ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags14g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK104932.1| Oryza sativa (japonica cultivar-group) cDNA clon... 472 e-130
2ref|NM_192312.1| Oryza sativa (japonica cultivar-group), predic... 470 e-129
3dbj|AK069337.1| Oryza sativa (japonica cultivar-group) cDNA clon... 464 e-127
4gb|AY568720.1| Lycopersicon esculentum putative anion:sodium sym... 149 2e-32
5ref|NM_179758.2| Arabidopsis thaliana bile acid:sodium symporter... 137 6e-29
6gb|AF498303.1| Arabidopsis thaliana putative sodium-dependent bi... 137 6e-29
7emb|BX821670.1|CNS0A947 Arabidopsis thaliana Full-length cDNA Co... 137 6e-29
8gb|BT003925.1| Arabidopsis thaliana clone RAFL15-23-I10 (R20694)... 137 6e-29
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
10dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
11gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 ma... 92 3e-15
12emb|BX821429.1|CNS0A9AK Arabidopsis thaliana Full-length cDNA Co... 80 1e-11
13gb|AY581831.1| Cynodon dactylon unknown mRNA 72 3e-09
14gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete se... 44 0.64
15emb|BX571774.9| Zebrafish DNA sequence from clone DKEY-250A19 in... 44 0.64
16gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cance... 44 0.64
17gb|AC096735.3| Homo sapiens BAC clone RP11-135M12 from 4, comple... 44 0.64
18gb|AC159424.1| Trypanosoma brucei chromosome 6 clone RPCI93-26F1... 42 2.5
19gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 42 2.5
20gb|AC079606.6| Trypanosoma brucei chromosome 2 clone RPCI93-3B10... 42 2.5
21gb|AC073246.5| Trypanosoma brucei chromosome 2 clone RPCI93-25N2... 42 2.5
22gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence 42 2.5
23gb|AE002135.1| Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 42 2.5
24ref|XM_841290.1| Trypanosoma brucei TREU927 retrotransposon hot ... 42 2.5
25ref|XM_946386.1| Trypanosoma brucei TREU927 retrotransposon hot ... 42 2.5
26ref|XM_946390.1| Trypanosoma brucei TREU927 retrotransposon hot ... 42 2.5
27ref|XM_946391.1| Trypanosoma brucei TREU927 retrotransposon hot ... 42 2.5
28ref|XM_946393.1| Trypanosoma brucei TREU927 retrotransposon hot ... 42 2.5
29ref|XM_946404.1| Trypanosoma brucei TREU927 retrotransposon hot ... 42 2.5
30emb|BX248585.1| Blochmannia floridanus complete genome; segment 2/3 42 2.5
31emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression sit... 42 2.5
32emb|AL671256.1|TBN19B2 Trypanosoma brucei VO2 VSG expression sit... 42 2.5
33gb|AY046890.1| Trypanosoma brucei RHS4a (RHS4a) gene, complete cds 42 2.5
34gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 2.5 
>dbj|AK104932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-B10, full
            insert sequence
          Length = 1616

 Score =  472 bits (238), Expect = e-130
 Identities = 427/490 (87%)
 Strand = Plus / Minus

                                                                        
Query: 239  ttcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactg 298
            ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |||||||
Sbjct: 1315 ttcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactg 1256

                                                                        
Query: 299  cgagagcactgcctccgagcgccatgcacacaacactgacagcagaaggaacagcaacaa 358
            | |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || |
Sbjct: 1255 caagagcactccctccaagcgccatgcatacaacactgacagcagatggaacagctacga 1196

                                                                        
Query: 359  gagggtttgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccac 418
            | || || ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1195 gtggattcgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcatcccgc 1136

                                                                        
Query: 419  actcaattgagatggttctagaagttgattccccaaaagaagaccatttcgacatccaat 478
            | ||||| ||||| || ||||||||||||||||||||||| ||   ||| || | |||||
Sbjct: 1135 attcaatagagatagtcctagaagttgattccccaaaagaggaaacttttgataaccaat 1076

