ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags13p23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY323206.1| Hordeum vulgare SUSIBA2 (susiba2) mRNA, complete cds Length = 2354 Score = 1154 bits (582), Expect = 0.0 Identities = 637/653 (97%), Gaps = 12/653 (1%) Strand = Plus / Minus Query: 1 atatttctatna-tattcc-gtacagaagattagacagttcacgaaaccaaattctcata 58 |||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 2311 atatttctatcaatattccagtacagaagattagacagttcacgaaaccaaattctcata 2252 Query: 59 atctaattaattaatcatattaggttcgctgtacaacgaatgtagggctgcaatgctaca 118 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 2251 atctaattaattaatcatattaggttcgctgtacaacgaatgtagggctgcgatgctaca 2192 Query: 119 tacagcaagggccttttccgcacttaaaaagacacatgcgtatttgctgcagt-ccccca 177 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 2191 tacagcaagggccttttccgcacttaaaaagacacatgcgtatttgctgcagtgccccca 2132 Query: 178 ggtatagcttatactagcatacttgcctccggctgaactgacttgtaaccgatacacaat 237 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2131 cgtatagcttatactagcatacttgcctccggctgaactgacttgtaaccgatacacaat 2072 Query: 238 tgaga---------atcttgctgaagagattgtcattacaaagcattgttggtaatatat 288 ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2071 tgagacaattgagaatcttgctgaagagattgtcattacaaagcattgttggtaatatat 2012 Query: 289 gattcatggagctatgagcatttgcagacactctcattccctctcatggacccatgacca 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2011 gattcatggagctatgagcatttgcagacactctcattccctctcatggacccatgacca 1952 Query: 349 agttcccagcactgctatagcataggttagctgaatggtccatcggtgtggctctgaaag 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1951 agttcccagcactgctatagcataggttagctgaatggtccatcggtgtggctctgaaag 1892 Query: 409 taaacccttcgttacctttctcttctctcgaaccatacatgcggccagcagagtttcctt 468 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 1891 taaacccttcgttacctttctcttctctcgaaccatacatgcgggcagcagagtttcctt 1832 Query: 469 gtaccgctggcgctgccattgatgatggatgtctcatgttgccgtacatcgaacccatgg 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1831 gtaccgctggcgctgccattgatgatggatgtctcatgttgccgtacatcgaacccatgg 1772 Query: 529 tttgcatttgatactgcatctggtcaggacctgaagactgcatttggtttgtcgcgtcgc 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1771 tttgcatttgatactgcatctggtcaggacctgaagactgcatttggtttgtcgcgtcgc 1712 Query: 589 tgtggtttgggctgattccaacaccaagatcaagactgacagtgtcggtttca 641 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1711 tgtggtttgggctgattccaacaccaagatcaagactgacagtgtcggtttca 1659
>gb|BT009430.1| Triticum aestivum clone wlmk1.pk0035.d9:fis, full insert mRNA sequence Length = 2158 Score = 882 bits (445), Expect = 0.0 Identities = 565/602 (93%), Gaps = 6/602 (0%) Strand = Plus / Minus Query: 43 aaaccaaattctcataatctaattaattaatcatattaggttcgctgtacaacgaatgta 102 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2151 aaaccaaattctcataatctaattaattaatcatattaggttcgctgtacaacgaatgta 2092 Query: 103 gggctgcaatgctacatacagcaagggccttttccgcacttaaaaagacacatgcgtatt 162 || ||||| ||||||||||||| ||||||||||||| | |||||||||||||||| ||| Sbjct: 2091 ggtctgcagcgctacatacagcaggggccttttccgcgcctaaaaagacacatgcgcatt 2032 Query: 163 tgctgcagtcccccaggtatagcttatactagcatacttgcctccggctgaactgacttg 222 ||||||||||| |||||||||||||||| || |||||||||| ||||||||||||||| Sbjct: 2031 tgctgcagtcctccaggtatagcttata---gcttacttgcctctggctgaactgacttg 1975 Query: 223 taaccgatacacaattgagaatcttgctgaagagattgtcattacaaa-gcattgttggt 281 |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||| || Sbjct: 1974 taaccgatacacaattaagaatcttgctgaagagattgtcgttacaaaagcattgtttgt 1915 Query: 282 aatatatgattcatggagctatgagcatttgcagacactctcat--tccctctcatggac 339 |||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||||| Sbjct: 1914 aatatatgattcatggagctataagcatttgctgacactctcatcattcctctcatggac 1855 Query: 340 ccatgaccaagttcccagcactgctatagcataggttagctgaatggtccatcggtgtgg 399 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1854 ccatgaccaagttcccagcaccgctatagcataggttagctgaatggtccatcggtgtgg 1795 Query: 400 ctctgaaagtaaacccttcgttacctttctcttctctcgaaccatacatgcggccagcag 459 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1794 ctctgaaagtaaacccttcgttacctttctcttctctggaaccatacatgcggccagcag 1735 Query: 460 