Clone Information

BLAST Search Result

Clone Name	rbags14g19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AC108763.2\| Oryza sativa (japonica cultivar-group) chromosome...	168	2e-38
2	dbj\|AK099796.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	2e-38
3	dbj\|AK100624.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	2e-38
4	dbj\|AK062108.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	168	2e-38
5	ref\|XM_450769.1\| Oryza sativa (japonica cultivar-group), mRNA	123	8e-25
6	dbj\|AP008215.1\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
7	dbj\|AP005838.3\| Oryza sativa (japonica cultivar-group) genomic D...	123	8e-25
8	dbj\|AK068860.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	123	8e-25
9	emb\|AL935122.10\| Zebrafish DNA sequence from clone CH211-197C14 ...	48	0.038
10	gb\|AC147021.3\| Pan troglodytes BAC clone RP43-85B14 from 7, comp...	46	0.15
11	gb\|AC006319.3\| Homo sapiens PAC clone RP5-837C9 from 7, complete...	46	0.15
12	gb\|AC098931.3\| Homo sapiens chromosome 3 clone RP11-353I6, compl...	44	0.59
13	emb\|BX901973.12\| Zebrafish DNA sequence from clone DKEY-26L17 in...	42	2.3
14	gb\|AY936598.1\| Phyllanthus gardnerianus trnK gene, partial seque...	42	2.3
15	gb\|AY936585.1\| Phyllanthus chrysanthus trnK gene, partial sequen...	42	2.3
16	gb\|AC007051.3\| Homo sapiens chromosome 3, clone hRPK.44_A_1, com...	42	2.3
17	gb\|AC007919.18\| Homo sapiens 3 BAC RP11-408H1 (Roswell Park Canc...	42	2.3
18	gb\|AC068051.7\| Homo sapiens BAC clone RP11-172J1 from 2, complet...	42	2.3
19	emb\|BX649514.8\| Zebrafish DNA sequence from clone CH211-232P6 in...	42	2.3
20	gb\|AC010072.5\|AC010072 Homo sapiens chromosome 14q31 clone CTD-2...	42	2.3
21	emb\|BX649444.12\| Zebrafish DNA sequence from clone DKEYP-27E10 i...	42	2.3
22	gb\|AE017226.1\| Treponema denticola ATCC 35405, complete genome	42	2.3
23	emb\|AL732625.8\| Mouse DNA sequence from clone RP23-169H17 on chr...	42	2.3
24	emb\|AL732460.7\| Mouse DNA sequence from clone RP23-113I19 on chr...	42	2.3
25	ref\|XM_417954.1\| PREDICTED: Gallus gallus similar to RIKEN cDNA ...	40	9.3
26	gb\|AE017263.1\| Mesoplasma florum L1 complete genome	40	9.3
27	gb\|AC140370.3\| Mus musculus BAC clone RP24-75N6 from chromosome ...	40	9.3
28	emb\|BX664703.21\| Zebrafish DNA sequence from clone DKEYP-74A8 in...	40	9.3
29	ref\|XM_643567.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	9.3
30	ref\|XM_644716.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	9.3
31	ref\|XM_648378.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	9.3
32	ref\|XM_648663.1\| Entamoeba histolytica HM-1:IMSS hypothetical pr...	40	9.3
33	ref\|XM_660450.1\| Cryptosporidium hominis TU502 hypothetical prot...	40	9.3
34	gb\|AC114403.15\| Mus musculus chromosome 1, clone RP23-197H1, com...	40	9.3
35	gb\|AY319521.1\| Synthetic construct Bacteriophage SopE-Phi kanamy...	40	9.3
36	emb\|AL391318.21\| Human DNA sequence from clone RP11-496H23 on ch...	40	9.3
37	gb\|AC090698.14\| Homo sapiens chromosome 17, clone RP11-296K13, c...	40	9.3
38	emb\|BX321904.19\| Zebrafish DNA sequence from clone DKEY-279K15 i...	40	9.3
39	emb\|CR394534.6\| Zebrafish DNA sequence from clone CH211-276A17 i...	40	9.3
40	emb\|CR392348.10\| Zebrafish DNA sequence from clone DKEYP-51A12 i...	40	9.3
41	gb\|AC012310.5\| Homo sapiens chromosome 19 clone CTC-518O7, compl...	40	9.3
42	gb\|AC026337.29\| Homo sapiens 2 BAC RP11-105E24 (Roswell Park Can...	40	9.3
43	emb\|BX569785.12\| Zebrafish DNA sequence from clone DKEY-159F4 in...	40	9.3
44	dbj\|AP008934.1\| Staphylococcus saprophyticus subsp. saprophyticu...	40	9.3
45	ref\|XM_628123.1\| Cryptosporidium parvum Iowa II hypothetical pro...	40	9.3
46	gb\|AC026445.5\| Homo sapiens chromosome 5 clone CTD-2306M10, comp...	40	9.3
47	gb\|AC016564.6\| Homo sapiens chromosome 5 clone CTC-538E9, comple...	40	9.3
48	emb\|CR338830.1\| Gallus gallus finished cDNA, clone ChEST974l3	40	9.3
49	gb\|AC021713.7\|AC021713 Homo sapiens chromosome , clone RP11-63D1...	40	9.3
50	gb\|AC010420.11\| Homo sapiens chromosome 5 clone CTD-2187J20, com...	40	9.3
51	gb\|AC018678.9\| Homo sapiens BAC clone RP11-279E17 from 2, comple...	40	9.3
52	ref\|XM_577905.1\| PREDICTED: Rattus norvegicus similar to prohibi...	40	9.3
53	emb\|BX470223.14\| Zebrafish DNA sequence from clone DKEY-45P9 in ...	40	9.3
54	gb\|AC147034.2\| Mus musculus BAC clone RP23-189C2 from chromosome...	40	9.3
55	emb\|BX890617.13\| Zebrafish DNA sequence from clone DKEYP-84F11 i...	40	9.3
56	emb\|BX465184.7\| Zebrafish DNA sequence from clone DKEY-20N10 in ...	40	9.3
57	emb\|BX005050.6\| Zebrafish DNA sequence from clone CH211-11A11, c...	40	9.3
58	emb\|BX005067.6\| Zebrafish DNA sequence from clone CH211-182K2 in...	40	9.3
59	emb\|AL772339.5\| Zebrafish DNA sequence from clone CH211-139K23, ...	40	9.3
60	gb\|M79460.1\|BACHYMEPR B.firmus hypothetical membrane protein and...	40	9.3
61	dbj\|AB026531.1\| Lordiphosa pseudotenuicauda gene for alcohol deh...	40	9.3