                                                                        
Query: 479  agccaagagtgaatgcaacagcatgcagcagagcaacagggagaataagttgagcacctt 538
            | ||||| |  || ||| || |||||||||||||||| || |  ||||||||| ||||||
Sbjct: 1075 acccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataagttgaccacctt 1016

                                                                        
Query: 539  gagttttcaacacttctgcgacttgcccaatagggctagcacaaagcaaggtggtgagga 598
            ||| ||||||||| |||| |||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 1015 gagctttcaacacctctgagacttgtccgataggactagcacaaagcaaagtggtgagga 956

                                                                        
Query: 599  tgacccctatcagtggtgttatggagataatccgctcggtaaacttgggaaaatactcat 658
              ||||| |||| |||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct: 955  gaaccccaatcaatggtgttatggatataatgcgctcagtaaacttaggaaaatactcat 896

                                                                        
Query: 659  gtgccaatactccaacgatagtcggtactaaaacaacctgaaaagtactgatggccaagc 718
            | ||||| ||||| || ||||| || | |||||||||||||||||||||||||||||| |
Sbjct: 895  gcgccaagactccgacaatagttggcagtaaaacaacctgaaaagtactgatggccaatc 836

                      
Query: 719  ctgcagcatc 728
            ||||||||||
Sbjct: 835  ctgcagcatc 826
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>ref|NM_192312.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1227

 Score =  470 bits (237), Expect = e-129
 Identities = 426/489 (87%)
 Strand = Plus / Minus

                                                                        
Query: 240  tcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactgc 299
            |||||||||||||||||| ||||||| ||||||||| |||||||| ||||| ||||||||
Sbjct: 1227 tcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactgc 1168

                                                                        
Query: 300  gagagcactgcctccgagcgccatgcacacaacactgacagcagaaggaacagcaacaag 359
             |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || ||
Sbjct: 1167 aagagcactccctccaagcgccatgcatacaacactgacagcagatggaacagctacgag 1108

                                                                        
Query: 360  agggtttgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccaca 419
             || || ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1107 tggattcgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcatcccgca 1048

                                                                        
Query: 420  ctcaattgagatggttctagaagttgattccccaaaagaagaccatttcgacatccaata 479
             ||||| ||||| || ||||||||||||||||||||||| ||   ||| || | ||||||
Sbjct: 1047 ttcaatagagatagtcctagaagttgattccccaaaagaggaaacttttgataaccaata 988

                                                                        
Query: 480  gccaagagtgaatgcaacagcatgcagcagagcaacagggagaataagttgagcaccttg 539
             ||||| |  || ||| || |||||||||||||||| || |  ||||||||| |||||||
Sbjct: 987  cccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataagttgaccaccttg 928

                                                                        
Query: 540  agttttcaacacttctgcgacttgcccaatagggctagcacaaagcaaggtggtgaggat 599
            || ||||||||| |||| |||||| || ||||| |||||||||||||| |||||||||| 
Sbjct: 927  agctttcaacacctctgagacttgtccgataggactagcacaaagcaaagtggtgaggag 868

                                                                        
Query: 600  gacccctatcagtggtgttatggagataatccgctcggtaaacttgggaaaatactcatg 659
             ||||| |||| |||||||||||| ||||| ||||| |||||||| ||||||||||||||
Sbjct: 867  aaccccaatcaatggtgttatggatataatgcgctcagtaaacttaggaaaatactcatg 808

                                                                        
Query: 660  tgccaatactccaacgatagtcggtactaaaacaacctgaaaagtactgatggccaagcc 719
             ||||| ||||| || ||||| || | |||||||||||||||||||||||||||||| ||
Sbjct: 807  cgccaagactccgacaatagttggcagtaaaacaacctgaaaagtactgatggccaatcc 748

                     
Query: 720  tgcagcatc 728
            |||||||||
Sbjct: 747  tgcagcatc 739
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>dbj|AK069337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014F07, full
            insert sequence
          Length = 1887

