| Clone Name | rbags14f16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08, complete sequence Length = 173088 Score = 389 bits (196), Expect = e-105 Identities = 277/304 (91%) Strand = Plus / Plus Query: 328 gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 387 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 32453 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 32512 Query: 388 tgcgatgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacatt 447 |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 32513 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactggttgccaaaaaacatt 32572 Query: 448 aggtgagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataat 507 |||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||| Sbjct: 32573 tggtgagcagctgtggttcataaagcgagctatgtttccagttcgttttgcactgataat 32632 Query: 508 tattggcaactgcttagatgattcatttaagtcagaaagactaggttcacccagtaattc 567 |||||||| ||||||| || ||| || ||||||||||||| ||||||||||||||||| Sbjct: 32633 tattggcagttgcttaggtgtctcacttgagtcagaaagactgggttcacccagtaattc 32692 Query: 568 tggtgcatagttccatcttaagttctgctccgaaggaggggtctcaaagatataatcatc 627 ||||||||||||||||||||| |||||||| |||| || ||||||||||| |||||||| Sbjct: 32693 tggtgcatagttccatcttaaattctgctcagaagacggtgtctcaaagatgtaatcatc 32752 Query: 628 ttct 631 |||| Sbjct: 32753 ttct 32756 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 255 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 314 |||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| Sbjct: 32359 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 32418 Query: 315 accctgaatt 324 | || ||||| Sbjct: 32419 atccagaatt 32428
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 389 bits (196), Expect = e-105 Identities = 277/304 (91%) Strand = Plus / Plus Query: 328 gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 387 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 143971 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 144030 Query: 388 tgcgatgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacatt 447 |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 144031 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactggttgccaaaaaacatt 144090 Query: 448 aggtgagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataat 507 |||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||| Sbjct: 144091 tggtgagcagctgtggttcataaagcgagctatgtttccagttcgttttgcactgataat 144150 Query: 508 tattggcaactgcttagatgattcatttaagtcagaaagactaggttcacccagtaattc 567 |||||||| ||||||| || ||| || ||||||||||||| ||||||||||||||||| Sbjct: 144151 tattggcagttgcttaggtgtctcacttgagtcagaaagactgggttcacccagtaattc 144210 Query: 568 tggtgcatagttccatcttaagttctgctccgaaggaggggtctcaaagatataatcatc 627 ||||||||||||||||||||| |||||||| |||| || ||||||||||| |||||||| Sbjct: 144211 tggtgcatagttccatcttaaattctgctcagaagacggtgtctcaaagatgtaatcatc 144270 Query: 628 ttct 631 |||| Sbjct: 144271 ttct 144274 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 255 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 314 |||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| Sbjct: 143877 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 143936 Query: 315 accctgaatt 324 | || ||||| Sbjct: 143937 atccagaatt 143946
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 389 bits (196), Expect = e-105 Identities = 277/304 (91%) Strand = Plus / Minus Query: 328 gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 387 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 22308845 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 22308786 Query: 388 tgcgatgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacatt 447 |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 22308785 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactggttgccaaaaaacatt 22308726 Query: 448 aggtgagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataat 507 |||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||| Sbjct: 22308725 tggtgagcagctgtggttcataaagcgagctatgtttccagttcgttttgcactgataat 22308666 Query: 508 tattggcaactgcttagatgattcatttaagtcagaaagactaggttcacccagtaattc 567 |||||||| ||||||| || ||| || ||||||||||||| ||||||||||||||||| Sbjct: 22308665 tattggcagttgcttaggtgtctcacttgagtcagaaagactgggttcacccagtaattc 22308606 Query: 568 tggtgcatagttccatcttaagttctgctccgaaggaggggtctcaaagatataatcatc 627 ||||||||||||||||||||| |||||||| |||| || ||||||||||| |||||||| Sbjct: 22308605 tggtgcatagttccatcttaaattctgctcagaagacggtgtctcaaagatgtaatcatc 22308546 Query: 628 ttct 631 |||| Sbjct: 22308545 ttct 22308542 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 255 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 314 |||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| Sbjct: 22308939 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 22308880 Query: 315 accctgaatt 324 | || ||||| Sbjct: 22308879 atccagaatt 22308870