>gb|AC108763.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
              OSJNBb0004A05, complete sequence
          Length = 157913

 Score =  168 bits (85), Expect = 2e-38
 Identities = 169/197 (85%)
 Strand = Plus / Minus

                                                                          
Query: 480    ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 539
              ||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 115528 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 115469

                                                                          
Query: 540    gcatgctttccagctttggcacgagcagcttcatcaaataccggcaggacctcaacatgc 599
              ||||||   |||||||| ||||||||||| |||||| |  | | |||||||||  |||| 
Sbjct: 115468 gcatgcacgccagctttagcacgagcagcctcatcagaagcagacaggacctctgcatgt 115409

                                                                          
Query: 600    tcaagacctaactgccttctgatcagctccaggttctcttcgagcacatttatttcacca 659
              ||||| |||| ||||||  |||||||||||| |||||| ||||| ||| | |||||||||
Sbjct: 115408 tcaaggcctacctgcctcttgatcagctccaagttctcctcgagaacactcatttcacca 115349

                               
Query: 660    aaaggaagcttcaaatt 676
              |||||||||||||||||
Sbjct: 115348 aaaggaagcttcaaatt 115332

to top

>dbj|AK099796.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097H06, full
            insert sequence
          Length = 3673

 Score =  168 bits (85), Expect = 2e-38
 Identities = 169/197 (85%)
 Strand = Plus / Minus

                                                                        
Query: 480  ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 539
            ||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 3402 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 3343