 Score =  464 bits (234), Expect = e-127
 Identities = 426/490 (86%)
 Strand = Plus / Minus

                                                                        
Query: 239  ttcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactg 298
            ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |||||||
Sbjct: 1559 ttcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactg 1500

                                                                        
Query: 299  cgagagcactgcctccgagcgccatgcacacaacactgacagcagaaggaacagcaacaa 358
            | |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||| || |
Sbjct: 1499 caagagcactccctccaagcgccatgcatacaacactgacagcagatggaacagctacga 1440

                                                                        
Query: 359  gagggtttgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccac 418
            | || || ||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 1439 gtggattcgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcatcccgc 1380

                                                                        
Query: 419  actcaattgagatggttctagaagttgattccccaaaagaagaccatttcgacatccaat 478
            | ||||| ||||| || ||||||||||||||||||||||| ||   ||| || | |||||
Sbjct: 1379 attcaatagagatagtcctagaagttgattccccaaaagaggaaacttttgataaccaat 1320

                                                                        
Query: 479  agccaagagtgaatgcaacagcatgcagcagagcaacagggagaataagttgagcacctt 538
            | ||||| |  || ||| || |||||||||||||||| || |  ||||||||| ||||||
Sbjct: 1319 acccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataagttgaccacctt 1260

                                                                        
Query: 539  gagttttcaacacttctgcgacttgcccaatagggctagcacaaagcaaggtggtgagga 598
            ||| |||||| || |||| |||||| || ||||| |||||||||||||| ||||||||||
Sbjct: 1259 gagctttcaatacctctgagacttgtccgataggactagcacaaagcaaagtggtgagga 1200

                                                                        
Query: 599  tgacccctatcagtggtgttatggagataatccgctcggtaaacttgggaaaatactcat 658
              ||||| |||| |||||||||||| ||||| ||||| |||||||| |||||||||||||
Sbjct: 1199 gaaccccaatcaatggtgttatggatataatgcgctcagtaaacttaggaaaatactcat 1140

                                                                        
Query: 659  gtgccaatactccaacgatagtcggtactaaaacaacctgaaaagtactgatggccaagc 718
            | ||||| ||||| || ||||| || | |||||||||||||||||||||||||||||| |
Sbjct: 1139 gcgccaagactccgacaatagttggcagtaaaacaacctgaaaagtactgatggccaatc 1080

                      
Query: 719  ctgcagcatc 728
            ||||||||||
Sbjct: 1079 ctgcagcatc 1070
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>gb|AY568720.1| Lycopersicon esculentum putative anion:sodium symporter mRNA,
            complete cds
          Length = 1224

 Score =  149 bits (75), Expect = 2e-32
 Identities = 135/155 (87%)
 Strand = Plus / Minus

                                                                        
Query: 301  agagcactgcctccgagcgccatgcacacaacactgacagcagaaggaacagcaacaaga 360
            |||||||| || || || |||||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 1163 agagcacttccaccaagtgccatgcagacaacactaacagcagaaggtacagcaacaaga 1104

                                                                        
Query: 361  gggtttgtgaagtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccacac 420
            ||||||||||| |||||||| ||||||| |||||| ||||| ||||||||||||||||| 
Sbjct: 1103 gggtttgtgaaatgcttttgtgcaagtagaaatccgagtgccgaactctgcattccacat 1044

                                               
Query: 421  tcaattgagatggttctagaagttgattccccaaa 455
            || || || || ||||| || |||||||| |||||
Sbjct: 1043 tctatcgaaatagttctggatgttgattcaccaaa 1009



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 538 tgagttttcaacacttctgcgacttgcccaatagggctagcacaaag 584
           |||||||||| ||| ||||||||||| ||||| || |||||||||||
Sbjct: 929 tgagttttcagcacatctgcgacttgaccaatcggactagcacaaag 883
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>ref|NM_179758.2| Arabidopsis thaliana bile acid:sodium symporter/ transporter
            AT2G26900 mRNA, complete cds
          Length = 1504

