ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATKA_PSEPK (Q88FD7) Potassium-transporting ATPase A chain (EC 3.... 31 4.0
2Y396_HELPJ (Q9ZKF3) Hypothetical protein jhp_0985 30 5.2
3PA2GX_HUMAN (O15496) Group 10 secretory phospholipase A2 precurs... 30 8.8

>ATKA_PSEPK (Q88FD7) Potassium-transporting ATPase A chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase A chain) (ATP
           phosphohydrolase [potassium-transporting] A chain)
           (Potassium-binding and translocating subunit A)
          Length = 564

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = -3

Query: 542 TAAAMVWDIYT--AEDKLEAAVRDSVNALT---AVVNLEVGEIVTTAVEAGFVAL 393
           T  +++W + T  A +    A+ DS+N LT   A+VN+ VGE++   V AG   +
Sbjct: 333 TTGSVLWAVTTTAASNGSVNAMHDSLNPLTGMVAMVNMMVGEVIFGGVGAGLYGM 387



to top

>Y396_HELPJ (Q9ZKF3) Hypothetical protein jhp_0985|
          Length = 616

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 628 LLRKRDKE-NLW*LTHLKLWEKSG 560
           L+ K+DKE NLW L  LK WEK G
Sbjct: 129 LITKQDKEVNLWDLPVLKTWEKDG 152



to top

>PA2GX_HUMAN (O15496) Group 10 secretory phospholipase A2 precursor (EC 3.1.1.4)|
           (Group X secretory phospholipase A2)
           (Phosphatidylcholine 2-acylhydrolase GX) (GX sPLA2)
           (sPLA2-X)
          Length = 155

 Score = 29.6 bits (65), Expect = 8.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 381 CFCGCHGNWRSRRFWNWCAHWDSC 310
           CFCG  G+ + R   +WC H   C
Sbjct: 57  CFCGLGGHGQPRDAIDWCCHGHDC 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,170,405
Number of Sequences: 219361
Number of extensions: 966774
Number of successful extensions: 2577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2576
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6655306086
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top