                                                                        
Query: 540  gcatgctttccagctttggcacgagcagcttcatcaaataccggcaggacctcaacatgc 599
            ||||||   |||||||| ||||||||||| |||||| |  | | |||||||||  |||| 
Sbjct: 3342 gcatgcacgccagctttagcacgagcagcctcatcagaagcagacaggacctctgcatgt 3283

                                                                        
Query: 600  tcaagacctaactgccttctgatcagctccaggttctcttcgagcacatttatttcacca 659
            ||||| |||| ||||||  |||||||||||| |||||| ||||| ||| | |||||||||
Sbjct: 3282 tcaaggcctacctgcctcttgatcagctccaagttctcctcgagaacactcatttcacca 3223

                             
Query: 660  aaaggaagcttcaaatt 676
            |||||||||||||||||
Sbjct: 3222 aaaggaagcttcaaatt 3206

to top

>dbj|AK100624.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108I24, full
            insert sequence
          Length = 3669

 Score =  168 bits (85), Expect = 2e-38
 Identities = 169/197 (85%)
 Strand = Plus / Minus

                                                                        
Query: 480  ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 539
            ||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 3402 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 3343

                                                                        
Query: 540  gcatgctttccagctttggcacgagcagcttcatcaaataccggcaggacctcaacatgc 599
            ||||||   |||||||| ||||||||||| |||||| |  | | |||||||||  |||| 
Sbjct: 3342 gcatgcacgccagctttagcacgagcagcctcatcagaagcagacaggacctctgcatgt 3283

                                                                        
Query: 600  tcaagacctaactgccttctgatcagctccaggttctcttcgagcacatttatttcacca 659
            ||||| |||| ||||||  |||||||||||| |||||| ||||| ||| | |||||||||
Sbjct: 3282 tcaaggcctacctgcctcttgatcagctccaagttctcctcgagaacactcatttcacca 3223

                             
Query: 660  aaaggaagcttcaaatt 676
            |||||||||||||||||
Sbjct: 3222 aaaggaagcttcaaatt 3206

to top

>dbj|AK062108.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-B04, full
            insert sequence
          Length = 1434

 Score =  168 bits (85), Expect = 2e-38
 Identities = 169/197 (85%)
 Strand = Plus / Minus

                                                                        
Query: 480  ttgctcatgaatattgcaactggctcaccaggggaaggcggattcttgtccagcacagaa 539
            ||||||||||| ||||| |||||||||||||| ||||||||  |||||||||||| ||||
Sbjct: 1182 ttgctcatgaagattgctactggctcaccaggagaaggcggggtcttgtccagcatagaa 1123

                                                                        
Query: 540  gcatgctttccagctttggcacgagcagcttcatcaaataccggcaggacctcaacatgc 599
            ||||||   |||||||| ||||||||||| |||||| |  | | |||||||||  |||| 
Sbjct: 1122 gcatgcacgccagctttagcacgagcagcctcatcagaagcagacaggacctctgcatgt 1063

                                                                        
Query: 600  tcaagacctaactgccttctgatcagctccaggttctcttcgagcacatttatttcacca 659
            ||||| |||| ||||||  |||||||||||| |||||| ||||| ||| | |||||||||
Sbjct: 1062 tcaaggcctacctgcctcttgatcagctccaagttctcctcgagaacactcatttcacca 1003

                             
Query: 660  aaaggaagcttcaaatt 676
            |||||||||||||||||
Sbjct: 1002 aaaggaagcttcaaatt 986

to top

>ref|XM_450769.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3772

 Score =  123 bits (62), Expect = 8e-25
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                        
Query: 461  ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 520
            |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 3412 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 3353

                                                                        
Query: 521  attcttgtccagcacagaagcatgctttccagctttggcacgagcagcttcatcaaatac 580
              ||||||||| ||  ||| ||||    ||||| || |||||||  ||||||||| |  |
Sbjct: 3352 ggtcttgtccaacattgaaacatgagcaccagccttagcacgagttgcttcatcagaagc 3293

