
          Length = 201723

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 388   gctggtgtccttggggtgcttgg 410
             |||||||||||||||||||||||
Sbjct: 40695 gctggtgtccttggggtgcttgg 40717
to top
>gb|DQ436927.1| Eragrostis tef sister of ramosa 3 (SRA) mRNA, partial cds
          Length = 738

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 528 gactcgagcaggaactcgagggccttgcccttgtcccacttgatgg 573
           ||||| |||| |||||| ||||| || || ||||||||||||||||
Sbjct: 545 gactccagcaagaactccagggcatttcctttgtcccacttgatgg 500
to top
>gb|AE005679.1| Caulobacter crescentus CB15 section 5 of 359 of the complete genome
          Length = 12370

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 445   cagcaccttgaaggcgtcctcg 466
             ||||||||||||||||||||||
Sbjct: 10795 cagcaccttgaaggcgtcctcg 10816
to top
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 454     gaaggcgtcctcgtcggtgcggtcgtcgcc 483
               ||||||||||||||||||  ||||||||||
Sbjct: 2965631 gaaggcgtcctcgtcggtcaggtcgtcgcc 2965602
to top
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 461     tcctcgtcggtgcggtcgtcgc 482
               ||||||||||||||||||||||
Sbjct: 2161764 tcctcgtcggtgcggtcgtcgc 2161743
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 455    aaggcgtcctcgtcggtgcggtcgtcgcc 483
              ||||||||||||||||||  |||||||||
Sbjct: 269924 aaggcgtcctcgtcggtgacgtcgtcgcc 269952
to top
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29
          Length = 290850

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 457    ggcgtcctcgtcggtgcggtcgtcg 481
              ||||||||||||||||||| |||||
Sbjct: 218223 ggcgtcctcgtcggtgcgggcgtcg 218199
to top
>gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194979

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 450    ccttgaaggcgtcctcgtcggtgcg 474
              |||||||||||||||||||| ||||
Sbjct: 180563 ccttgaaggcgtcctcgtcgctgcg 180587
to top
>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 172540

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 450   ccttgaaggcgtcctcgtcggtgcg 474
             |||||||||||||||||||| ||||
Sbjct: 75982 ccttgaaggcgtcctcgtcgctgcg 75958
to top
>ref|NM_140501.2| Drosophila melanogaster CG7011-RA (CG7011), mRNA
          Length = 1346

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 450 ccttgaaggcgtcctcgtcggtgcg 474
           |||||||||||||||||||| ||||
Sbjct: 691 ccttgaaggcgtcctcgtcgctgcg 667
to top
>gb|AY060788.1| Drosophila melanogaster GH25868 full length cDNA
          Length = 1330

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 450 ccttgaaggcgtcctcgtcggtgcg 474
           |||||||||||||||||||| ||||
Sbjct: 664 ccttgaaggcgtcctcgtcgctgcg 640
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 459     cgtcctcgtcggtgcggtcgt 479
               |||||||||||||||||||||
Sbjct: 1488952 cgtcctcgtcggtgcggtcgt 1488972
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 449      accttgaaggcgtcctcgtcggtgcggtc 477
                |||||||| || |||||||||||||||||
Sbjct: 25816649 accttgaaagcatcctcgtcggtgcggtc 25816621
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 460    gtcctcgtcggtgcggtcgtc 480
              |||||||||||||||||||||
Sbjct: 533566 gtcctcgtcggtgcggtcgtc 533546



 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 458     gcgtcctcgtcggtgcggtcgtcgcccg 485
               |||||||||||||||  |||||||||||
Sbjct: 1261929 gcgtcctcgtcggtgacgtcgtcgcccg 1261902
to top
>dbj|AP004341.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0524E08
          Length = 154696

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 449    accttgaaggcgtcctcgtcggtgcggtc 477
              |||||||| || |||||||||||||||||
Sbjct: 133811 accttgaaagcatcctcgtcggtgcggtc 133783
to top
>gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53 of 83 of the complete
              sequence
          Length = 295875

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 450    ccttgaaggcgtcctcgtcggtgcg 474
              |||||||||||||||||||| ||||
Sbjct: 241116 ccttgaaggcgtcctcgtcgctgcg 241140
to top
>gb|BT018306.1| Zea mays clone EL01T0206G08.c mRNA sequence
          Length = 992