 Score =  137 bits (69), Expect = 6e-29
 Identities = 221/271 (81%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                        
Query: 316  agcgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgc 375
            |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 1228 agcgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgc 1169

                                                                        
Query: 376  ttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagatggtt 435
            ||||| ||||| || || || || || ||||| ||||||||||| || || || ||||| 
Sbjct: 1168 ttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaatggta 1109

                                                                        
Query: 436  ctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaatgca 495
            |  ||||| || || || |||||| ||   || || ||||||||||||| ||  || || 
Sbjct: 1108 cgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaaggct 1052

                                                                        
Query: 496  acagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacacttct 555
             ||||||| || || || || ||||| ||||||||||| ||||| |||||||| || |||
Sbjct: 1051 gcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaacatct 992

                                           
Query: 556  gcgacttgcccaatagggctagcacaaagca 586
            || ||||| ||||||||||| ||||| ||||
Sbjct: 991  gcaacttgtccaatagggctggcacagagca 961
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>gb|AF498303.1| Arabidopsis thaliana putative sodium-dependent bile acid symporter
            (Sbf1) mRNA, complete cds
          Length = 1340

 Score =  137 bits (69), Expect = 6e-29
 Identities = 221/271 (81%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                        
Query: 316  agcgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgc 375
            |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 1229 agcgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgc 1170

                                                                        
Query: 376  ttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagatggtt 435
            ||||| ||||| || || || || || ||||| ||||||||||| || || || ||||| 
Sbjct: 1169 ttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaatggta 1110

                                                                        
Query: 436  ctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaatgca 495
            |  ||||| || || || |||||| ||   || || ||||||||||||| ||  || || 
Sbjct: 1109 cgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaaggct 1053

                                                                        
Query: 496  acagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacacttct 555
             ||||||| || || || || ||||| ||||||||||| ||||| |||||||| || |||
Sbjct: 1052 gcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaacatct 993

                                           
Query: 556  gcgacttgcccaatagggctagcacaaagca 586
            || ||||| ||||||||||| ||||| ||||
Sbjct: 992  gcaacttgtccaatagggctggcacagagca 962
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>emb|BX821670.1|CNS0A947 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL63ZE07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 601

 Score =  137 bits (69), Expect = 6e-29
 Identities = 221/271 (81%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                       
Query: 316 agcgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgc 375
           |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 325 agcgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgc 266

                                                                       
Query: 376 ttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagatggtt 435
           ||||| ||||| || || || || || ||||| ||||||||||| || || || ||||| 
Sbjct: 265 ttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaatggta 206

                                                                       
Query: 436 ctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaatgca 495
           |  ||||| || || || |||||| ||   || || ||||||||||||| ||  || || 
Sbjct: 205 cgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaaggct 149

                                                                       
Query: 496 acagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacacttct 555
            ||||||| || || || || ||||| ||||||||||| ||||| |||||||| || |||
Sbjct: 148 gcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaacatct 89

                                          
Query: 556 gcgacttgcccaatagggctagcacaaagca 586
           || ||||| ||||||||||| ||||| ||||
Sbjct: 88  gcaacttgtccaatagggctggcacagagca 58
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>gb|BT003925.1| Arabidopsis thaliana clone RAFL15-23-I10 (R20694) putative Na+
            dependent ileal bile acid transporter (At2g26900) mRNA,
            complete cds
          Length = 1409

 Score =  137 bits (69), Expect = 6e-29
 Identities = 221/271 (81%), Gaps = 3/271 (1%)
 Strand = Plus / Minus

                                                                        
Query: 316  agcgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgc 375
            |||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||
Sbjct: 1118 agcgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgc 1059

                                                                        
Query: 376  ttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagatggtt 435
            ||||| ||||| || || || || || ||||| ||||||||||| || || || ||||| 
Sbjct: 1058 ttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaatggta 999

                                                                        
Query: 436  ctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaatgca 495
            |  ||||| || || || |||||| ||   || || ||||||||||||| ||  || || 
Sbjct: 998  cgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaaggct 942

