Clone Information

BLAST Search Result

Clone Name	rbags13p24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK069780.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	262	1e-66
2	gb\|AC135423.2\| Oryza sativa (japonica cultivar-group) chromosome...	230	5e-57
3	gb\|AC121364.2\| Oryza sativa (japonica cultivar-group) chromosome...	230	5e-57
4	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	230	5e-57
5	gb\|AY106377.1\| Zea mays PCO111367 mRNA sequence	94	7e-16
6	gb\|AY610108.1\| Sus scrofa clone Clu_71568.scr.msk.p1.Contig1, mR...	46	0.15
7	emb\|AL442203.12\| Human DNA sequence from clone RP11-12I24 on chr...	44	0.58
8	emb\|AL158069.16\| Human DNA sequence from clone RP13-57D9 on chro...	44	0.58
9	gb\|AC142396.25\| Medicago truncatula clone mth2-6g9, complete seq...	44	0.58
10	gb\|AC008569.7\| Homo sapiens chromosome 19 clone CTC-548K16, comp...	44	0.58
11	gb\|AC007126.6\|AC007126 Homo sapiens chromosome 4 clone C0496D08,...	44	0.58
12	gb\|BC081248.1\| Xenopus laevis MGC86228 protein, mRNA (cDNA clone...	42	2.3
13	emb\|AL590097.16\| Human DNA sequence from clone RP11-117C7 on chr...	42	2.3
14	emb\|AL445470.5\| Human DNA sequence from clone RP11-421L10 on chr...	42	2.3
15	emb\|AL355812.23\| Human DNA sequence from clone RP11-810O3 on chr...	42	2.3
16	gb\|AC010068.8\| Drosophila melanogaster 3L BAC RP98-15K24 (Roswel...	42	2.3
17	gb\|AE003596.5\| Drosophila melanogaster chromosome 3L, section 77...	42	2.3
18	gb\|AC161060.6\| Mus musculus BAC clone RP23-69N10 from chromosome...	40	9.1
19	gb\|DQ143963.2\| Streptomyces rimosus oxytetracycline gene cluster...	40	9.1
20	gb\|AC127356.4\| Mus musculus BAC clone RP23-100B5 from chromosome...	40	9.1
21	gb\|AC128662.4\| Mus musculus BAC clone RP24-440E3 from chromosome...	40	9.1
22	gb\|AC015751.10\| Homo sapiens chromosome 17, clone RP11-1J8, comp...	40	9.1
23	emb\|AL591378.2\| Human DNA sequence from clone RP11-64P15 on chro...	40	9.1
24	emb\|AL445923.10\| Human DNA sequence from clone RP11-117N4 on chr...	40	9.1
25	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	40	9.1
26	emb\|AL353611.19\| Human DNA sequence from clone RP11-447M12 on ch...	40	9.1
27	emb\|AL161612.13\| Human DNA sequence from clone RP11-196P2 on chr...	40	9.1
28	emb\|AL139105.17\| Human DNA sequence from clone RP3-475J3 on chro...	40	9.1
29	gb\|AC018555.5\| Homo sapiens chromosome 16 clone RP11-486F10, com...	40	9.1
30	emb\|AL645847.15\| Mouse DNA sequence from clone RP23-428I5 on chr...	40	9.1
31	gb\|AC087240.17\| Homo sapiens 12p BAC RP11-752F20 (Roswell Park C...	40	9.1
32	gb\|AC095061.3\| Homo sapiens BAC clone RP11-439C3 from 4, complet...	40	9.1
33	dbj\|AK154039.1\| Mus musculus 2 days neonate thymus thymic cells ...	40	9.1
34	gb\|AC016465.8\| Homo sapiens, clone RP11-11K9, complete sequence	40	9.1
35	dbj\|AK036388.1\| Mus musculus adult male bone cDNA, RIKEN full-le...	40	9.1
36	dbj\|AK029583.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	9.1
37	gb\|AC058784.17\|AC058784 Homo sapiens chromosome 13 clone RP11-28...	40	9.1
38	dbj\|AB188198.2\| Glycine max GmFAD3-2b mRNA for microsomal omega-...	40	9.1
39	gb\|AC009081.8\| Homo sapiens chromosome 16 clone RP11-354I13, com...	40	9.1
40	gb\|AC129181.4\| Mus musculus chromosome UL clone RP23-325P17, com...	40	9.1
41	ref\|XM_239761.3\| PREDICTED: Rattus norvegicus similar to PLU1 (L...	40	9.1
42	gb\|AC008812.7\|AC008812 Homo sapiens chromosome 19 clone CTD-2102...	40	9.1
43	gb\|AF087137.1\|AF087137 Streptomyces rimosus cyclase/aromatase (o...	40	9.1
44	gb\|AC102895.7\| Mus musculus chromosome 15, clone RP24-356D22, co...	40	9.1
45	emb\|CT009604.11\| Mouse DNA sequence from clone RP23-4J22 on chro...	40	9.1
46	dbj\|AP006703.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	9.1
47	emb\|AL627074.11\| Mouse DNA sequence from clone RP23-465A17 on ch...	40	9.1
48	emb\|AL645968.6\| Mouse DNA sequence from clone DN-25M4 on chromos...	40	9.1
49	emb\|AL731839.13\| Mouse DNA sequence from clone RP23-76O22 on chr...	40	9.1
50	gb\|AC087309.10\| Homo sapiens 12 BAC RP11-545J16 (Roswell Park Ca...	40	9.1