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 534 agcaggaactcgagggccttgcccttgtccca 565
           |||||||||||||  ||||| |||||||||||
Sbjct: 474 agcaggaactcgacagcctttcccttgtccca 443
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 517    cgaagcccagcgactcgagcagga 540
              ||||||||||||| ||||||||||
Sbjct: 718888 cgaagcccagcgagtcgagcagga 718865
to top
>ref|NM_174215.2| Bos taurus ubiquinol-cytochrome c reductase (6.4kD) subunit (UQCR),
           mRNA
          Length = 358

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 gccccacaggctcgccgtgg 142
           ||||||||||||||||||||
Sbjct: 92  gccccacaggctcgccgtgg 73
to top
>emb|AL158217.25| Human DNA sequence from clone RP4-650H14 on chromosome 1p36.23-36.33
            Contains the 3' end of the ESPN gene for espin, the
            TNFRSF25 gene for tumor necrosis factor receptor
            superfamily member 25, the gene for a novel PH
            domain-containing protein and four CpG islands, complete
            sequence
          Length = 53983

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 421  cccgacgccctggcccctccgccgcagc 448
            ||||| |||||||||||| |||||||||
Sbjct: 5155 cccgaggccctggcccctgcgccgcagc 5182
to top
>emb|BX015382.1|CNS08K16 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA23AE03 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 1011

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 137 ccgtggtacggttccttctt 156
           ||||||||||||||||||||
Sbjct: 239 ccgtggtacggttccttctt 220
to top
>emb|BX009563.1|CNS08FJJ Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA15BH10 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 365

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 137 ccgtggtacggttccttctt 156
           ||||||||||||||||||||
Sbjct: 179 ccgtggtacggttccttctt 160
to top
>emb|BX571861.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              3/17
          Length = 342905

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    tgtcgccgcagcctgaggcg 306
              ||||||||||||||||||||
Sbjct: 267154 tgtcgccgcagcctgaggcg 267135
to top
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     aagctacgcgtagtgaatta 238
               ||||||||||||||||||||
Sbjct: 1653435 aagctacgcgtagtgaatta 1653416
to top
>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    tgggccgcacctcgaacacc 593
              ||||||||||||||||||||
Sbjct: 103535 tgggccgcacctcgaacacc 103554
to top
>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 574   tgggccgcacctcgaacacc 593
             ||||||||||||||||||||
Sbjct: 74539 tgggccgcacctcgaacacc 74520
to top
>emb|AL669897.15| Mouse DNA sequence from clone RP23-78H4 on chromosome 11 Contains the
             Ywhae gene for tyrosine 3-monooxygenase/tryptophan
             5-monooxygenase activation protein epsilon polypeptide,
             the Doc2b gene for double C2 beta, a novl gene, the 3' end
             of the gene for a novel protein similar to rat
             rabphilin-3a related protein and two CpG islands, complete
             sequence
          Length = 178980

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 536   caggaactcgagggccttgccctt 559
             ||||| ||||||||||||||||||
Sbjct: 77275 caggatctcgagggccttgccctt 77298
to top
>gb|AF216667.4| Homo sapiens chromosome 8 clone CTC-543J1 map 8q24.3, complete sequence
          Length = 178780

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 548   ggccttgcccttgtcccact 567
             ||||||||||||||||||||
Sbjct: 32055 ggccttgcccttgtcccact 32074
to top
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 428     ccctggcccctccgccgcagcacc 451
               |||||||||||| |||||||||||
Sbjct: 2162972 ccctggcccctctgccgcagcacc 2162995
to top
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     aagctacgcgtagtgaatta 238
               ||||||||||||||||||||
Sbjct: 1704543 aagctacgcgtagtgaatta 1704524
to top
>gb|BC102080.1| Bos taurus ubiquinol-cytochrome c reductase (6.4kD) subunit, mRNA
           (cDNA clone MGC:127112 IMAGE:7943703), complete cds
          Length = 428

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 gccccacaggctcgccgtgg 142
           ||||||||||||||||||||
Sbjct: 118 gccccacaggctcgccgtgg 99
to top
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     gagaaggatgcgctggtgtc 396
               ||||||||||||||||||||
Sbjct: 1953553 gagaaggatgcgctggtgtc 1953534
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 514     cggcgaagcccagcgactcg 533
               ||||||||||||||||||||
Sbjct: 7968468 cggcgaagcccagcgactcg 7968449
to top
>gb|AC018540.13| Homo sapiens chromosome 8, clone RP11-399G1, complete sequence
          Length = 179614

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 548   ggccttgcccttgtcccact 567
             ||||||||||||||||||||
Sbjct: 21863 ggccttgcccttgtcccact 21844
to top
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     aagctacgcgtagtgaatta 238
               ||||||||||||||||||||
Sbjct: 1673783 aagctacgcgtagtgaatta 1673764
to top
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0024K03
          Length = 119796