                                                                        
Query: 581  cggcaggacctcaacatgctcaagacctaactgccttctgatcagctccaggttctcttc 640
             | || |||||| ||||| ||||| |||| ||||||  |||||| |||||  ||||| ||
Sbjct: 3292 tgacaagacctctacatggtcaaggcctacctgcctcttgatcaactccaaattctcctc 3233

                                                  
Query: 641  gagcacatttatttcaccaaaaggaagcttcaaattta 678
            ||| ||||| ||||||||||| |||||||||| |||||
Sbjct: 3232 gagaacattcatttcaccaaatggaagcttcagattta 3195

to top

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  123 bits (62), Expect = 8e-25
 Identities = 179/218 (82%)
 Strand = Plus / Plus

                                                                            
Query: 461      ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 520
                |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 12677388 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 12677447

                                                                            
Query: 521      attcttgtccagcacagaagcatgctttccagctttggcacgagcagcttcatcaaatac 580
                  ||||||||| ||  ||| ||||    ||||| || |||||||  ||||||||| |  |
Sbjct: 12677448 ggtcttgtccaacattgaaacatgagcaccagccttagcacgagttgcttcatcagaagc 12677507

                                                                            
Query: 581      cggcaggacctcaacatgctcaagacctaactgccttctgatcagctccaggttctcttc 640
                 | || |||||| ||||| ||||| |||| ||||||  |||||| |||||  ||||| ||
Sbjct: 12677508 tgacaagacctctacatggtcaaggcctacctgcctcttgatcaactccaaattctcctc 12677567

                                                      
Query: 641      gagcacatttatttcaccaaaaggaagcttcaaattta 678
                ||| ||||| ||||||||||| |||||||||| |||||
Sbjct: 12677568 gagaacattcatttcaccaaatggaagcttcagattta 12677605



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                          
Query: 619      tgatcagctccaggttctcttcgagcacatttatttcaccaaaaggaagcttcaaatt 676
                |||||||||||| || ||| ||||| ||| | ||||||||||||||||||||||||||
Sbjct: 19184459 tgatcagctccaagtcctcctcgagaacactcatttcaccaaaaggaagcttcaaatt 19184402



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                     
Query: 523      tcttgtccagcacagaagcatgctttccagctttggcacgagcagcttcatca 575
                |||||||||||| ||| ||||||   |||||||| ||||||||||||||||||
Sbjct: 19184554 tcttgtccagcatagaggcatgcacgccagctttagcacgagcagcttcatca 19184502

to top

>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0041C07
          Length = 179047

 Score =  123 bits (62), Expect = 8e-25
 Identities = 179/218 (82%)
 Strand = Plus / Plus

                                                                          
Query: 461    ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 520
              |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 143326 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 143385

                                                                          
Query: 521    attcttgtccagcacagaagcatgctttccagctttggcacgagcagcttcatcaaatac 580
                ||||||||| ||  ||| ||||    ||||| || |||||||  ||||||||| |  |
Sbjct: 143386 ggtcttgtccaacattgaaacatgagcaccagccttagcacgagttgcttcatcagaagc 143445

                                                                          
Query: 581    cggcaggacctcaacatgctcaagacctaactgccttctgatcagctccaggttctcttc 640
               | || |||||| ||||| ||||| |||| ||||||  |||||| |||||  ||||| ||
Sbjct: 143446 tgacaagacctctacatggtcaaggcctacctgcctcttgatcaactccaaattctcctc 143505

                                                    
Query: 641    gagcacatttatttcaccaaaaggaagcttcaaattta 678
              ||| ||||| ||||||||||| |||||||||| |||||
Sbjct: 143506 gagaacattcatttcaccaaatggaagcttcagattta 143543

to top

>dbj|AK068860.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169D12, full
            insert sequence
          Length = 3772

 Score =  123 bits (62), Expect = 8e-25
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                        
Query: 461  ctgggcttcaaactcctgcttgctcatgaatattgcaactggctcaccaggggaaggcgg 520
            |||||||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||||||
Sbjct: 3412 ctgggcttcaaactcctgcttgctgatgaagattgctactggttcaccaggagaaggcgg 3353