>dbj|AK069780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028F19, full
            insert sequence
          Length = 3290

 Score =  262 bits (132), Expect = 1e-66
 Identities = 324/388 (83%)
 Strand = Plus / Minus

                                                                        
Query: 280  tgcttcagaatgtaacagtagttcacctccacacggaaaagcttggtcggcaagataatg 339
            ||||||| |||||||||||||||||||||||| ||||||||||| || ||||| ||||||
Sbjct: 1551 tgcttcaaaatgtaacagtagttcacctccactcggaaaagcttagtaggcaaaataatg 1492

                                                                        
Query: 340  cctacgccagcagtactcctgaatgaacgacggaattcatcgagggagaagttcttgtac 399
            || || || ||||  ||| | |||| ||| |  ||||||   || ||||| ||||| |||
Sbjct: 1491 ccaacacctgcagagctcttaaatgtacgcccaaattcagaaagtgagaacttcttatac 1432

                                                                        
Query: 400  tggccctccgacaacttcgcaagattcccagcggtgagaaacgcatgaccgtgtattcca 459
            |  ||||||||||  |||||||| |||||||| || ||||| |||||||| |||||||||
Sbjct: 1431 tcaccctccgacagtttcgcaaggttcccagcagttagaaatgcatgaccatgtattcca 1372

                                                                        
Query: 460  gcgtctctaaacagcttcagaggcagatcaaaggaaacgtcagcaaaggcagaaacagca 519
            || |||||||| | ||||||||||| |||||| |||| ||||||||||||||| ||||||
Sbjct: 1371 gcatctctaaatatcttcagaggcaaatcaaacgaaaggtcagcaaaggcagagacagca 1312

                                                                        
Query: 520  agatcgccacccaagtaatccctccctggaacagcaggggaaccatcttccgactcgccg 579
            ||||| |||||||||||||||| ||||||    ||||  || ||||| || || || |  
Sbjct: 1311 agatcaccacccaagtaatcccgccctggtgaggcagcagatccatcctcagattcacta 1252

                                                                        
Query: 580  gggacaagcctccgcggttctgtcgggccaactcctcttgttctgaaacccaatagggat 639
            |||||||||||||| |||||||| || ||||  |||||||||||||||||||| | ||||
Sbjct: 1251 gggacaagcctccgtggttctgttggaccaatccctcttgttctgaaacccaacaaggat 1192