agtttccttgtaccgctggcgctgccattgatgatggatgtctcatgttgccgtacatcg 519 ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 1734 agtttccttgtaccgttggcactgccattgatgatggatgtctcatgttgccgtacatcg 1675 Query: 520 aacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggtttg 579 || |||||| |||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct: 1674 aagccatggattgcatctggtactgcatctgatcaggacctgaagactgcatttggtttg 1615 Query: 580 tcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactgacagtgtcggttt 639 | || ||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||| Sbjct: 1614 tggcatcgctgtggttcgggctgatcccaacaccaaggtcaagactgacattgtcggttt 1555 Query: 640 ca 641 || Sbjct: 1554 ca 1553
>ref|XM_478906.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2328 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 519 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 578 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 1719 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 1660 Query: 579 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 627 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 1659 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 1611 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Minus Query: 329 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 388 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 1906 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 1847 Query: 389 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 445 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 1846 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 1790 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/68 (85%), Gaps = 4/68 (5%) Strand = Plus / Minus Query: 243 atcttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagcta 302 ||||| ||||||||| ||||| ||| |||||||| |||||||||||||| | |||||| Sbjct: 1978 atctttctgaagagaatgtcaatacgaagcattg---gtaatatatgattc-tcgagcta 1923 Query: 303 tgagcatt 310 | |||||| Sbjct: 1922 taagcatt 1915
>gb|AY341850.1| Oryza sativa (japonica cultivar-group) WRKY9 mRNA, complete cds Length = 2068 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 519 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 578 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 1747 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 1688 Query: 579 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 627 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 1687 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 1639 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Minus Query: 329 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 388 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 1934 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 1875 Query: 389 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 445 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 1874 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 1818
>tpg|BK005212.1| TPA: TPA_inf: Oryza sativa WRKY transcription factor 78 (WRKY78) gene, complete cds Length = 5003 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 519 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 578 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 4819 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 4760 Query: 579 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 627 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 4759 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 4711 Score = 87.7 bits (44), Expect = 4e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 366 tagcataggttagctgaatggtccatcggtgtggctctgaaagtaaacccttcgttacct 425 ||||||| |||||| ||||||||||||||||||||| |||||||||| ||||| || | Sbjct: 4969 tagcataagttagccgaatggtccatcggtgtggctttgaaagtaaaaccttcactaggt 4910 Query: 426 ttctcttctctcgaaccata 445 || ||||||||||||||||| Sbjct: 4909 ttttcttctctcgaaccata 4890