>dbj|AK102379.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092A08, full insert sequence Length = 3270 Score = 389 bits (196), Expect = e-105 Identities = 277/304 (91%) Strand = Plus / Minus Query: 328 gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 387 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 2741 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 2682 Query: 388 tgcgatgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacatt 447 |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 2681 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactggttgccaaaaaacatt 2622 Query: 448 aggtgagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataat 507 |||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||| Sbjct: 2621 tggtgagcagctgtggttcataaagcgagctatgtttccagttcgttttgcactgataat 2562 Query: 508 tattggcaactgcttagatgattcatttaagtcagaaagactaggttcacccagtaattc 567 |||||||| ||||||| || ||| || ||||||||||||| ||||||||||||||||| Sbjct: 2561 tattggcagttgcttaggtgtctcacttgagtcagaaagactgggttcacccagtaattc 2502 Query: 568 tggtgcatagttccatcttaagttctgctccgaaggaggggtctcaaagatataatcatc 627 ||||||||||||||||||||| |||||||| |||| || ||||||||||| |||||||| Sbjct: 2501 tggtgcatagttccatcttaaattctgctcagaagacggtgtctcaaagatgtaatcatc 2442 Query: 628 ttct 631 |||| Sbjct: 2441 ttct 2438 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 255 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 314 |||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| Sbjct: 2835 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 2776 Query: 315 accctgaatt 324 | || ||||| Sbjct: 2775 atccagaatt 2766
>dbj|AK059336.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-A12, full insert sequence Length = 1858 Score = 389 bits (196), Expect = e-105 Identities = 277/304 (91%) Strand = Plus / Minus Query: 328 gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 387 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 1449 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 1390 Query: 388 tgcgatgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacatt 447 |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 1389 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactggttgccaaaaaacatt 1330 Query: 448 aggtgagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataat 507 |||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||| Sbjct: 1329 tggtgagcagctgtggttcataaagcgagctatgtttccagttcgttttgcactgataat 1270 Query: 508 tattggcaactgcttagatgattcatttaagtcagaaagactaggttcacccagtaattc 567 |||||||| ||||||| || ||| || ||||||||||||| ||||||||||||||||| Sbjct: 1269 tattggcagttgcttaggtgtctcacttgagtcagaaagactgggttcacccagtaattc 1210 Query: 568 tggtgcatagttccatcttaagttctgctccgaaggaggggtctcaaagatataatcatc 627 ||||||||||||||||||||| |||||||| |||| || ||||||||||| |||||||| Sbjct: 1209 tggtgcatagttccatcttaaattctgctcagaagacggtgtctcaaagatgtaatcatc 1150 Query: 628 ttct 631 |||| Sbjct: 1149 ttct 1146
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 389 bits (196), Expect = e-105 Identities = 277/304 (91%) Strand = Plus / Minus Query: 328 gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 387 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 22618756 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 22618697 Query: 388 tgcgatgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacatt 447 |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 22618696 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactggttgccaaaaaacatt 22618637 Query: 448 aggtgagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataat 507 |||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||| Sbjct: 22618636 tggtgagcagctgtggttcataaagcgagctatgtttccagttcgttttgcactgataat 22618577 Query: 508 tattggcaactgcttagatgattcatttaagtcagaaagactaggttcacccagtaattc 567 |||||||| ||||||| || ||| || ||||||||||||| ||||||||||||||||| Sbjct: 22618576 tattggcagttgcttaggtgtctcacttgagtcagaaagactgggttcacccagtaattc 22618517 Query: 568 tggtgcatagttccatcttaagttctgctccgaaggaggggtctcaaagatataatcatc 627 ||||||||||||||||||||| |||||||| |||| || ||||||||||| |||||||| Sbjct: 22618516 tggtgcatagttccatcttaaattctgctcagaagacggtgtctcaaagatgtaatcatc 22618457 Query: 628 ttct 631 |||| Sbjct: 22618456 ttct 22618453 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 255 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 314 |||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| Sbjct: 22618850 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 22618791 Query: 315 accctgaatt 324 | || ||||| Sbjct: 22618790 atccagaatt 22618781