                                        
Query: 640  gatattccacccaggctgcaaactggag 667
            || | ||||| || ||||||||||||||
Sbjct: 1191 gacagtccactcaagctgcaaactggag 1164

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>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02,
             complete sequence
          Length = 147407

 Score =  230 bits (116), Expect = 5e-57
 Identities = 302/364 (82%)
 Strand = Plus / Plus

                                                                         
Query: 304   acctccacacggaaaagcttggtcggcaagataatgcctacgccagcagtactcctgaat 363
             |||||||| ||||||||||| || ||||| |||||||| || || ||||  ||||| |||
Sbjct: 23385 acctccactcggaaaagcttagtaggcaaaataatgccaacacctgcagagctcctaaat 23444

                                                                         
Query: 364   gaacgacggaattcatcgagggagaagttcttgtactggccctccgacaacttcgcaaga 423
             | ||| |  ||||||   || ||||| ||||| ||||  ||||||||||  |||||||| 
Sbjct: 23445 gtacgcccaaattcagaaagtgagaacttcttatactcaccctccgacagtttcgcaagg 23504

                                                                         
Query: 424   ttcccagcggtgagaaacgcatgaccgtgtattccagcgtctctaaacagcttcagaggc 483
             |||||||| || ||||| |||||||| ||||||||||| |||||||| | ||||||||||
Sbjct: 23505 ttcccagcagttagaaatgcatgaccatgtattccagcatctctaaatatcttcagaggc 23564

                                                                         
Query: 484   agatcaaaggaaacgtcagcaaaggcagaaacagcaagatcgccacccaagtaatccctc 543
             | |||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct: 23565 aaatcaaacgaaaggtcagcaaaggcagagacagcaagatcaccacccaagtaatcccgc 23624

                                                                         
Query: 544   cctggaacagcaggggaaccatcttccgactcgccggggacaagcctccgcggttctgtc 603
             |||||    ||||  || ||||| || || || |  |||||||||||||| |||||||| 
Sbjct: 23625 cctggtgaggcagcagatccatcctcagattcactagggacaagcctccgtggttctgtt 23684

                                                                         
Query: 604   gggccaactcctcttgttctgaaacccaatagggatgatattccacccaggctgcaaact 663
             || ||||  |||||||||||||||||||| | |||||| | ||||| || ||||||||||
Sbjct: 23685 ggaccaatccctcttgttctgaaacccaacaaggatgacagtccactcaagctgcaaact 23744

                 
Query: 664   ggag 667
             ||||
Sbjct: 23745 ggag 23748



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 280   tgcttcagaatgtaacagtagttcacct 307
             ||||||| ||||||||||||||||||||
Sbjct: 23270 tgcttcaaaatgtaacagtagttcacct 23297

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>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0052E20, complete sequence
          Length = 162434

 Score =  230 bits (116), Expect = 5e-57
 Identities = 302/364 (82%)
 Strand = Plus / Plus

                                                                         
Query: 304   acctccacacggaaaagcttggtcggcaagataatgcctacgccagcagtactcctgaat 363
             |||||||| ||||||||||| || ||||| |||||||| || || ||||  ||||| |||
Sbjct: 64918 acctccactcggaaaagcttagtaggcaaaataatgccaacacctgcagagctcctaaat 64977

                                                                         
Query: 364   gaacgacggaattcatcgagggagaagttcttgtactggccctccgacaacttcgcaaga 423
             | ||| |  ||||||   || ||||| ||||| ||||  ||||||||||  |||||||| 
Sbjct: 64978 gtacgcccaaattcagaaagtgagaacttcttatactcaccctccgacagtttcgcaagg 65037

                                                                         
Query: 424   ttcccagcggtgagaaacgcatgaccgtgtattccagcgtctctaaacagcttcagaggc 483
             |||||||| || ||||| |||||||| ||||||||||| |||||||| | ||||||||||
Sbjct: 65038 ttcccagcagttagaaatgcatgaccatgtattccagcatctctaaatatcttcagaggc 65097