                                                                        
Query: 521  attcttgtccagcacagaagcatgctttccagctttggcacgagcagcttcatcaaatac 580
              ||||||||| ||  ||| ||||    ||||| || |||||||  ||||||||| |  |
Sbjct: 3352 ggtcttgtccaacattgaaacatgagcaccagccttagcacgagttgcttcatcagaagc 3293

                                                                        
Query: 581  cggcaggacctcaacatgctcaagacctaactgccttctgatcagctccaggttctcttc 640
             | || |||||| ||||| ||||| |||| ||||||  |||||| |||||  ||||| ||
Sbjct: 3292 tgacaagacctctacatggtcaaggcctacctgcctcttgatcaactccaaattctcctc 3233

                                                  
Query: 641  gagcacatttatttcaccaaaaggaagcttcaaattta 678
            ||| ||||| ||||||||||| |||||||||| |||||
Sbjct: 3232 gagaacattcatttcaccaaatggaagcttcagattta 3195

to top

>emb|AL935122.10| Zebrafish DNA sequence from clone CH211-197C14 in linkage group 6,
             complete sequence
          Length = 198363

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 82    agatactcaaatgacttggcaaaa 105
             ||||||||||||||||||||||||
Sbjct: 47931 agatactcaaatgacttggcaaaa 47954

to top

>gb|AC147021.3| Pan troglodytes BAC clone RP43-85B14 from 7, complete sequence
          Length = 159960

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 74   acaaaagaagatactcaaatgac 96
            |||||||||||||||||||||||
Sbjct: 4991 acaaaagaagatactcaaatgac 4969

to top

>gb|AC006319.3| Homo sapiens PAC clone RP5-837C9 from 7, complete sequence
          Length = 85821

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 74    acaaaagaagatactcaaatgac 96
             |||||||||||||||||||||||
Sbjct: 29899 acaaaagaagatactcaaatgac 29921

to top

>gb|AC098931.3| Homo sapiens chromosome 3 clone RP11-353I6, complete sequence
          Length = 179082

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 75     caaaagaagatactcaaatgac 96
              ||||||||||||||||||||||
Sbjct: 169956 caaaagaagatactcaaatgac 169977

to top

>emb|BX901973.12| Zebrafish DNA sequence from clone DKEY-26L17 in linkage group 3,
             complete sequence
          Length = 226081

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 69    tgaatacaaaagaagatactc 89
             |||||||||||||||||||||
Sbjct: 16052 tgaatacaaaagaagatactc 16072

to top

>gb|AY936598.1| Phyllanthus gardnerianus trnK gene, partial sequence; and maturase
           K (matK) gene, complete cds; chloroplast
          Length = 1835

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 45  aaattgaaaatgaagattgaggaat 69
           |||||||||||||| ||||||||||
Sbjct: 155 aaattgaaaatgaaaattgaggaat 179

to top

>gb|AY936585.1| Phyllanthus chrysanthus trnK gene, partial sequence; and maturase K
           (matK) gene, complete cds; chloroplast
          Length = 1818

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 45  aaattgaaaatgaagattgaggaat 69
           |||||||||||||| ||||||||||
Sbjct: 155 aaattgaaaatgaaaattgaggaat 179

to top

>gb|AC007051.3| Homo sapiens chromosome 3, clone hRPK.44_A_1, complete sequence
          Length = 167810

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 148   aaaaaagtactctattatagctaaactgc 176
             |||||| ||||||||||||| ||||||||
Sbjct: 14195 aaaaaaatactctattatagttaaactgc 14167

to top

>gb|AC007919.18| Homo sapiens 3 BAC RP11-408H1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184989

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 148    aaaaaagtactctattatagctaaactgc 176
              |||||| ||||||||||||| ||||||||
Sbjct: 121931 aaaaaaatactctattatagttaaactgc 121959

to top

>gb|AC068051.7| Homo sapiens BAC clone RP11-172J1 from 2, complete sequence
          Length = 122076