>gb|AF344453.1|AF344453 Oryza sativa SET1 (SET1) mRNA, complete cds Length = 2982 Score = 377 bits (190), Expect = e-101 Identities = 276/304 (90%), Gaps = 3/304 (0%) Strand = Plus / Minus Query: 328 gctctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaa 387 ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct: 2421 gctctgaccataatcatatgtaagctctgtcatcggaggaatatgcttgattgcaaagaa 2362 Query: 388 tgcgatgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacatt 447 |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||||||||| Sbjct: 2361 tgcgatatgtggatatccctcgtcaccatgatcatacaaaactggttgccaaaaaacatt 2302 Query: 448 aggtgagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataat 507 |||||||||||||||||||| |||||||||||||| ||||| ||||||||| ||||| Sbjct: 2301 tggtgagcagctgtggttcataaagcgagctatgtttccagttcgttttgcactgataat 2242 Query: 508 tattggcaactgcttagatgattcatttaagtcagaaagactaggttcacccagtaattc 567 |||||||| ||||||| || ||| || ||||||||||||| ||||||||||||||||| Sbjct: 2241 tattggcagttgcttaggtgtctcacttgagtcagaaagactgggttcacccagtaattc 2182 Query: 568 tggtgcatagttccatcttaagttctgctccgaaggaggggtctcaaagatataatcatc 627 ||||||||||||||||||||| |||||||| || ||| ||||||||||| |||||||| Sbjct: 2181 tggtgcatagttccatcttaaattctgctc---agaaggtgtctcaaagatgtaatcatc 2125 Query: 628 ttct 631 |||| Sbjct: 2124 ttct 2121 Score = 83.8 bits (42), Expect = 7e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 255 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccgac 314 |||||||||||||||| |||||||||||||||||||||||||| |||| ||| |||||| Sbjct: 2515 tttagccaaaggaacctctgcacttgcgagaccaacataagcagtttttggacttccgac 2456 Query: 315 accctgaatt 324 | || ||||| Sbjct: 2455 atccagaatt 2446
>gb|AY104411.1| Zea mays PCO124128 mRNA sequence Length = 1300 Score = 351 bits (177), Expect = 2e-93 Identities = 270/301 (89%) Strand = Plus / Minus Query: 330 tctgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatg 389 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 772 tctgaccataatcataggtaagctctgtcattggaggaatatgcttaattgcaaagaatg 713 Query: 390 cgatgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattag 449 | || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct: 712 caatatgtggatatccctcatcaccatgatcatacagaactggttgccaaaacacattag 653 Query: 450 gtgagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataatta 509 ||||||||||||||||||| |||||||||||||| || || ||||||||| || | || Sbjct: 652 gtgagcagctgtggttcataaagcgagctatgttgccggttcgttttgcactgatgacta 593 Query: 510 ttggcaactgcttagatgattcatttaagtcagaaagactaggttcacccagtaattctg 569 | |||| |||||| | || ||||||| |||||||||||||||| |||||||| ||||| | Sbjct: 592 taggcagctgctttggtgtttcatttgagtcagaaagactaggctcacccagcaattccg 533 Query: 570 gtgcatagttccatcttaagttctgctccgaaggaggggtctcaaagatataatcatctt 629 ||||||||||||||||||| |||||||| |||||| |||||||| || || ||||||| Sbjct: 532 gtgcatagttccatcttaaattctgctctaaaggagaagtctcaaatatgtagtcatctt 473 Query: 630 c 630 | Sbjct: 472 c 472 Score = 69.9 bits (35), Expect = 1e-08 Identities = 53/59 (89%) Strand = Plus / Minus Query: 255 tttagccaaaggaacccctgcacttgcgagaccaacataagcaacttttagacctccga 313 |||||||||||||||| || ||||| | |||||||||||||||||||||||| ||||| Sbjct: 871 tttagccaaaggaacctctacacttcggggaccaacataagcaacttttagacttccga 813
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Minus Query: 332 tgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcg 391 |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||| Sbjct: 11536905 tgaccataatcataagtaagctctgtcatgggaggaatgttcttgattgcaaagaatgca 11536846 Query: 392 atgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggt 451 || ||||| || |||||||||||||| ||||||| ||||| || | ||||||||||| Sbjct: 11536845 atatgtgggtagccctcatcaccatgatcatacatcactggctggtagaaaacattagga 11536786 Query: 452 gagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataattatt 511 ||||| || || |||||||| ||||||| ||| ||||| | ||||||||||| ||| || Sbjct: 11536785 gagcaactatgattcatgaaacgagctacgttgccagtttgctttgcactaatgattgtt 11536726 Query: 512 ggcaact 518 ||||||| Sbjct: 11536725 ggcaact 11536719
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042L15, from chromosome 3, complete sequence Length = 172475 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Minus Query: 332 tgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcg 391 |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||| Sbjct: 87477 tgaccataatcataagtaagctctgtcatgggaggaatgttcttgattgcaaagaatgca 87418 Query: 392 atgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggt 451 || ||||| || |||||||||||||| ||||||| ||||| || | ||||||||||| Sbjct: 87417 atatgtgggtagccctcatcaccatgatcatacatcactggctggtagaaaacattagga 87358 Query: 452 gagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataattatt 511 ||||| || || |||||||| ||||||| ||| ||||| | ||||||||||| ||| || Sbjct: 87357 gagcaactatgattcatgaaacgagctacgttgccagtttgctttgcactaatgattgtt 87298 Query: 512 ggcaact 518 ||||||| Sbjct: 87297 ggcaact 87291
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 149 bits (75), Expect = 1e-32 Identities = 159/187 (85%) Strand = Plus / Minus Query: 332 tgaccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcg 391 |||||||||||||| |||||||||||||| |||||||| | ||| |||||||||||||| Sbjct: 11533668 tgaccataatcataagtaagctctgtcatgggaggaatgttcttgattgcaaagaatgca 11533609 Query: 392 atgtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggt 451 || ||||| || |||||||||||||| ||||||| ||||| || | ||||||||||| Sbjct: 11533608 atatgtgggtagccctcatcaccatgatcatacatcactggctggtagaaaacattagga 11533549 Query: 452 gagcagctgtggttcatgaagcgagctatgttaccagtatattttgcactaataattatt 511 ||||| || || |||||||| ||||||| ||| ||||| | ||||||||||| ||| || Sbjct: 11533548 gagcaactatgattcatgaaacgagctacgttgccagtttgctttgcactaatgattgtt 11533489 Query: 512 ggcaact 518 ||||||| Sbjct: 11533488 ggcaact 11533482