                                                                         
Query: 484   agatcaaaggaaacgtcagcaaaggcagaaacagcaagatcgccacccaagtaatccctc 543
             | |||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct: 65098 aaatcaaacgaaaggtcagcaaaggcagagacagcaagatcaccacccaagtaatcccgc 65157

                                                                         
Query: 544   cctggaacagcaggggaaccatcttccgactcgccggggacaagcctccgcggttctgtc 603
             |||||    ||||  || ||||| || || || |  |||||||||||||| |||||||| 
Sbjct: 65158 cctggtgaggcagcagatccatcctcagattcactagggacaagcctccgtggttctgtt 65217

                                                                         
Query: 604   gggccaactcctcttgttctgaaacccaatagggatgatattccacccaggctgcaaact 663
             || ||||  |||||||||||||||||||| | |||||| | ||||| || ||||||||||
Sbjct: 65218 ggaccaatccctcttgttctgaaacccaacaaggatgacagtccactcaagctgcaaact 65277

                 
Query: 664   ggag 667
             ||||
Sbjct: 65278 ggag 65281



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 280   tgcttcagaatgtaacagtagttcacct 307
             ||||||| ||||||||||||||||||||
Sbjct: 64803 tgcttcaaaatgtaacagtagttcacct 64830

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  230 bits (116), Expect = 5e-57
 Identities = 302/364 (82%)
 Strand = Plus / Plus

                                                                            
Query: 304      acctccacacggaaaagcttggtcggcaagataatgcctacgccagcagtactcctgaat 363
                |||||||| ||||||||||| || ||||| |||||||| || || ||||  ||||| |||
Sbjct: 22960905 acctccactcggaaaagcttagtaggcaaaataatgccaacacctgcagagctcctaaat 22960964

                                                                            
Query: 364      gaacgacggaattcatcgagggagaagttcttgtactggccctccgacaacttcgcaaga 423
                | ||| |  ||||||   || ||||| ||||| ||||  ||||||||||  |||||||| 
Sbjct: 22960965 gtacgcccaaattcagaaagtgagaacttcttatactcaccctccgacagtttcgcaagg 22961024

                                                                            
Query: 424      ttcccagcggtgagaaacgcatgaccgtgtattccagcgtctctaaacagcttcagaggc 483
                |||||||| || ||||| |||||||| ||||||||||| |||||||| | ||||||||||
Sbjct: 22961025 ttcccagcagttagaaatgcatgaccatgtattccagcatctctaaatatcttcagaggc 22961084

                                                                            
Query: 484      agatcaaaggaaacgtcagcaaaggcagaaacagcaagatcgccacccaagtaatccctc 543
                | |||||| |||| ||||||||||||||| ||||||||||| |||||||||||||||| |
Sbjct: 22961085 aaatcaaacgaaaggtcagcaaaggcagagacagcaagatcaccacccaagtaatcccgc 22961144

                                                                            
Query: 544      cctggaacagcaggggaaccatcttccgactcgccggggacaagcctccgcggttctgtc 603
                |||||    ||||  || ||||| || || || |  |||||||||||||| |||||||| 
Sbjct: 22961145 cctggtgaggcagcagatccatcctcagattcactagggacaagcctccgtggttctgtt 22961204

                                                                            
Query: 604      gggccaactcctcttgttctgaaacccaatagggatgatattccacccaggctgcaaact 663
                || ||||  |||||||||||||||||||| | |||||| | ||||| || ||||||||||
Sbjct: 22961205 ggaccaatccctcttgttctgaaacccaacaaggatgacagtccactcaagctgcaaact 22961264

                    
Query: 664      ggag 667
                ||||
Sbjct: 22961265 ggag 22961268



 Score = 48.1 bits (24), Expect = 0.037
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 280      tgcttcagaatgtaacagtagttcacct 307
                ||||||| ||||||||||||||||||||
Sbjct: 22960790 tgcttcaaaatgtaacagtagttcacct 22960817