                                                                        
Query: 496  acagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacacttct 555
             ||||||| || || || || ||||| ||||||||||| ||||| |||||||| || |||
Sbjct: 941  gcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaacatct 882

                                           
Query: 556  gcgacttgcccaatagggctagcacaaagca 586
            || ||||| ||||||||||| ||||| ||||
Sbjct: 881  gcaacttgtccaatagggctggcacagagca 851
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  129 bits (65), Expect = 1e-26
 Identities = 86/93 (92%)
 Strand = Plus / Minus

                                                                            
Query: 318      cgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgctt 377
                ||||||||| ||||||||||||||||| |||||||| || || || || |||||||||||
Sbjct: 25973573 cgccatgcatacaacactgacagcagatggaacagctacgagtggattcgtgaagtgctt 25973514

                                                 
Query: 378      ttgggcaagtaaaaatccaagtgcagaactctg 410
                |||||||||||||||||||||||||||||||||
Sbjct: 25973513 ttgggcaagtaaaaatccaagtgcagaactctg 25973481



 Score =  103 bits (52), Expect = 8e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                            
Query: 574      ctagcacaaagcaaggtggtgaggatgacccctatcagtggtgttatggagataatccgc 633
                |||||||||||||| ||||||||||  ||||| |||| |||||||||||| ||||| |||
Sbjct: 25972608 ctagcacaaagcaaagtggtgaggagaaccccaatcaatggtgttatggatataatgcgc 25972549

                                                
Query: 634      tcggtaaacttgggaaaatactcatgtgccaa 665
                || |||||||| |||||||||||||| |||||
Sbjct: 25972548 tcagtaaacttaggaaaatactcatgcgccaa 25972517



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                            
Query: 239      ttcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactg 298
                ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |||||||
Sbjct: 25973778 ttcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactg 25973719

                                
Query: 299      cgagagcactgcctcc 314
                | |||||||| |||||
Sbjct: 25973718 caagagcactccctcc 25973703



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                            
Query: 408      ctgcattccacactcaattgagatggttctagaagttgattccccaaaagaagaccattt 467
                |||||| || || ||||| ||||| || ||||||||||||||||||||||| ||   |||
Sbjct: 25973006 ctgcatcccgcattcaatagagatagtcctagaagttgattccccaaaagaggaaacttt 25972947

                                                                            
Query: 468      cgacatccaatagccaagagtgaatgcaacagcatgcagcagagcaacagggagaataag 527
                 || | |||||| ||||| |  || ||| || |||||||||||||||| || |  |||||
Sbjct: 25972946 tgataaccaatacccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataag 25972887

                                                    
Query: 528      ttgagcaccttgagttttcaacacttctgcgacttg 563
                |||| ||||||||| ||||||||| |||| ||||||
Sbjct: 25972886 ttgaccaccttgagctttcaacacctctgagacttg 25972851



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                              
Query: 687      taaaacaacctgaaaagtactgatggccaa 716
                ||||||||||||||||||||||||||||||
Sbjct: 25972404 taaaacaacctgaaaagtactgatggccaa 25972375
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>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0707D10
          Length = 172003

 Score =  129 bits (65), Expect = 1e-26
 Identities = 86/93 (92%)
 Strand = Plus / Minus

                                                                         
Query: 318   cgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgctt 377
             ||||||||| ||||||||||||||||| |||||||| || || || || |||||||||||
Sbjct: 69640 cgccatgcatacaacactgacagcagatggaacagctacgagtggattcgtgaagtgctt 69581

                                              
Query: 378   ttgggcaagtaaaaatccaagtgcagaactctg 410
             |||||||||||||||||||||||||||||||||
Sbjct: 69580 ttgggcaagtaaaaatccaagtgcagaactctg 69548



 Score =  103 bits (52), Expect = 8e-19
 Identities = 82/92 (89%)
 Strand = Plus / Minus

                                                                         
Query: 574   ctagcacaaagcaaggtggtgaggatgacccctatcagtggtgttatggagataatccgc 633
             |||||||||||||| ||||||||||  ||||| |||| |||||||||||| ||||| |||
Sbjct: 68675 ctagcacaaagcaaagtggtgaggagaaccccaatcaatggtgttatggatataatgcgc 68616