>gb|AY596552.1| Saccharum officinarum clone SCCCRZ2001G10, complete sequence Length = 2562 Score = 83.8 bits (42), Expect = 7e-13 Identities = 114/138 (82%) Strand = Plus / Plus Query: 334 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgat 393 |||||| ||||| || || |||||||| || ||||||||||| | ||||||||| || Sbjct: 533 accatagtcataagtcagttctgtcatgggtggaatatgcttcagtgcaaagaacattat 592 Query: 394 gtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggtga 453 ||||| | ||| ||||| ||||| ||||| ||||||||||||| || ||||| ||||| Sbjct: 593 atgtgggtgtccatcatctccatgatcatattgaactggttgccagaagacattgggtga 652 Query: 454 gcagctgtggttcatgaa 471 ||| |||||||||||||| Sbjct: 653 gcaactgtggttcatgaa 670
>gb|AY093419.1| Zea mays SET domain protein 105 (set105) mRNA, complete cds Length = 2487 Score = 75.8 bits (38), Expect = 2e-10 Identities = 113/138 (81%) Strand = Plus / Minus Query: 334 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgat 393 |||||| ||||| || || |||||||| || ||||||||||| | ||||||||| || Sbjct: 2070 accatagtcataagtcagttctgtcatgggtggaatatgcttcagtgcaaagaacattat 2011 Query: 394 gtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggtga 453 || || | ||| ||||| || || ||||| |||||||||||||||| ||||| ||||| Sbjct: 2010 atgcgggtgtccatcatctccgtgatcatattgaactggttgccaaaagacattgggtga 1951 Query: 454 gcagctgtggttcatgaa 471 ||| |||||||||||||| Sbjct: 1950 gcaactgtggttcatgaa 1933
>gb|AY112212.1| Zea mays CL3507_2 mRNA sequence Length = 824 Score = 75.8 bits (38), Expect = 2e-10 Identities = 113/138 (81%) Strand = Plus / Plus Query: 334 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgat 393 |||||| ||||| || || |||||||| || ||||||||||| | ||||||||| || Sbjct: 479 accatagtcataagtcagttctgtcatgggtggaatatgcttcagtgcaaagaacattat 538 Query: 394 gtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggtga 453 || || | ||| ||||| || || ||||| |||||||||||||||| ||||| ||||| Sbjct: 539 atgcgggtgtccatcatctccgtgatcatattgaactggttgccaaaagacattgggtga 598 Query: 454 gcagctgtggttcatgaa 471 ||| |||||||||||||| Sbjct: 599 gcaactgtggttcatgaa 616
>gb|AY187718.2| Zea mays SET domain protein SDG111 mRNA, complete cds Length = 2413 Score = 67.9 bits (34), Expect = 4e-08 Identities = 112/138 (81%) Strand = Plus / Minus Query: 334 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgat 393 |||||| ||||| || || |||||||| || |||||||| || | ||||||||| || Sbjct: 1948 accatagtcataagtcagttctgtcatgggtggaatatgtttcagtgcaaagaacattat 1889 Query: 394 gtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggtga 453 ||||| | ||| ||||| ||||| ||||| |||| |||||||| || ||||| ||||| Sbjct: 1888 atgtgggtgtccatcatctccatgatcatattgaacaggttgccagaagacattgggtga 1829 Query: 454 gcagctgtggttcatgaa 471 ||| |||||||||||||| Sbjct: 1828 gcaactgtggttcatgaa 1811
>gb|BT024023.1| Zea mays clone EL01N0414B01 mRNA sequence Length = 1607 Score = 67.9 bits (34), Expect = 4e-08 Identities = 112/138 (81%) Strand = Plus / Minus Query: 334 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgat 393 |||||| ||||| || || |||||||| || |||||||| || | ||||||||| || Sbjct: 1159 accatagtcataagtcagttctgtcatgggtggaatatgtttcagtgcaaagaacattat 1100 Query: 394 gtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggtga 453 ||||| | ||| ||||| ||||| ||||| |||| |||||||| || ||||| ||||| Sbjct: 1099 atgtgggtgtccatcatctccatgatcatattgaaccggttgccagaagacattgggtga 1040 Query: 454 gcagctgtggttcatgaa 471 ||| |||||||||||||| Sbjct: 1039 gcaactgtggttcatgaa 1022
>gb|AY109913.1| Zea mays CL3507_1 mRNA sequence Length = 1269 Score = 67.9 bits (34), Expect = 4e-08 Identities = 112/138 (81%) Strand = Plus / Plus Query: 334 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgat 393 |||||| ||||| || || |||||||| || |||||||| || | ||||||||| || Sbjct: 462 accatagtcataagtcagttctgtcatgggtggaatatgtttcagtgcaaagaacattat 521 Query: 394 gtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggtga 453 ||||| | ||| ||||| ||||| ||||| |||| |||||||| || ||||| ||||| Sbjct: 522 atgtgggtgtccatcatctccatgatcatattgaacaggttgccagaagacattgggtga 581 Query: 454 gcagctgtggttcatgaa 471 ||| |||||||||||||| Sbjct: 582 gcaactgtggttcatgaa 599
>ref|NM_191045.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2211 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 394 ||||| ||||| || || |||||||| |||||||||||||| | ||| ||||| |||| Sbjct: 2123 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 2064 Query: 395 tgtggatatccctcatcaccatggtcatacagaactggttgcca 438 |||||||| || || || ||||||||| | ||||||||||||| Sbjct: 2063 tgtggataaccatcctctccatggtcaaattgaactggttgcca 2020
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 394 ||||| ||||| || || |||||||| |||||||||||||| | ||| ||||| |||| Sbjct: 34476671 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 34476612 Query: 395 tgtggatatccctcatcaccatggtcatacagaactggttgcca 438 |||||||| || || || ||||||||| | ||||||||||||| Sbjct: 34476611 tgtggataaccatcctctccatggtcaaattgaactggttgcca 34476568