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>gb|AY106377.1| Zea mays PCO111367 mRNA sequence
          Length = 1086

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 128/155 (82%)
 Strand = Plus / Minus

                                                                       
Query: 388 aagttcttgtactggccctccgacaacttcgcaagattcccagcggtgagaaacgcatga 447
           |||||||||||||  ||||||||||  |||||||| || ||||| || || || || || 
Sbjct: 966 aagttcttgtactcaccctccgacagtttcgcaaggtttccagcagtaaggaatgcgtgg 907

                                                                       
Query: 448 ccgtgtattccagcgtctctaaacagcttcagaggcagatcaaaggaaacgtcagcaaag 507
           || || |||||||||||||| || | ||| || ||||||||||| |||| |||||| |||
Sbjct: 906 ccatggattccagcgtctctgaatatcttgaggggcagatcaaaagaaaggtcagcgaag 847

                                              
Query: 508 gcagaaacagcaagatcgccacccaagtaatccct 542
           ||||| || || ||||| || ||||||||||||||
Sbjct: 846 gcagacacggccagatcacctcccaagtaatccct 812



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 298  tagttcacctccacacggaaaagcttggtcggcaagataatgcctacgccagcag 352
            ||||||||||| || |||||||| ||||| ||||| ||||| || ||||||||||
Sbjct: 1056 tagttcacctctacccggaaaagtttggtaggcaaaataatcccaacgccagcag 1002



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 581 ggacaagcctccgcggttctgtcgggccaactcctcttgttctgaaaccca 631
           ||||| |||||||||  ||||| ||||||||||| |||  |||||||||||
Sbjct: 776 ggacatgcctccgcgcctctgttgggccaactccccttaatctgaaaccca 726

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>gb|AY610108.1| Sus scrofa clone Clu_71568.scr.msk.p1.Contig1, mRNA sequence
          Length = 984

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 455 ttccagcgtctctaaacagcttc 477
           |||||||||||||||||||||||
Sbjct: 279 ttccagcgtctctaaacagcttc 257

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>emb|AL442203.12| Human DNA sequence from clone RP11-12I24 on chromosome 13 Contains the
             5' end of a novel gene (contains KIAA0564 and FLJ21779)
             possible ortholog of RIKEN cDNA 1300010F03 gene, a
             lysyl-tRNA synthetase (KARS) pseudogene, a ribosomal
             protein S28 (RPS28) pseudogene and 2 CpG islands, complete
             sequence
          Length = 163511

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 131   aacagagaaagaaaggaacaaa 152
             ||||||||||||||||||||||
Sbjct: 80530 aacagagaaagaaaggaacaaa 80551

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>emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chromosome Xq11.2-13.2
              Contains the gene for TED protein (TED),  the 5' end of the
              ED1 gene for ectodermal dysplasia 1, anhidrotic, two novel
              genes and three CpG islands, complete sequence
          Length = 186538

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 131    aacagagaaagaaaggaacaaa 152
              ||||||||||||||||||||||
Sbjct: 171884 aacagagaaagaaaggaacaaa 171863

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>gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete sequence
          Length = 106058

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 133   cagagaaagaaaggaacaaaat 154
             ||||||||||||||||||||||
Sbjct: 29557 cagagaaagaaaggaacaaaat 29536

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>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence
          Length = 227245

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 134    agagaaagaaaggaacaaaatg 155
              ||||||||||||||||||||||
Sbjct: 159398 agagaaagaaaggaacaaaatg 159377

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>gb|AC007126.6|AC007126 Homo sapiens chromosome 4 clone C0496D08, complete sequence
          Length = 218698

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 131  aacagagaaagaaaggaacaaa 152
            ||||||||||||||||||||||
Sbjct: 6156 aacagagaaagaaaggaacaaa 6135

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>gb|BC081248.1| Xenopus laevis MGC86228 protein, mRNA (cDNA clone MGC:86228
           IMAGE:6958361), complete cds
          Length = 2228