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 519 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 578 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 23601167 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 23601226 Query: 579 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 627 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 23601227 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 23601275 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Plus Query: 329 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 388 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 23600980 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 23601039 Query: 389 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 445 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 23601040 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 23601096 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/68 (85%), Gaps = 4/68 (5%) Strand = Plus / Plus Query: 243 atcttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagcta 302 ||||| ||||||||| ||||| ||| |||||||| |||||||||||||| | |||||| Sbjct: 23600908 atctttctgaagagaatgtcaatacgaagcattg---gtaatatatgattc-tcgagcta 23600963 Query: 303 tgagcatt 310 | |||||| Sbjct: 23600964 taagcatt 23600971
>dbj|AP003747.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1127_E01 Length = 123787 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Plus Query: 519 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 578 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 53608 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 53667 Query: 579 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 627 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 53668 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 53716 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Plus Query: 329 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 388 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 53421 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 53480 Query: 389 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 445 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 53481 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 53537 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/68 (85%), Gaps = 4/68 (5%) Strand = Plus / Plus Query: 243 atcttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagcta 302 ||||| ||||||||| ||||| ||| |||||||| |||||||||||||| | |||||| Sbjct: 53349 atctttctgaagagaatgtcaatacgaagcattg---gtaatatatgattc-tcgagcta 53404 Query: 303 tgagcatt 310 | |||||| Sbjct: 53405 taagcatt 53412
>dbj|AK070537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062H03, full insert sequence Length = 2328 Score = 129 bits (65), Expect = 1e-26 Identities = 98/109 (89%) Strand = Plus / Minus Query: 519 gaacccatggtttgcatttgatactgcatctggtcaggacctgaagactgcatttggttt 578 |||||||||| |||||||||||||||||||| |||| | |||| ||||||| ||||||| Sbjct: 1719 gaacccatgggctgcatttgatactgcatctgatcagaaactgaggactgcaattggttt 1660 Query: 579 gtcgcgtcgctgtggtttgggctgattccaacaccaagatcaagactga 627 || || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 1659 gtggcatcgctgtggttcgggctgattccaacaccaagatcaaggctga 1611 Score = 89.7 bits (45), Expect = 1e-14 Identities = 99/117 (84%) Strand = Plus / Minus Query: 329 ctctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtc 388 |||||| ||||||||||| || || || || | || ||||||| |||||| |||||||| Sbjct: 1906 ctctcacggacccatgactaaattgccggcggtactgtagcataagttagccgaatggtc 1847 Query: 389 catcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccata 445 ||||||||||||| |||||||||| ||||| || ||| ||||||||||||||||| Sbjct: 1846 catcggtgtggctttgaaagtaaaaccttcactaggtttttcttctctcgaaccata 1790 Score = 44.1 bits (22), Expect = 0.56 Identities = 58/68 (85%), Gaps = 4/68 (5%) Strand = Plus / Minus Query: 243 atcttgctgaagagattgtcattacaaagcattgttggtaatatatgattcatggagcta 302 ||||| ||||||||| ||||| ||| |||||||| |||||||||||||| | |||||| Sbjct: 1978 atctttctgaagagaatgtcaatacgaagcattg---gtaatatatgattc-tcgagcta 1923 Query: 303 tgagcatt 310 | |||||| Sbjct: 1922 taagcatt 1915