>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0468B07 Length = 169071 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 394 ||||| ||||| || || |||||||| |||||||||||||| | ||| ||||| |||| Sbjct: 159015 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 158956 Query: 395 tgtggatatccctcatcaccatggtcatacagaactggttgcca 438 |||||||| || || || ||||||||| | ||||||||||||| Sbjct: 158955 tgtggataaccatcctctccatggtcaaattgaactggttgcca 158912
>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0425G02 Length = 155432 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 394 ||||| ||||| || || |||||||| |||||||||||||| | ||| ||||| |||| Sbjct: 52390 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 52331 Query: 395 tgtggatatccctcatcaccatggtcatacagaactggttgcca 438 |||||||| || || || ||||||||| | ||||||||||||| Sbjct: 52330 tgtggataaccatcctctccatggtcaaattgaactggttgcca 52287
>dbj|AK065227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H03, full insert sequence Length = 2926 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgatg 394 ||||| ||||| || || |||||||| |||||||||||||| | ||| ||||| |||| Sbjct: 2426 ccatagtcataagtcagttctgtcatgggaggaatatgcttcagtgcgaagaacatgatg 2367 Query: 395 tgtggatatccctcatcaccatggtcatacagaactggttgcca 438 |||||||| || || || ||||||||| | ||||||||||||| Sbjct: 2366 tgtggataaccatcctctccatggtcaaattgaactggttgcca 2323
>ref|NM_105968.2| Arabidopsis thaliana SUVH3 (SU(VAR)3-9 HOMOLOG 3) AT1G73100 (SUVH3) mRNA, complete cds Length = 2384 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 427 aactggttgccaaaaaacattaggtgagcagctgtggttcatgaagcgagcta 479 |||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||| Sbjct: 1992 aactggctgccaaaaaacgttaggagagcaactatggttcatgaaccgagcta 1940
>gb|AY099620.1| Arabidopsis thaliana unknown protein (At1g73100) mRNA, complete cds Length = 2383 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 427 aactggttgccaaaaaacattaggtgagcagctgtggttcatgaagcgagcta 479 |||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||| Sbjct: 1992 aactggctgccaaaaaacgttaggagagcaactatggttcatgaaccgagcta 1940
>gb|AF344446.2|AF344446 Arabidopsis thaliana SUVH3 (SUVH3) mRNA, complete cds Length = 2325 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 427 aactggttgccaaaaaacattaggtgagcagctgtggttcatgaagcgagcta 479 |||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||| Sbjct: 1970 aactggctgccaaaaaacgttaggagagcaactatggttcatgaaccgagcta 1918
>gb|BT002137.1| Arabidopsis thaliana unknown protein (At1g73100) mRNA, complete cds Length = 2113 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 427 aactggttgccaaaaaacattaggtgagcagctgtggttcatgaagcgagcta 479 |||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||| Sbjct: 1821 aactggctgccaaaaaacgttaggagagcaactatggttcatgaaccgagcta 1769
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 427 aactggttgccaaaaaacattaggtgagcagctgtggttcatgaagcgagcta 479 |||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||| Sbjct: 96362 aactggctgccaaaaaacgttaggagagcaactatggttcatgaaccgagcta 96310
>ref|XM_475460.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2019 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 353 tctgtcattggaggaatatgcttaattgcaaagaatgcgatgtgtggatatccctcatca 412 |||||||| |||||||| ||||| | ||||||||| ||| ||||| | | ||||| Sbjct: 1919 tctgtcatgggaggaatgtgcttcagtgcaaagaacatgatatgtgggtggctgtcatct 1860 Query: 413 ccatggtcatacagaactggttgccaaaaaacattaggtgagcagctgtggttcatgaa 471 |||||||||| | ||||||| ||||| |||||||| || || || || ||||||||||| Sbjct: 1859 ccatggtcatgctgaactggctgccagaaaacattcggggaacaactatggttcatgaa 1801
>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06, complete sequence Length = 187651 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Plus Query: 353 tctgtcattggaggaatatgcttaattgcaaagaatgcgatgtgtggatatccctcatca 412 |||||||| |||||||| ||||| | ||||||||| ||| ||||| | | ||||| Sbjct: 40274 tctgtcatgggaggaatgtgcttcagtgcaaagaacatgatatgtgggtggctgtcatct 40333 Query: 413 ccatggtcatacagaactggttgccaaaaaacattaggtgagcagctgtggttcatgaa 471 |||||||||| | ||||||| ||||| |||||||| || || || || ||||||||||| Sbjct: 40334 ccatggtcatgctgaactggctgccagaaaacattcggggaacaactatggttcatgaa 40392
>gb|AY459341.1| Oryza sativa (japonica cultivar-group) clone CL031105.6 R2R3-MYB gene region Length = 58956 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 353 tctgtcattggaggaatatgcttaattgcaaagaatgcgatgtgtggatatccctcatca 412 |||||||| |||||||| ||||| | ||||||||| ||| ||||| | | ||||| Sbjct: 40624 tctgtcatgggaggaatgtgcttcagtgcaaagaacatgatatgtgggtggctgtcatct 40565 Query: 413 ccatggtcatacagaactggttgccaaaaaacattaggtgagcagctgtggttcatgaa 471 |||||||||| | ||||||| ||||| |||||||| || || || || ||||||||||| Sbjct: 40564 ccatggtcatgctgaactggctgccagaaaacattcggggaacaactatggttcatgaa 40506