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 11    cacaaggactgaagaacaaaa 31
             |||||||||||||||||||||
Sbjct: 91551 cacaaggactgaagaacaaaa 91571

to top

>emb|BX649514.8| Zebrafish DNA sequence from clone CH211-232P6 in linkage group 4,
              complete sequence
          Length = 152488

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 68     atgaatacaaaagaagatact 88
              |||||||||||||||||||||
Sbjct: 102703 atgaatacaaaagaagatact 102723

to top

>gb|AC010072.5|AC010072 Homo sapiens chromosome 14q31 clone CTD-2173I4 containing TSHR gene,
             partial cds; and unknown gene, complete sequence
          Length = 124347

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 14    aaggactgaagaacaaaagac 34
             |||||||||||||||||||||
Sbjct: 23833 aaggactgaagaacaaaagac 23853

to top

>emb|BX649444.12| Zebrafish DNA sequence from clone DKEYP-27E10 in linkage group 4,
             complete sequence
          Length = 85097

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    atgaatacaaaagaagatact 88
             |||||||||||||||||||||
Sbjct: 15632 atgaatacaaaagaagatact 15652

to top

>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome
          Length = 2843201

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 42      tcaaaattgaaaatgaagatt 62
               |||||||||||||||||||||
Sbjct: 2690211 tcaaaattgaaaatgaagatt 2690231

to top

>emb|AL732625.8| Mouse DNA sequence from clone RP23-169H17 on chromosome 2, complete
              sequence
          Length = 224038

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 193    cattttcatgattcatgattg 213
              |||||||||||||||||||||
Sbjct: 206210 cattttcatgattcatgattg 206190

to top

>emb|AL732460.7| Mouse DNA sequence from clone RP23-113I19 on chromosome X, complete
             sequence
          Length = 198572

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                  
Query: 100   gcaaaatgataatattcacgacaatttaactatgtca 136
             |||||||||| |||| ||| | |||||||||||||||
Sbjct: 20012 gcaaaatgattatatgcactagaatttaactatgtca 20048

to top

>ref|XM_417954.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 1200009H11
           (LOC419818), mRNA
          Length = 1413

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 426 caaagttctgtgagaagatt 445
           ||||||||||||||||||||
Sbjct: 512 caaagttctgtgagaagatt 531

to top

>gb|AE017263.1| Mesoplasma florum L1 complete genome
          Length = 793224

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 650  tatttcaccaaaaggaagcttcaa 673
            ||||||| ||||||||||||||||
Sbjct: 9389 tatttcatcaaaaggaagcttcaa 9412

to top

>gb|AC140370.3| Mus musculus BAC clone RP24-75N6 from chromosome 7, complete sequence
          Length = 189786

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    aatacaaaagaagatactca 90
             ||||||||||||||||||||
Sbjct: 42564 aatacaaaagaagatactca 42583

to top

>emb|BX664703.21| Zebrafish DNA sequence from clone DKEYP-74A8 in linkage group 6, complete
              sequence
          Length = 193958

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tgaatacaaaagaagatact 88
              ||||||||||||||||||||
Sbjct: 163379 tgaatacaaaagaagatact 163398

to top

>ref|XM_643567.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (414.t00005)
           partial mRNA
          Length = 588

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 392 aagtgattcgacaatgtcaa 411
           ||||||||||||||||||||
Sbjct: 450 aagtgattcgacaatgtcaa 469

to top

>ref|XM_644716.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (269.t00009)
           partial mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 392 aagtgattcgacaatgtcaa 411
           ||||||||||||||||||||
Sbjct: 717 aagtgattcgacaatgtcaa 736

to top

>ref|XM_648378.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (82.t00004)
           partial mRNA
          Length = 855

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 392 aagtgattcgacaatgtcaa 411
           ||||||||||||||||||||
Sbjct: 717 aagtgattcgacaatgtcaa 736

to top

>ref|XM_648663.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (73.t00030)
           partial mRNA
          Length = 768

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 392 aagtgattcgacaatgtcaa 411
           ||||||||||||||||||||
Sbjct: 630 aagtgattcgacaatgtcaa 649

to top

>ref|XM_660450.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.10343)
            partial mRNA
          Length = 3963

