>SAM50_HUMAN (Q9Y512) Sorting and assembly machinery component 50 homolog|
          Length = 469

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
 Frame = -3

Query: 653 LGGISSLLGFRTRGVGPTEPRRLVPGESEDGSPAVPGRDYLGGDLAVSAFADVSFDLPLK 474
           LGG +S+ GF    +GP         +SE         DYLGG+   +    +   LP +
Sbjct: 339 LGGPTSVRGFSMHSIGP---------QSEG--------DYLGGEAYWAGGLHLYTPLPFR 381

Query: 473 --------LFRDAGIHGHAFLTAGNLAKLSEGQYKNFSLDEFRRSFRSTAGVGIILPT-K 321
                   LFR      H FL AGNL  L+ G+     + +     R + G GI+L    
Sbjct: 382 PGQGGFGELFRT-----HFFLNAGNLCNLNYGEGPKAHIRKLAECIRWSYGAGIVLRLGN 436

Query: 320 LFRVEVNYCYILKQSRHDSGKTGIQF 243
           + R+E+NYC  +     D    G+QF
Sbjct: 437 IARLELNYCVPMGVQTGDRICDGVQF 462

>SAM50_YEAST (P53969) Sorting assembly machinery protein 50|
          Length = 484

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 34/136 (25%), Positives = 54/136 (39%)
 Frame = -3

Query: 650 GGISSLLGFRTRGVGPTEPRRLVPGESEDGSPAVPGRDYLGGDLAVSAFADVSFDLPLKL 471
           GG S + GF+T G+GP +                   D +GGD  VS    V   LP K 
Sbjct: 360 GGPSDIRGFQTFGLGPRDLY-----------------DAVGGDAFVSYGLSVFSRLPWKK 402

Query: 470 FRDAGIHGHAFLTAGNLAKLSEGQYKNFSLDEFRRSFRSTAGVGIILPTKLFRVEVNYCY 291
              +    H F   G L         N  + +  +   ++ G+G++L   + R E+N+  
Sbjct: 403 VEKSNFRLHWFFNGGKLVNHDNTSLGN-CIGQLSKEHSTSTGIGLVLRHPMARFELNFTL 461

Query: 290 ILKQSRHDSGKTGIQF 243
            +    +D  + G QF
Sbjct: 462 PITAHENDLIRKGFQF 477

>SAM50_SCHPO (Q10478) SAM50-like protein SpAC17C9.06|
          Length = 475

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
 Frame = -3

Query: 653 LGGISSLLGFRTRGVGPTEPRRLVPGESEDGSPAVPGRDYLGGDLAVSAFADVSFDLPLK 474
           LGG +SL GF    +GP +                 GRD LGG   ++    + F LP K
Sbjct: 351 LGGSTSLRGFSEDRIGPKD-----------------GRDSLGGTAYMAFSMSLLFPLP-K 392

Query: 473 LFRDAGIHGHAFLTAGNLAKLSE----GQYKNFSLDEFRRSFRSTAGVGIILPTKLFRVE 306
           +          F  AG L+ L+     G YK+       +   ST G+G++  T   R E
Sbjct: 393 VDASKPFRLQLFANAGGLSNLTSPNPCGTYKSI----LSKPCIST-GLGLVYATPAARFE 447

Query: 305 VNYCYILKQSRHDSGKTGIQF 243
           +N+   +  +  D G+ G+QF
Sbjct: 448 LNFTLPIATTEKDIGRKGLQF 468

>SAM50_CAEEL (P46576) SAM50-like protein gop-3 (Gro-1 operon protein 3)|
          Length = 434

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
 Frame = -3

Query: 455 IHGHAFLTAGNLAKLSEGQYKNFSLDEFRRSFRSTAGVGIILPTK-LFRVEVNYCYILKQ 279
           +  HAFL +G++A +     KN  + + + + R +AG G+    K +FR+E+NY Y LK 
Sbjct: 360 LFAHAFLASGSVASVHS---KNL-VQQLQDTQRVSAGFGLAFVFKSIFRLELNYTYPLKY 415

Query: 278 SRHDS 264
              DS
Sbjct: 416 VLGDS 420

>XYLF_HAEIN (P45047) D-xylose-binding periplasmic protein precursor (EC|
           3.6.3.17)
          Length = 332

 Score = 34.3 bits (77), Expect = 0.35
 Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 12/136 (8%)
 Frame = +3

Query: 153 MGGGEAVHNAKGM------VRRPVLGSRSLRGRGEAELNSRLSTVVPRLLQNVTVVHLHT 314
           MGG    +NAK        V  P++ S  ++  G+  ++S L+    ++++N    + + 
Sbjct: 152 MGGSPVDNNAKLFRKGQMKVLDPLIASGKIKVVGDQWVDSWLAEKALQIMENALTANKNN 211

Query: 315 EK--LGRQDNAYASSTPE*TTEFIEGEVLVLA----LRQLRKIPSGEKRMTVYSSVSKQL 476
               +   D     +    + + + G+V +      L  +++I +G + MTVY  ++K  
Sbjct: 212 VDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAAIKRIVNGSQTMTVYKPITKLA 271

Query: 477 QRQIKGNVSKGRNSKI 524
            +  +  V  G+N KI
Sbjct: 272 DKAAEIAVELGKNEKI 287

>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
 Frame = +1

Query: 478  RGRSKETSAKAETARSPPK*SLPGTAGEP-------SSDSPGTSLRGSVGPTPL 618
            RG   E   + E  R  P   LPGT G P       S D PG  L G  GP  L
Sbjct: 2060 RGERGEKGERGEQGRDGPP-GLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGL 2112