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Plus Query: 353 tctgtcattggaggaatatgcttaattgcaaagaatgcgatgtgtggatatccctcatca 412 |||||||| |||||||| ||||| | ||||||||| ||| ||||| | | ||||| Sbjct: 23971785 tctgtcatgggaggaatgtgcttcagtgcaaagaacatgatatgtgggtggctgtcatct 23971844 Query: 413 ccatggtcatacagaactggttgccaaaaaacattaggtgagcagctgtggttcatgaa 471 |||||||||| | ||||||| ||||| |||||||| || || || || ||||||||||| Sbjct: 23971845 ccatggtcatgctgaactggctgccagaaaacattcggggaacaactatggttcatgaa 23971903
>dbj|AK069035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004N15, full insert sequence Length = 2721 Score = 54.0 bits (27), Expect = 6e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 353 tctgtcattggaggaatatgcttaattgcaaagaatgcgatgtgtggatatccctcatca 412 |||||||| |||||||| ||||| | ||||||||| ||| ||||| | | ||||| Sbjct: 2198 tctgtcatgggaggaatgtgcttcagtgcaaagaacatgatatgtgggtggctgtcatct 2139 Query: 413 ccatggtcatacagaactggttgccaaaaaacattaggtgagcagctgtggttcatgaa 471 |||||||||| | ||||||| ||||| |||||||| || || || || ||||||||||| Sbjct: 2138 ccatggtcatgctgaactggctgccagaaaacattcggggaacaactatggttcatgaa 2080
>ref|NM_101640.1| Arabidopsis thaliana SUVH7 (SU(VAR)3-9 HOMOLOG 7); histone-lysine N-methyltransferase/ zinc ion binding AT1G17770 (SUVH7) mRNA, complete cds Length = 2082 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 384 ||||| |||||||| | ||||||||| |||||||||||||| || ||||| Sbjct: 1979 ccatagtcatatgttaactctgtcatcggaggaatatgcttcatagcaaa 1930
>ref|NM_128034.2| Arabidopsis thaliana SDG21 (SET DOMAIN GROUP 21) AT2G24740 (SDG21) mRNA, complete cds Length = 2268 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 384 ||||| |||||||| | |||||||||||||||||| ||||| || ||||| Sbjct: 2168 ccatagtcatatgttaactctgtcattggaggaatgtgcttcatcgcaaa 2119
>gb|AC007266.5| Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence Length = 66237 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 384 ||||| |||||||| | |||||||||||||||||| ||||| || ||||| Sbjct: 26691 ccatagtcatatgttaactctgtcattggaggaatgtgcttcatcgcaaa 26740
>gb|AF344451.1|AF344451 Arabidopsis thaliana SUVH8 (SUVH8) gene, complete cds Length = 2268 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 384 ||||| |||||||| | |||||||||||||||||| ||||| || ||||| Sbjct: 2168 ccatagtcatatgttaactctgtcattggaggaatgtgcttcatcgcaaa 2119
>gb|AF344450.1|AF344450 Arabidopsis thaliana SUVH7 (SUVH7) mRNA, complete cds Length = 2082 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 384 ||||| |||||||| | ||||||||| |||||||||||||| || ||||| Sbjct: 1979 ccatagtcatatgttaactctgtcatcggaggaatatgcttcatagcaaa 1930
>gb|AC034106.4|F2H15 Sequence of BAC F2H15 from Arabidopsis thaliana chromosome 1, complete sequence Length = 75133 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 335 ccataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaa 384 ||||| |||||||| | ||||||||| |||||||||||||| || ||||| Sbjct: 3730 ccatagtcatatgttaactctgtcatcggaggaatatgcttcatagcaaa 3681
>emb|CR847981.15| Zebrafish DNA sequence from clone CH211-195H23 in linkage group 15, complete sequence Length = 197506 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 376 aattgcaaagaatgcgatgtgtg 398 ||||||||||||||||||||||| Sbjct: 174104 aattgcaaagaatgcgatgtgtg 174126
>gb|BC093421.1| Danio rerio similar to Wolf-Hirschhorn syndrome candidate 1 protein isoform 1, mRNA (cDNA clone IMAGE:7158283), partial cds Length = 1705 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 454 gcagctgtggttcatgaagcgag 476 ||||||||||||||||||||||| Sbjct: 284 gcagctgtggttcatgaagcgag 262
>ref|XM_694290.1| PREDICTED: Danio rerio similar to Wolf-Hirschhorn syndrome candidate 1 protein isoform 1 (LOC570773), mRNA Length = 2140 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 454 gcagctgtggttcatgaagcgag 476 ||||||||||||||||||||||| Sbjct: 758 gcagctgtggttcatgaagcgag 736
>ref|XM_680116.1| PREDICTED: Danio rerio similar to Wolf-Hirschhorn syndrome candidate 1 protein isoform 1 (LOC557114), mRNA Length = 5337 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 454 gcagctgtggttcatgaagcgag 476 ||||||||||||||||||||||| Sbjct: 3954 gcagctgtggttcatgaagcgag 3932
>emb|BX119973.7| Zebrafish DNA sequence from clone RP71-77D7 in linkage group 13, complete sequence Length = 182073 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 454 gcagctgtggttcatgaagcgag 476 ||||||||||||||||||||||| Sbjct: 143907 gcagctgtggttcatgaagcgag 143885
>emb|CT573111.9| Zebrafish DNA sequence from clone CH211-233A24 in linkage group 13, complete sequence Length = 77487 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 454 gcagctgtggttcatgaagcgag 476 ||||||||||||||||||||||| Sbjct: 60556 gcagctgtggttcatgaagcgag 60578
>ref|NM_180436.1| Arabidopsis thaliana SUVH1 (SU(VAR)3-9 HOMOLOG 1) AT5G04940 (SUVH1) transcript variant AT5G04940.2 mRNA, complete cds Length = 2740 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 434 tgccaaaaaacattaggtgagcagctgtggttcatgaa 471 ||||| ||||||||||||||||| || || |||||||| Sbjct: 2179 tgccagaaaacattaggtgagcaactatgattcatgaa 2142
>ref|NM_120576.1| Arabidopsis thaliana SUVH1 (SU(VAR)3-9 HOMOLOG 1) AT5G04940 (SUVH1) transcript variant AT5G04940.1 mRNA, complete cds Length = 2824 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 434 tgccaaaaaacattaggtgagcagctgtggttcatgaa 471 ||||| ||||||||||||||||| || || |||||||| Sbjct: 2179 tgccagaaaacattaggtgagcaactatgattcatgaa 2142