>gb|AY105754.1| Zea mays PCO084191 mRNA sequence Length = 1179 Score = 99.6 bits (50), Expect = 1e-17 Identities = 107/126 (84%) Strand = Plus / Minus Query: 331 ctcatggacccatgaccaagttcccagcactgctatagcataggttagctgaatggtcca 390 ||||||||||||| || ||||| |||||||| || || |||| ||||||||| |||||| Sbjct: 780 ctcatggacccatcactaagttaccagcactactgtaacataagttagctgatcggtcca 721 Query: 391 tcggtgtggctctgaaagtaaacccttcgttacctttctcttctctcgaaccatacatgc 450 |||| ||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||| Sbjct: 720 aaggtgcagctttgaaagtaaacccttcgtttcctttttcttctctggaaccgtacatgc 661 Query: 451 ggccag 456 ||||| Sbjct: 660 tgccag 655 Score = 71.9 bits (36), Expect = 2e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 532 gcatttgatactgcatctggtcaggacctgaagactgcatttggtttgtcgcgtcgctgt 591 |||| ||||||||||| | || ||| |||| | |||||| |||||||| || ||||||| Sbjct: 594 gcatctgatactgcataggttctggaactgagggctgcatctggtttgttgcatcgctgt 535 Query: 592 ggtttgggctgattccaacaccaagatcaagactga 627 |||| |||||||| || |||||||| |||||||||| Sbjct: 534 ggttagggctgatacctacaccaaggtcaagactga 499 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 44 aaccaaattctcataatctaattaat 69 ||||||||| |||||||||||||||| Sbjct: 1030 aaccaaattatcataatctaattaat 1005
>ref|XM_751992.1| Ustilago maydis 521 hypothetical protein (UM00938.1) partial mRNA Length = 1416 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 605 tccaacaccaagatcaagactgaca 629 ||||||| ||||||||||||||||| Sbjct: 532 tccaacaacaagatcaagactgaca 556
>emb|AL669986.1|NCB7N14 Neurospora crassa DNA linkage group II BAC clone B7N14 Length = 107947 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 gcgctgccattgatgatggat 498 ||||||||||||||||||||| Sbjct: 64829 gcgctgccattgatgatggat 64849
>emb|BX663528.10| Zebrafish DNA sequence from clone DKEYP-47F9 in linkage group 17, complete sequence Length = 193986 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 58 aatctaattaattaatcatat 78 ||||||||||||||||||||| Sbjct: 88674 aatctaattaattaatcatat 88654
>gb|AC111110.21| Mus musculus chromosome 1, clone RP23-201B13, complete sequence Length = 246043 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 tctaattaattaatcatatt 79 |||||||||||||||||||| Sbjct: 49207 tctaattaattaatcatatt 49188
>ref|XR_003380.1| PREDICTED: Mus musculus similar to glyceraldehyde-3-phosphate dehydrogenase (LOC383692), mRNA Length = 1023 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 attgtcattacaaagcattg 276 |||||||||||||||||||| Sbjct: 874 attgtcattacaaagcattg 855
>emb|BX296553.6| Zebrafish DNA sequence from clone CH211-222G19 in linkage group 8, complete sequence Length = 108215 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 aagactgcatttggtttgtc 581 |||||||||||||||||||| Sbjct: 40903 aagactgcatttggtttgtc 40922
>dbj|AB242299.1| Asterias amurensis PKA-R mRNA for protein kinase A regulatory subunit, complete cds Length = 2300 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 tgctacatacagcaagggcc 131 |||||||||||||||||||| Sbjct: 1040 tgctacatacagcaagggcc 1059
>gb|AC110266.15| Mus musculus chromosome 1, clone RP23-319C1, complete sequence Length = 177482 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 tctaattaattaatcatatt 79 |||||||||||||||||||| Sbjct: 146977 tctaattaattaatcatatt 146958
>emb|CT485797.2| Medicago truncatula chromosome 5 clone mth4-11a3, COMPLETE SEQUENCE Length = 211224 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 ttcgttacctttctcttctc 435 |||||||||||||||||||| Sbjct: 187732 ttcgttacctttctcttctc 187751
>emb|CT009651.1| Medicago truncatula chromosome 5 clone mte1-70c15, COMPLETE SEQUENCE Length = 110880 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ttcgttacctttctcttctc 435 |||||||||||||||||||| Sbjct: 107830 ttcgttacctttctcttctc 107811
>emb|AL732317.13| Mouse DNA sequence from clone RP23-139F8 on chromosome 2, complete sequence Length = 222471 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 attgtcattacaaagcattg 276 |||||||||||||||||||| Sbjct: 86209 attgtcattacaaagcattg 86228 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,459,414 Number of Sequences: 3902068 Number of extensions: 5459414 Number of successful extensions: 107677 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107567 Number of HSP's gapped (non-prelim): 101 length of query: 641 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 618 effective length of database: 17,143,297,704 effective search space: 10594557981072 effective search space used: 10594557981072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