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   caaaattgaaaatgaagatt 62
            ||||||||||||||||||||
Sbjct: 2777 caaaattgaaaatgaagatt 2758

to top

>gb|AC114403.15| Mus musculus chromosome 1, clone RP23-197H1, complete sequence
          Length = 221305

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 643    gcacatttatttcaccaaaa 662
              ||||||||||||||||||||
Sbjct: 172288 gcacatttatttcaccaaaa 172269

to top

>gb|AY319521.1| Synthetic construct Bacteriophage SopE-Phi kanamycin cassette
            insertion derivative, complete sequence
          Length = 35155

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   ctcaaaattgaaaatgaaga 60
            ||||||||||||||||||||
Sbjct: 9576 ctcaaaattgaaaatgaaga 9595

to top

>emb|AL391318.21| Human DNA sequence from clone RP11-496H23 on chromosome 10, complete
             sequence
          Length = 45312

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    tacaaaagaagatactcaaatgac 96
             |||||||||||||| |||||||||
Sbjct: 30051 tacaaaagaagatattcaaatgac 30074

to top

>gb|AC090698.14| Homo sapiens chromosome 17, clone RP11-296K13, complete sequence
          Length = 87790

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   gcaaaatgataatattcacg 119
             ||||||||||||||||||||
Sbjct: 50672 gcaaaatgataatattcacg 50691

to top

>emb|BX321904.19| Zebrafish DNA sequence from clone DKEY-279K15 in linkage group 1,
              complete sequence
          Length = 153891

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 69     tgaatacaaaagaagatact 88
              ||||||||||||||||||||
Sbjct: 138534 tgaatacaaaagaagatact 138553

to top

>emb|CR394534.6| Zebrafish DNA sequence from clone CH211-276A17 in linkage group 6,
            complete sequence
          Length = 153370

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 69   tgaatacaaaagaagatact 88
            ||||||||||||||||||||
Sbjct: 9489 tgaatacaaaagaagatact 9508

to top

>emb|CR392348.10| Zebrafish DNA sequence from clone DKEYP-51A12 in linkage group 13,
             complete sequence
          Length = 89943

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tgaatacaaaagaagatact 88
             ||||||||||||||||||||
Sbjct: 78710 tgaatacaaaagaagatact 78691

to top

>gb|AC012310.5| Homo sapiens chromosome 19 clone CTC-518O7, complete sequence
          Length = 115767

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   cctcaacagtactccattttcatg 202
             |||||||||| |||||||||||||
Sbjct: 81440 cctcaacagttctccattttcatg 81417

to top

>gb|AC026337.29| Homo sapiens 2 BAC RP11-105E24 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 171004

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    acaaaagaagatactcaaat 93
             ||||||||||||||||||||
Sbjct: 30996 acaaaagaagatactcaaat 30977

to top

>emb|BX569785.12| Zebrafish DNA sequence from clone DKEY-159F4 in linkage group 10,
             complete sequence
          Length = 140734

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tgaatacaaaagaagatact 88
             ||||||||||||||||||||
Sbjct: 43795 tgaatacaaaagaagatact 43776

to top

>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA,
              complete genome
          Length = 2516575

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    aatcagcaattcaagcgttt 234
              ||||||||||||||||||||
Sbjct: 871749 aatcagcaattcaagcgttt 871768

to top

>ref|XM_628123.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd1_3070),
            partial mRNA
          Length = 11340

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   caaaattgaaaatgaagatt 62
            ||||||||||||||||||||
Sbjct: 8144 caaaattgaaaatgaagatt 8125

to top

>gb|AC026445.5| Homo sapiens chromosome 5 clone CTD-2306M10, complete sequence
          Length = 113087

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   attttcatgattcatgattg 213
             ||||||||||||||||||||
Sbjct: 23376 attttcatgattcatgattg 23357

to top

>gb|AC016564.6| Homo sapiens chromosome 5 clone CTC-538E9, complete sequence
          Length = 132573