>gb|AF545813.1| Zea mays SET domain protein 113 (sdg113) mRNA, complete cds Length = 2428 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 334 accataatcatatgtaagctctgtcattggaggaatatgctt 375 |||||| ||||| || | ||||||||| |||||||||||||| Sbjct: 2254 accatagtcataagtcaactctgtcatgggaggaatatgctt 2213
>gb|AY634575.1| Triticum aestivum cultivar PI-94640 SET domain protein gene, complete cds Length = 2259 Score = 44.1 bits (22), Expect = 0.59 Identities = 109/138 (78%) Strand = Plus / Minus Query: 334 accataatcatatgtaagctctgtcattggaggaatatgcttaattgcaaagaatgcgat 393 |||||| ||||| || ||||||||||| ||||| || ||||| | |||||||| ||| Sbjct: 2148 accatagtcataagtcagctctgtcatgggagggatgtgctttagcgcaaagaacatgat 2089 Query: 394 gtgtggatatccctcatcaccatggtcatacagaactggttgccaaaaaacattaggtga 453 ||||| | || ||||| ||||||||| || ||||||| ||||| || | ||||| || Sbjct: 2088 atgtgggtgaccgtcatctccatggtcaaactgaactggctgccagaaggcgttagggga 2029 Query: 454 gcagctgtggttcatgaa 471 ||| || || |||||||| Sbjct: 2028 gcaactatgattcatgaa 2011
>gb|AF344444.1|AF344444 Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds Length = 2824 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 434 tgccaaaaaacattaggtgagcagctgtggttcatgaa 471 ||||| ||||||||||||||||| || || |||||||| Sbjct: 2179 tgccagaaaacattaggtgagcaactatgattcatgaa 2142
>dbj|AB005245.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13 Length = 86630 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Plus Query: 434 tgccaaaaaacattaggtgagcagctgtggttcatgaa 471 ||||| ||||||||||||||||| || || |||||||| Sbjct: 22040 tgccagaaaacattaggtgagcaactatgattcatgaa 22077
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 508 tattggcaactgcttagatga 528 ||||||||||||||||||||| Sbjct: 972818 tattggcaactgcttagatga 972838
>emb|BX914203.24| Zebrafish DNA sequence from clone CH211-22E19 in linkage group 11, complete sequence Length = 179563 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 641 gcattcttgtcaacaattaca 661 ||||||||||||||||||||| Sbjct: 178699 gcattcttgtcaacaattaca 178679
>gb|AC073618.48| Homo sapiens 12 BAC RP11-313E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 92909 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 agaaagaggcagcaaagttat 164 ||||||||||||||||||||| Sbjct: 59901 agaaagaggcagcaaagttat 59881
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 553 ttcacccagtaattctggtgc 573 ||||||||||||||||||||| Sbjct: 5426198 ttcacccagtaattctggtgc 5426178
>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5) Length = 2199546 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 601 aggaggggtctcaaagatata 621 ||||||||||||||||||||| Sbjct: 1267810 aggaggggtctcaaagatata 1267830
>gb|AC170189.2| Mus musculus BAC clone RP23-103L12 from chromosome 3, complete sequence Length = 204731 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gattatttagccaaaggaac 269 |||||||||||||||||||| Sbjct: 46135 gattatttagccaaaggaac 46154
>ref|NM_196119.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OJ1208D02.14), mRNA Length = 726 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tccctcatcaccatggtcat 422 |||||||||||||||||||| Sbjct: 329 tccctcatcaccatggtcat 348
>gb|BC045851.1| Danio rerio aldehyde dehydrogenase 1 family, member A2, mRNA (cDNA clone IMAGE:3819707), partial cds Length = 2236 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 atcatcttctgcatcaagag 641 |||||||||||||||||||| Sbjct: 1950 atcatcttctgcatcaagag 1969
>gb|AY634576.1| Triticum aestivum SET domain protein mRNA, complete cds Length = 1440 Score = 40.1 bits (20), Expect = 9.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 428 actggttgccaaaaaacattaggtgagcagctgtggttcatgaa 471 ||||| ||||| || ||||| || ||||| |||||||||||||| Sbjct: 1160 actggctgccagaagacatttggggagcaactgtggttcatgaa 1117
>gb|BT012756.1| Lycopersicon esculentum clone 113700R, mRNA sequence Length = 1165 Score = 40.1 bits (20), Expect = 9.2 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 182 caccacacccataat-gccgccgccaccataa 212 ||||| ||||||||| |||||||||||||||| Sbjct: 529 caccagacccataattgccgccgccaccataa 498
>gb|AC123947.5| Mus musculus BAC clone RP23-103O6 from chromosome 8, complete sequence Length = 187773 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 gatgtgtggatatccctcat 410 |||||||||||||||||||| Sbjct: 46446 gatgtgtggatatccctcat 46427 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 391 gatgtgtggatatccctcat 410 |||||||||||||||||||| Sbjct: 46363 gatgtgtggatatccctcat 46344
>gb|AC161381.2| Mus musculus BAC clone RP23-166L22 from chromosome 8, complete sequence Length = 233354 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 gatgtgtggatatccctcat 410 |||||||||||||||||||| Sbjct: 11264 gatgtgtggatatccctcat 11283 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 391 gatgtgtggatatccctcat 410 |||||||||||||||||||| Sbjct: 11181 gatgtgtggatatccctcat 11200