                                             
Query: 634   tcggtaaacttgggaaaatactcatgtgccaa 665
             || |||||||| |||||||||||||| |||||
Sbjct: 68615 tcagtaaacttaggaaaatactcatgcgccaa 68584



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 69/76 (90%)
 Strand = Plus / Minus

                                                                         
Query: 239   ttcattccttgaaatcgtccttgtcatctgctggaaggcctctgtttctccagaaaactg 298
             ||||||||||||||||||| ||||||| ||||||||| |||||||| ||||| |||||||
Sbjct: 69845 ttcattccttgaaatcgtctttgtcatttgctggaagccctctgttcctccaaaaaactg 69786

                             
Query: 299   cgagagcactgcctcc 314
             | |||||||| |||||
Sbjct: 69785 caagagcactccctcc 69770



 Score = 87.7 bits (44), Expect = 5e-14
 Identities = 128/156 (82%)
 Strand = Plus / Minus

                                                                         
Query: 408   ctgcattccacactcaattgagatggttctagaagttgattccccaaaagaagaccattt 467
             |||||| || || ||||| ||||| || ||||||||||||||||||||||| ||   |||
Sbjct: 69073 ctgcatcccgcattcaatagagatagtcctagaagttgattccccaaaagaggaaacttt 69014

                                                                         
Query: 468   cgacatccaatagccaagagtgaatgcaacagcatgcagcagagcaacagggagaataag 527
              || | |||||| ||||| |  || ||| || |||||||||||||||| || |  |||||
Sbjct: 69013 tgataaccaatacccaagtgcaaaggcagcaacatgcagcagagcaacgggaattataag 68954

                                                 
Query: 528   ttgagcaccttgagttttcaacacttctgcgacttg 563
             |||| ||||||||| ||||||||| |||| ||||||
Sbjct: 68953 ttgaccaccttgagctttcaacacctctgagacttg 68918



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                           
Query: 687   taaaacaacctgaaaagtactgatggccaa 716
             ||||||||||||||||||||||||||||||
Sbjct: 68471 taaaacaacctgaaaagtactgatggccaa 68442
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>gb|AC005168.3| Arabidopsis thaliana chromosome 2 clone F12C20 map B68, complete
             sequence
          Length = 87978

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 82/94 (87%)
 Strand = Plus / Minus

                                                                         
Query: 318   cgccatgcacacaacactgacagcagaaggaacagcaacaagagggtttgtgaagtgctt 377
             |||||| || ||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 29215 cgccatacagacaacactgactgcagaaggaacagcaactagagggtttgtgaaatgctt 29156

                                               
Query: 378   ttgggcaagtaaaaatccaagtgcagaactctgc 411
             ||| ||||| || || || || || |||||||||
Sbjct: 29155 ttgtgcaagcaagaacccgagcgctgaactctgc 29122



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 80/98 (81%)
 Strand = Plus / Minus

                                                                         
Query: 472   atccaatagccaagagtgaatgcaacagcatgcagcagagcaacagggagaataagttga 531
             ||||||||||||| ||  || ||  ||||||| || || || || ||||| |||||||||
Sbjct: 28973 atccaatagccaatagcaaaggctgcagcatgaaggagtgccaccgggagtataagttga 28914

                                                   
Query: 532   gcaccttgagttttcaacacttctgcgacttgcccaat 569
             || ||||| |||||||| || ||||| ||||| |||||
Sbjct: 28913 gctccttgggttttcaaaacatctgcaacttgtccaat 28876
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>emb|BX821429.1|CNS0A9AK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL41ZA08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 540

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 217/275 (78%), Gaps = 7/275 (2%)
 Strand = Plus / Minus

                                                                       
Query: 316 agcgccatgcacacaacactgacagcagaaggaacagcaaca----agagggtttgtgaa 371
           |||||||| || |||||||| || |||||||||||||||||     || | |||||| ||
Sbjct: 299 agcgccatacagacaacactaactgcagaaggaacagcaacttagtagtgtgtttgttaa 240