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   attctgggcttcaaactcct 477
             ||||||||||||||||||||
Sbjct: 69749 attctgggcttcaaactcct 69768

to top

>emb|CR338830.1| Gallus gallus finished cDNA, clone ChEST974l3
          Length = 887

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 426 caaagttctgtgagaagatt 445
           ||||||||||||||||||||
Sbjct: 406 caaagttctgtgagaagatt 425

to top

>gb|AC021713.7|AC021713 Homo sapiens chromosome , clone RP11-63D14, complete sequence
          Length = 148648

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    caaaattgaaaatgaagatt 62
             ||||||||||||||||||||
Sbjct: 95907 caaaattgaaaatgaagatt 95888

to top

>gb|AC010420.11| Homo sapiens chromosome 5 clone CTD-2187J20, complete sequence
          Length = 88736

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 194  attttcatgattcatgattg 213
            ||||||||||||||||||||
Sbjct: 2466 attttcatgattcatgattg 2485

to top

>gb|AC018678.9| Homo sapiens BAC clone RP11-279E17 from 2, complete sequence
          Length = 169991

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    acaaaagaagatactcaaat 93
             ||||||||||||||||||||
Sbjct: 71249 acaaaagaagatactcaaat 71230

to top

>ref|XM_577905.1| PREDICTED: Rattus norvegicus similar to prohibitin (LOC365580),
           mRNA
          Length = 774

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 632 gttctcttcgagcacatttatttc 655
           ||||||||||| ||||||||||||
Sbjct: 79  gttctcttcgaacacatttatttc 56

to top

>emb|BX470223.14| Zebrafish DNA sequence from clone DKEY-45P9 in linkage group 10,
             complete sequence
          Length = 247644

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    tgaatacaaaagaagatact 88
             ||||||||||||||||||||
Sbjct: 50876 tgaatacaaaagaagatact 50895

to top

>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence
          Length = 213581

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    aatacaaaagaagatactca 90
             ||||||||||||||||||||
Sbjct: 93764 aatacaaaagaagatactca 93783

to top

>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19,
              complete sequence
          Length = 182182

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     tgaatacaaaagaagatact 88
              ||||||||||||||||||||
Sbjct: 145066 tgaatacaaaagaagatact 145047

to top

>emb|BX465184.7| Zebrafish DNA sequence from clone DKEY-20N10 in linkage group 20,
             complete sequence
          Length = 139351

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tgaatacaaaagaagatact 88
             ||||||||||||||||||||
Sbjct: 25758 tgaatacaaaagaagatact 25739

to top

>emb|BX005050.6| Zebrafish DNA sequence from clone CH211-11A11, complete sequence
          Length = 166695

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    tgaatacaaaagaagatact 88
             ||||||||||||||||||||
Sbjct: 88841 tgaatacaaaagaagatact 88822

to top

>emb|BX005067.6| Zebrafish DNA sequence from clone CH211-182K2 in linkage group 24,
              complete sequence
          Length = 162692

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     tgaatacaaaagaagatact 88
              ||||||||||||||||||||
Sbjct: 118093 tgaatacaaaagaagatact 118074

to top

>emb|AL772339.5| Zebrafish DNA sequence from clone CH211-139K23, complete sequence
          Length = 166809

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     tgaatacaaaagaagatact 88
              ||||||||||||||||||||
Sbjct: 115254 tgaatacaaaagaagatact 115235

to top

>gb|M79460.1|BACHYMEPR B.firmus hypothetical membrane protein and hypothetical lipoprotein,
            complete CDS's
          Length = 1200

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   tgaaaatgaagattgaggaa 68
            ||||||||||||||||||||
Sbjct: 1090 tgaaaatgaagattgaggaa 1109

to top

>dbj|AB026531.1| Lordiphosa pseudotenuicauda gene for alcohol dehydrogenase, partial
           cds
          Length = 820

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 agcaattcaagcgtttagtt 238
           ||||||||||||||||||||
Sbjct: 570 agcaattcaagcgtttagtt 551


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,484,619
Number of Sequences: 3902068
Number of extensions: 7484619
Number of successful extensions: 142498
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142196
Number of HSP's gapped (non-prelim): 298
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result