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 372 gaattcatcgagggagaagtt 392
           |||||||||||||||||||||
Sbjct: 351 gaattcatcgagggagaagtt 371

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>emb|AL590097.16| Human DNA sequence from clone RP11-117C7 on chromosome X Contains part
             of the HTR2C gene for 5-hydroxytryptamine (serotonin)
             receptor 2C, complete sequence
          Length = 104773

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 134   agagaaagaaaggaacaaaat 154
             |||||||||||||||||||||
Sbjct: 35043 agagaaagaaaggaacaaaat 35063

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>emb|AL445470.5| Human DNA sequence from clone RP11-421L10 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 86332

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 132   acagagaaagaaaggaacaaa 152
             |||||||||||||||||||||
Sbjct: 39728 acagagaaagaaaggaacaaa 39748

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>emb|AL355812.23| Human DNA sequence from clone RP11-810O3 on chromosome Xq22.3-24
             Contains the 3' end of the HTR2C gene for
             5-hydroxytryptamine (serotonin) receptor 2C, complete
             sequence
          Length = 147288

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 134   agagaaagaaaggaacaaaat 154
             |||||||||||||||||||||
Sbjct: 15473 agagaaagaaaggaacaaaat 15453

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>gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 178607

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 134    agagaaagaaaggaacaaaatggga 158
              ||||||||||||||||||| |||||
Sbjct: 136787 agagaaagaaaggaacaaattggga 136763

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>gb|AE003596.5| Drosophila melanogaster chromosome 3L, section 77 of 83 of the complete
             sequence
          Length = 249021

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 134   agagaaagaaaggaacaaaatggga 158
             ||||||||||||||||||| |||||
Sbjct: 47835 agagaaagaaaggaacaaattggga 47811

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>gb|AC161060.6| Mus musculus BAC clone RP23-69N10 from chromosome 6, complete sequence
          Length = 222363

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 476    tcagaggcagatcaaaggaa 495
              ||||||||||||||||||||
Sbjct: 181464 tcagaggcagatcaaaggaa 181445

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>gb|DQ143963.2| Streptomyces rimosus oxytetracycline gene cluster, complete sequence
          Length = 25222

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 191   ggtgcgacgtccagtgcttg 210
             ||||||||||||||||||||
Sbjct: 11653 ggtgcgacgtccagtgcttg 11634

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>gb|AC127356.4| Mus musculus BAC clone RP23-100B5 from chromosome 8, complete sequence
          Length = 199258

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 637    gatgatattccacccaggct 656
              ||||||||||||||||||||
Sbjct: 112495 gatgatattccacccaggct 112476

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>gb|AC128662.4| Mus musculus BAC clone RP24-440E3 from chromosome 6, complete sequence
          Length = 134729

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   tcagaggcagatcaaaggaa 495
             ||||||||||||||||||||
Sbjct: 85212 tcagaggcagatcaaaggaa 85193

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>gb|AC015751.10| Homo sapiens chromosome 17, clone RP11-1J8, complete sequence
          Length = 104948

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    ttaaagagaagggaacagaa 86
             ||||||||||||||||||||
Sbjct: 88881 ttaaagagaagggaacagaa 88862

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>emb|AL591378.2| Human DNA sequence from clone RP11-64P15 on chromosome X Contains the 5'
              end of a novel gene and a CpG island, complete sequence
          Length = 166016

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    agagaaagaaaggaacaaaa 153
              ||||||||||||||||||||
Sbjct: 163473 agagaaagaaaggaacaaaa 163454

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>emb|AL445923.10| Human DNA sequence from clone RP11-117N4 on chromosome 13 Contains a
              ribosomal protein S10 (RPS10) pseudogene, complete sequence
          Length = 154726

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    agagaaagaaaggaacaaaa 153
              ||||||||||||||||||||
Sbjct: 120377 agagaaagaaaggaacaaaa 120396