>gb|AY369140.1| Shigella boydii type 13 O antigen gene cluster, partial sequence Length = 14504 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 506 attattggcaactgcttaga 525 |||||||||||||||||||| Sbjct: 6961 attattggcaactgcttaga 6942
>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence Length = 176667 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 gtgcatagttccatcttaag 589 |||||||||||||||||||| Sbjct: 25557 gtgcatagttccatcttaag 25538
>gb|AC125206.3| Mus musculus BAC clone RP23-240G3 from 10, complete sequence Length = 184252 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 agaaggaattccctgggtgg 35 |||||||||||||||||||| Sbjct: 52470 agaaggaattccctgggtgg 52451
>gb|AC122934.2| Mus musculus BAC clone RP23-19A13 from 3, complete sequence Length = 189627 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 250 gattatttagccaaaggaac 269 |||||||||||||||||||| Sbjct: 153607 gattatttagccaaaggaac 153626
>emb|CR788293.8| Zebrafish DNA sequence from clone DKEYP-3E1 in linkage group 7, complete sequence Length = 99573 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 atcatcttctgcatcaagag 641 |||||||||||||||||||| Sbjct: 55162 atcatcttctgcatcaagag 55181
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 ggttgattatttagccaaag 265 |||||||||||||||||||| Sbjct: 1242833 ggttgattatttagccaaag 1242852
>gb|AC134516.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJA1208D02, complete sequence Length = 131922 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tccctcatcaccatggtcat 422 |||||||||||||||||||| Sbjct: 35512 tccctcatcaccatggtcat 35493
>emb|AJ294474.1|NTA294474 Nicotiana tabacum mRNA for SET-domain-containing protein (set1 gene) Length = 2666 Score = 40.1 bits (20), Expect = 9.2 Identities = 32/36 (88%) Strand = Plus / Minus Query: 441 aaacattaggtgagcagctgtggttcatgaagcgag 476 ||||||||||||| || || |||||||| ||||||| Sbjct: 2092 aaacattaggtgaacaactatggttcataaagcgag 2057
>gb|AF288764.2| Danio rerio retinaldehyde dehydrogenase 2 (raldh2) mRNA, complete cds Length = 2183 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 atcatcttctgcatcaagag 641 |||||||||||||||||||| Sbjct: 1938 atcatcttctgcatcaagag 1957
>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence Length = 120132 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tccctcatcaccatggtcat 422 |||||||||||||||||||| Sbjct: 95644 tccctcatcaccatggtcat 95625
>gb|AF315691.1|AF315691 Danio rerio aldehyde dehydrogenase 1A2 mRNA, complete cds Length = 2233 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 622 atcatcttctgcatcaagag 641 |||||||||||||||||||| Sbjct: 1949 atcatcttctgcatcaagag 1968
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tccctcatcaccatggtcat 422 |||||||||||||||||||| Sbjct: 11227524 tccctcatcaccatggtcat 11227505
>emb|BX932790.1| Gallus gallus finished cDNA, clone ChEST276e2 Length = 1125 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 55 actacaactaacaacaccacagaa 78 |||||||||||||| ||||||||| Sbjct: 1041 actacaactaacaagaccacagaa 1018
>ref|NM_214384.1| Sus scrofa folylpoly-gamma-glutamate carboxypeptidase (FOLH1), mRNA Length = 2532 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gagcagctgtggttcatgaa 471 |||||||||||||||||||| Sbjct: 1321 gagcagctgtggttcatgaa 1340
>gb|AC149602.1| Mus musculus BAC clone RP24-116G21 from chromosome 8, complete sequence Length = 158424 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 gtgcatagttccatcttaag 589 |||||||||||||||||||| Sbjct: 17151 gtgcatagttccatcttaag 17170
>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome Length = 3940880 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 234 gtatcccttaagggttgattattt 257 |||||||||||||||||| ||||| Sbjct: 3583495 gtatcccttaagggttgagtattt 3583472
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 650 tcaacaattacacctgcatattca 673 ||||||||||| |||||||||||| Sbjct: 67817 tcaacaattactcctgcatattca 67794
>gb|AF050502.1|AF050502 Sus scrofa folylpoly-gamma-glutamate carboxypeptidase mRNA, complete cds Length = 2532 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 gagcagctgtggttcatgaa 471 |||||||||||||||||||| Sbjct: 1321 gagcagctgtggttcatgaa 1340
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 403 tccctcatcaccatggtcat 422 |||||||||||||||||||| Sbjct: 11233964 tccctcatcaccatggtcat 11233945
>gb|AC155243.2| Mus musculus BAC clone RP24-555L7 from chromosome 12, complete sequence Length = 124993 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 643 attcttgtcaacaattacac 662 |||||||||||||||||||| Sbjct: 71183 attcttgtcaacaattacac 71202 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,014,061 Number of Sequences: 3902068 Number of extensions: 6014061 Number of successful extensions: 102507 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 101977 Number of HSP's gapped (non-prelim): 530 length of query: 674 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 651 effective length of database: 17,143,297,704 effective search space: 11160286805304 effective search space used: 11160286805304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)