>BIR1B_MOUSE (Q9QUK4) Baculoviral IAP repeat-containing protein 1b (Neuronal|
           apoptosis inhibitory protein 2)
          Length = 1447

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +1

Query: 22  LVFELHRHLR-DTPLVLKRREQNPYRLLLSTKRKYPSEQRKKGTKWEEAKRSTTQKGWCD 198
           LV EL   LR D   VLKR+++  ++  +  K+ + S+ R +  + +  +     + W  
Sbjct: 19  LVSELSTLLRVDALSVLKRQQEEDHKTRMKMKKGFNSQMRSEAKRLKTFETYDKFRSWTP 78

Query: 199 VQCLVAGLYEGEEKL 243
            +   AG Y    KL
Sbjct: 79  QEMAAAGFYHTGVKL 93

>CPSF6_PONPY (Q5NVH8) Cleavage and polyadenylation specificity factor 6|
          Length = 552

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 520 RSPPK*SL--PGTAGEPSSDSPGTSLRGSVGPTPLVLKPNRDDIPP 651
           ++PP+  L  PG  G P    PG  L     P PL   PNR D PP
Sbjct: 234 QTPPRPPLGPPGPPGPPGPPPPGQVL-----PPPLAGPPNRGDRPP 274

>IRX3_MOUSE (P81067) Iroquois-class homeodomain protein IRX-3 (Iroquois|
           homeobox protein 3) (Homeodomain protein IRXB1)
          Length = 507

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 448 PCIPASLNSFRGRSKETSAKAETARSP--PK*SLPGTAGEPSSDSPGTSLRGSVGPTPLV 621
           PC PA   S   +  +  + AETA SP  P+ S PG  G P    PG     +V P  L 
Sbjct: 336 PCAPAPAPSSALQKPKIWSLAETATSPDNPRRSPPGAGGSP----PG----AAVAPPTLQ 387

Query: 622 LKP 630
           L P
Sbjct: 388 LSP 390

>CPSF6_MOUSE (Q6NVF9) Cleavage and polyadenylation specificity factor 6|
          Length = 551

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 520 RSPPK*SL--PGTAGEPSSDSPGTSLRGSVGPTPLVLKPNRDDIPP 651
           ++PP+  L  PG  G P    PG  L     P PL   PNR D PP
Sbjct: 234 QTPPRPPLGPPGPPGPPGPPPPGQVL-----PPPLAGPPNRGDRPP 274

>CPSF6_HUMAN (Q16630) Cleavage and polyadenylation specificity factor 6|
           (Cleavage and polyadenylation specificity factor 68 kDa
           subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor
           Im 68-kDa subunit) (Protein HPBRII-4/7)
          Length = 551

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 520 RSPPK*SL--PGTAGEPSSDSPGTSLRGSVGPTPLVLKPNRDDIPP 651
           ++PP+  L  PG  G P    PG  L     P PL   PNR D PP
Sbjct: 234 QTPPRPPLGPPGPPGPPGPPPPGQVL-----PPPLAGPPNRGDRPP 274

>PELX_ERWCH (P22751) Pectate disaccharide-lyase precursor (EC 4.2.2.9)|
           (Exopolygalacturonate lyase) (ExoPL)
          Length = 749

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -3

Query: 341 GIILPTKLFRVEVNYCYILKQSRHDSGKTGIQFSFSSPS*RPATKHWTSHHPFCVVDRFA 162
           GI +  K FR+E ++  I +   H    TGIQ S S    RP    W SH+     +  +
Sbjct: 472 GIEITEKSFRIEGSHNQIERLLAHHCDNTGIQVSSSDNVGRPL---WASHNLILNSESHS 528

Query: 161 SSH 153
           + H
Sbjct: 529 NQH 531

>VG18_ICHV1 (Q00120) Hypothetical gene 18 protein|
          Length = 318

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 91  KGSVPFSLTLMVCHGGACVTQIPM 20
           + S+P   TL+VCHG   VT +P+
Sbjct: 257 RASIPRRFTLIVCHGTVAVTAVPV 280

>SUCD_RICPR (O08371) Succinyl-CoA synthetase alpha chain (EC 6.2.1.5)|
           (SCS-alpha)
          Length = 292

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 638 SLLGFRTRGVGPTEPRRLVPGESEDGSPAVPGRDYLGGDLAV 513
           +L+G +TR +GP  P  + PGE + G   +PG  +  GD+ +
Sbjct: 111 ALIGSKTRLIGPNCPGVITPGECKIG--IMPGHIHKIGDIGI 150

>NCKX2_HUMAN (Q9UI40) Sodium/potassium/calcium exchanger 2 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 2) (Retinal cone
           Na-Ca+K exchanger) (Solute carrier family 24 member 2)
          Length = 661

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 580 PASRKMVPLLFQGGITWVA 524
           P+SRK  P+ F G ITW+A
Sbjct: 493 PSSRKFFPITFFGSITWIA 511

>NCKX2_RAT (O54701) Sodium/potassium/calcium exchanger 2 precursor|
           (Na(+)/K(+)/Ca(2+)-exchange protein 2) (Retinal cone
           Na-Ca+K exchanger)
          Length = 670

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 580 PASRKMVPLLFQGGITWVA 524
           PAS+K  P+ F G ITW+A
Sbjct: 502 PASKKFFPITFFGSITWIA 520


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,926,775
Number of Sequences: 219361
Number of extensions: 2400860
Number of successful extensions: 8533
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8517
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)