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   gggctcctgcagcgagaagg 383
             ||||||||||||||||||||
Sbjct: 33759 gggctcctgcagcgagaagg 33778
to top
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1118_G04
          Length = 134464

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 364    gggctcctgcagcgagaagg 383
              ||||||||||||||||||||
Sbjct: 121053 gggctcctgcagcgagaagg 121072
to top
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     aagctacgcgtagtgaatta 238
               ||||||||||||||||||||
Sbjct: 1628132 aagctacgcgtagtgaatta 1628113
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 454    gaaggcgtcctcgtcggtgc 473
              ||||||||||||||||||||
Sbjct: 782673 gaaggcgtcctcgtcggtgc 782692
to top
>ref|XM_316174.2| Anopheles gambiae str. PEST ENSANGP00000005913
           (ENSANGG00000004501), partial mRNA
          Length = 2649

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 459 cgtcctcgtcggtgcggtcg 478
           ||||||||||||||||||||
Sbjct: 588 cgtcctcgtcggtgcggtcg 607
to top
>ref|XM_556808.1| Anopheles gambiae str. PEST ENSANGP00000026467 (ENSANGG00000004501),
            partial mRNA
          Length = 3579

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 459  cgtcctcgtcggtgcggtcg 478
            ||||||||||||||||||||
Sbjct: 1107 cgtcctcgtcggtgcggtcg 1126
to top
>ref|XM_313443.2| Anopheles gambiae str. PEST ENSANGP00000022425 (ENSANGG00000017740),
            partial mRNA
          Length = 2487

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  ccgtggtacggttccttctt 156
            ||||||||||||||||||||
Sbjct: 1046 ccgtggtacggttccttctt 1027
to top
>ref|XM_313441.2| Anopheles gambiae str. PEST ENSANGP00000020229 (ENSANGG00000017740),
            partial mRNA
          Length = 4690

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 137  ccgtggtacggttccttctt 156
            ||||||||||||||||||||
Sbjct: 1046 ccgtggtacggttccttctt 1027
to top
>ref|XM_313440.2| Anopheles gambiae str. PEST ENSANGP00000025242
           (ENSANGG00000017740), mRNA
          Length = 1732

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 137 ccgtggtacggttccttctt 156
           ||||||||||||||||||||
Sbjct: 291 ccgtggtacggttccttctt 272
to top
>ref|XM_308789.2| Anopheles gambiae str. PEST ENSANGP00000014972
           (ENSANGG00000012483), partial mRNA
          Length = 2430

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 459 cgtcctcgtcggtgcggtcg 478
           ||||||||||||||||||||
Sbjct: 498 cgtcctcgtcggtgcggtcg 517
to top
>dbj|AK107284.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-B04, full
           insert sequence
          Length = 1869

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 328 ctcgacgaggcggaggaggaactc 351
           |||||||| |||||||||||||||
Sbjct: 209 ctcgacgaagcggaggaggaactc 186
to top
>gb|AY109748.1| Zea mays CL426_1 mRNA sequence
          Length = 1620

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 534  agcaggaactcgagggccttgcccttgtccca 565
            |||||||||||||  ||||| |||||||||||
Sbjct: 1123 agcaggaactcgacagcctttcccttgtccca 1092
to top
>gb|BC107067.1| Homo sapiens MCF.2 cell line derived transforming sequence-like,
           mRNA (cDNA clone IMAGE:40007827), partial cds
          Length = 1883

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 328 ctcgacgaggcggaggagga 347
           ||||||||||||||||||||
Sbjct: 3   ctcgacgaggcggaggagga 22
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 556    ccttgtcccacttgatggtg 575
              ||||||||||||||||||||
Sbjct: 810304 ccttgtcccacttgatggtg 810285
to top
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     aagctacgcgtagtgaatta 238
               ||||||||||||||||||||
Sbjct: 1583286 aagctacgcgtagtgaatta 1583267
to top
>dbj|D55637.1| Bos taurus mRNA for smallest subunit of ubiquinol-cytochrome c
           reductase, complete cds
          Length = 358

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 123 gccccacaggctcgccgtgg 142
           ||||||||||||||||||||
Sbjct: 92  gccccacaggctcgccgtgg 73


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,273,607
Number of Sequences: 3902068
Number of extensions: 4273607
Number of successful extensions: 79250
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77787
Number of HSP's gapped (non-prelim): 1443
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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