                                                                       
Query: 372 gtgcttttgggcaagtaaaaatccaagtgcagaactctgcattccacactcaattgagat 431
            |||||||| ||||| || || || || || ||||| ||||||||||| || || || ||
Sbjct: 239 atgcttttgtgcaagcaagaacccgagcgctgaactttgcattccacattctatagaaat 180

                                                                       
Query: 432 ggttctagaagttgattccccaaaagaagaccatttcgacatccaatagccaagagtgaa 491
           ||| |  ||||| || || || |||||| ||   || || ||||||||||||| ||  ||
Sbjct: 179 ggtacgcgaagtggactcgccgaaagaaaac---tttgaaatccaatagccaatagcaaa 123

                                                                       
Query: 492 tgcaacagcatgcagcagagcaacagggagaataagttgagcaccttgagttttcaacac 551
            ||  ||||||| || || || || ||||| ||||||||||| ||||| |||||||| ||
Sbjct: 122 ggctgcagcatgaaggagtgccaccgggagtataagttgagctccttgggttttcaaaac 63

                                              
Query: 552 ttctgcgacttgcccaatagggctagcacaaagca 586
            ||||| ||||| ||||||||||| ||||| ||||
Sbjct: 62  atctgcaacttgtccaatagggctggcacagagca 28
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>gb|AY581831.1| Cynodon dactylon unknown mRNA
          Length = 660

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                       
Query: 649 aaatactcatgtgccaatactccaacgatagtcggtactaaaacaacctgaaaagtactg 708
           |||||||||||||||||||||||||||||||| || | ||  |||||||| || ||||| 
Sbjct: 660 aaatactcatgtgccaatactccaacgatagtgggcattaggacaacctggaatgtactc 601

                   
Query: 709 atggccaa 716
           ||||||||
Sbjct: 600 atggccaa 593
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>gb|AC140916.17| Medicago truncatula clone mth2-12b2, complete sequence
          Length = 133358

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 223   catcatttttgcttcattcatt 244
             ||||||||||||||||||||||
Sbjct: 59800 catcatttttgcttcattcatt 59821
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>emb|BX571774.9| Zebrafish DNA sequence from clone DKEY-250A19 in linkage group 9,
             complete sequence
          Length = 140812

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 490   aatgcaacagcatgcagcagag 511
             ||||||||||||||||||||||
Sbjct: 43131 aatgcaacagcatgcagcagag 43152
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>gb|AC112507.7| Homo sapiens 3 BAC RP11-321C3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 184696

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 326    acacaacactgacagcagaaggaaca 351
              ||||| ||||||||||||||||||||
Sbjct: 161145 acacatcactgacagcagaaggaaca 161170
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>gb|AC096735.3| Homo sapiens BAC clone RP11-135M12 from 4, complete sequence
          Length = 193510

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 228    tttttgcttcattcattccttg 249
              ||||||||||||||||||||||
Sbjct: 113800 tttttgcttcattcattccttg 113779
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>gb|AC159424.1| Trypanosoma brucei chromosome 6 clone RPCI93-26F19, complete sequence
          Length = 101897

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 16395 atcatttttgcttcattcatt 16415
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 16395 atcatttttgcttcattcatt 16415
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>gb|AC079606.6| Trypanosoma brucei chromosome 2 clone RPCI93-3B10, complete sequence
          Length = 160845

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    atcatttttgcttcattcatt 244
              |||||||||||||||||||||
Sbjct: 110253 atcatttttgcttcattcatt 110233



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 88465 atcatttttgcttcattcatt 88445



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 78729 atcatttttgcttcattcatt 78709



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 47748 atcatttttgcttcattcatt 47728
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>gb|AC073246.5| Trypanosoma brucei chromosome 2 clone RPCI93-25N24, complete sequence
          Length = 113329

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 69672 atcatttttgcttcattcatt 69692