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 488     caaaggaaacgtcagcaaaggcag 511
               |||||||||||||||||| |||||
Sbjct: 2450597 caaaggaaacgtcagcaatggcag 2450620

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>emb|AL353611.19| Human DNA sequence from clone RP11-447M12 on chromosome 9 Contains
            the FCN1 gene for ficolin (collagen/fibrinogen domain
            containing) 1 and a novel gene, complete sequence
          Length = 104972

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 471  cagcttcagaggcagatcaa 490
            ||||||||||||||||||||
Sbjct: 7698 cagcttcagaggcagatcaa 7717

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>emb|AL161612.13| Human DNA sequence from clone RP11-196P2 on chromosome 13 Contains a
            novel gene, complete sequence
          Length = 160145

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 136  agaaagaaaggaacaaaatg 155
            ||||||||||||||||||||
Sbjct: 6351 agaaagaaaggaacaaaatg 6370

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>emb|AL139105.17| Human DNA sequence from clone RP3-475J3 on chromosome 6, complete
             sequence
          Length = 64851

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   agagaaagaaaggaacaaaa 153
             ||||||||||||||||||||
Sbjct: 21585 agagaaagaaaggaacaaaa 21566

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>gb|AC018555.5| Homo sapiens chromosome 16 clone RP11-486F10, complete sequence
          Length = 187844

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   agagaaagaaaggaacaaaa 153
             ||||||||||||||||||||
Sbjct: 36621 agagaaagaaaggaacaaaa 36640

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>emb|AL645847.15| Mouse DNA sequence from clone RP23-428I5 on chromosome 11 Contains the 3'
              end of the Trim16 gene for tripartite motif protein 16, the
              gene for a novel WD domain, G-beta repeat domain containing
              protein, the gene for the ortholog of human family with
              sequence similarity 18 member B FAM18B, a novel gene and
              the 5' end of a novel gene, complete sequence
          Length = 124933

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     ttaaagagaagggaacagaa 86
              ||||||||||||||||||||
Sbjct: 113000 ttaaagagaagggaacagaa 112981

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>gb|AC087240.17| Homo sapiens 12p BAC RP11-752F20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 198068

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    agagaaagaaaggaacaaaa 153
              ||||||||||||||||||||
Sbjct: 153666 agagaaagaaaggaacaaaa 153647

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>gb|AC095061.3| Homo sapiens BAC clone RP11-439C3 from 4, complete sequence
          Length = 133316

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 139   aagaaaggaacaaaatggga 158
             ||||||||||||||||||||
Sbjct: 39714 aagaaaggaacaaaatggga 39733

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>dbj|AK154039.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430027A06
            product:unclassifiable, full insert sequence
          Length = 2266

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 637  gatgatattccacccaggct 656
            ||||||||||||||||||||
Sbjct: 2062 gatgatattccacccaggct 2081

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>gb|AC016465.8| Homo sapiens, clone RP11-11K9, complete sequence
          Length = 161082

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   agaggcagatcaaaggaaac 497
             ||||||||||||||||||||
Sbjct: 73532 agaggcagatcaaaggaaac 73513

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>dbj|AK036388.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830004C11 product:unclassifiable, full
            insert sequence
          Length = 2085

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 637  gatgatattccacccaggct 656
            ||||||||||||||||||||
Sbjct: 1881 gatgatattccacccaggct 1900

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>dbj|AK029583.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930404L01 product:Rab6-interacting
            protein 2, full insert sequence
          Length = 4218

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 476  tcagaggcagatcaaaggaa 495
            ||||||||||||||||||||
Sbjct: 2590 tcagaggcagatcaaaggaa 2609

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>gb|AC058784.17|AC058784 Homo sapiens chromosome 13 clone RP11-288O16, complete sequence
          Length = 163781

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   agaaagaaaggaacaaaatg 155
             ||||||||||||||||||||
Sbjct: 50345 agaaagaaaggaacaaaatg 50326

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>dbj|AB188198.2| Glycine max GmFAD3-2b mRNA for microsomal omega-3 fatty acid
           desaturase, complete cds
          Length = 1320

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 131 aacagagaaagaaaggaaca 150
           ||||||||||||||||||||
Sbjct: 1   aacagagaaagaaaggaaca 20

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>gb|AC009081.8| Homo sapiens chromosome 16 clone RP11-354I13, complete sequence
          Length = 166179

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    agagaaagaaaggaacaaaa 153
              ||||||||||||||||||||
Sbjct: 142080 agagaaagaaaggaacaaaa 142099

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>gb|AC129181.4| Mus musculus chromosome UL clone RP23-325P17, complete sequence
          Length = 204520

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 626   aacccaatagggatgatatt 645
             ||||||||||||||||||||
Sbjct: 89901 aacccaatagggatgatatt 89920

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>ref|XM_239761.3| PREDICTED: Rattus norvegicus similar to PLU1 (LOC304809), mRNA
          Length = 6286

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 134  agagaaagaaaggaacaaaa 153
            ||||||||||||||||||||
Sbjct: 5291 agagaaagaaaggaacaaaa 5272

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>gb|AC008812.7|AC008812 Homo sapiens chromosome 19 clone CTD-2102F19, complete sequence
          Length = 143619

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   agagaaagaaaggaacaaaa 153
             ||||||||||||||||||||
Sbjct: 59370 agagaaagaaaggaacaaaa 59351

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>gb|AF087137.1|AF087137 Streptomyces rimosus cyclase/aromatase (otcD1) gene, complete cds
          Length = 1146

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 191 ggtgcgacgtccagtgcttg 210
           ||||||||||||||||||||
Sbjct: 213 ggtgcgacgtccagtgcttg 194

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>gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, complete sequence
          Length = 165778

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 502    gcaaaggcagaaacagcaag 521
              ||||||||||||||||||||
Sbjct: 138286 gcaaaggcagaaacagcaag 138267

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>emb|CT009604.11| Mouse DNA sequence from clone RP23-4J22 on chromosome 13, complete
             sequence
          Length = 209356

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 296   agtagttcacctccacacgg 315
             ||||||||||||||||||||
Sbjct: 30270 agtagttcacctccacacgg 30251

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>dbj|AP006703.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01O03, TM0588b,
            complete sequence
          Length = 45450

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 138  aaagaaaggaacaaaatggg 157
            ||||||||||||||||||||
Sbjct: 5488 aaagaaaggaacaaaatggg 5469

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>emb|AL627074.11| Mouse DNA sequence from clone RP23-465A17 on chromosome 3, complete
              sequence
          Length = 177133

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    gagaaagaaaggaacaaaat 154
              ||||||||||||||||||||
Sbjct: 116623 gagaaagaaaggaacaaaat 116604

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>emb|AL645968.6| Mouse DNA sequence from clone DN-25M4 on chromosome 3, complete
             sequence
          Length = 161821

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   gagaaagaaaggaacaaaat 154
             ||||||||||||||||||||
Sbjct: 23091 gagaaagaaaggaacaaaat 23110

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>emb|AL731839.13| Mouse DNA sequence from clone RP23-76O22 on chromosome X, complete
             sequence
          Length = 228355

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 136   agaaagaaaggaacaaaatgggag 159
             ||||||||||||| ||||||||||
Sbjct: 81984 agaaagaaaggaagaaaatgggag 82007

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>gb|AC087309.10| Homo sapiens 12 BAC RP11-545J16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 146677

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    gagaaagaaaggaacaaaat 154
              ||||||||||||||||||||
Sbjct: 126111 gagaaagaaaggaacaaaat 126092


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,515,084
Number of Sequences: 3902068
Number of extensions: 5515084
Number of successful extensions: 100206
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100063
Number of HSP's gapped (non-prelim): 140
length of query: 667
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 644
effective length of database: 17,143,297,704
effective search space: 11040283721376
effective search space used: 11040283721376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result