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 34036 atcatttttgcttcattcatt 34056
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>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    atcatttttgcttcattcatt 244
              |||||||||||||||||||||
Sbjct: 221480 atcatttttgcttcattcatt 221460



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    atcatttttgcttcattcatt 244
              |||||||||||||||||||||
Sbjct: 185844 atcatttttgcttcattcatt 185824



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 224    atcatttttgcttcattcatt 244
              |||||||||||||||||||||
Sbjct: 110253 atcatttttgcttcattcatt 110233



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 88465 atcatttttgcttcattcatt 88445



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 78729 atcatttttgcttcattcatt 78709



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 47748 atcatttttgcttcattcatt 47728
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>gb|AE002135.1| Ureaplasma parvum serovar 3 str. ATCC 700970 section 36 of 59 of the
            complete genome
          Length = 13084

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 16   agcttatttagaagatgaaaa 36
            |||||||||||||||||||||
Sbjct: 3606 agcttatttagaagatgaaaa 3626
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>ref|XM_841290.1| Trypanosoma brucei TREU927 retrotransposon hot spot protein, RHS4l
            (Tb927.1.120) partial mRNA
          Length = 2571

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  atcatttttgcttcattcatt 244
            |||||||||||||||||||||
Sbjct: 996  atcatttttgcttcattcatt 1016
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>ref|XM_946386.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.340) partial mRNA
          Length = 2577

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  atcatttttgcttcattcatt 244
            |||||||||||||||||||||
Sbjct: 996  atcatttttgcttcattcatt 1016
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>ref|XM_946390.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.450) partial mRNA
          Length = 2574

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  atcatttttgcttcattcatt 244
            |||||||||||||||||||||
Sbjct: 996  atcatttttgcttcattcatt 1016
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>ref|XM_946391.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.470) partial mRNA
          Length = 2583

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  atcatttttgcttcattcatt 244
            |||||||||||||||||||||
Sbjct: 999  atcatttttgcttcattcatt 1019
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>ref|XM_946393.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.560) partial mRNA
          Length = 2538

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  atcatttttgcttcattcatt 244
            |||||||||||||||||||||
Sbjct: 1017 atcatttttgcttcattcatt 1037
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>ref|XM_946404.1| Trypanosoma brucei TREU927 retrotransposon hot spot (RHS) protein
            (Tb927.2.1210) partial mRNA
          Length = 2526

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  atcatttttgcttcattcatt 244
            |||||||||||||||||||||
Sbjct: 1005 atcatttttgcttcattcatt 1025
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>emb|BX248585.1| Blochmannia floridanus complete genome; segment 2/3
          Length = 267050

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 101    ataatcaattatctaaagtaa 121
              |||||||||||||||||||||
Sbjct: 124173 ataatcaattatctaaagtaa 124193
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>emb|AL671259.1|TBH25N7 Trypanosoma brucei 221 VSG expression site BAC
          Length = 123706

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 57058 atcatttttgcttcattcatt 57078
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>emb|AL671256.1|TBN19B2 Trypanosoma brucei VO2 VSG expression site BAC
          Length = 137759

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 94855 atcatttttgcttcattcatt 94875



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 224   atcatttttgcttcattcatt 244
             |||||||||||||||||||||
Sbjct: 30295 atcatttttgcttcattcatt 30315
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>gb|AY046890.1| Trypanosoma brucei RHS4a (RHS4a) gene, complete cds
          Length = 9694

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 224  atcatttttgcttcattcatt 244
            |||||||||||||||||||||
Sbjct: 4445 atcatttttgcttcattcatt 4465
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 65      cccgtacctaaatcattaacaaggg 89
               |||||| ||||||||||||||||||
Sbjct: 2368350 cccgtagctaaatcattaacaaggg 2368374


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,337,588
Number of Sequences: 3902068
Number of extensions: 7337588
Number of successful extensions: 146429
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146201
Number of HSP's gapped (non-prelim): 223
length of query: 731
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 708
effective length of database: 17,143,297,704
effective search space: 12137454774432
effective search space used: 12137454774432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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