ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags13p03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100223.1| Oryza sativa (japonica cultivar-group) cDNA clon... 658 0.0
2ref|NM_193577.1| Oryza sativa (japonica cultivar-group), predic... 656 0.0
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 260 5e-66
4dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic D... 260 5e-66
5gb|BT017548.1| Zea mays clone EL01N0423H02.c mRNA sequence 180 4e-42
6ref|XM_741410.1| Aspergillus fumigatus Af293 hypothetical protei... 46 0.15
7gb|AC008008.2| Homo sapiens Xp22 PAC RPCI6-102 (Roswell Park Can... 44 0.60
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
9dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.60
10dbj|AK059857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.60
11dbj|AP002782.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 44 0.60
12gb|BT013287.1| Lycopersicon esculentum clone 134897R, mRNA sequence 42 2.4
13gb|AC023050.36| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Can... 42 2.4
14gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Can... 42 2.4
15gb|DQ284465.1| Solanum tuberosum clone 096G02 3'-5' exonuclease ... 42 2.4
16gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 9.4
17gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 9.4
18gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosom... 40 9.4
19gb|AC126448.3| Mus musculus BAC clone RP23-359M2 from chromosome... 40 9.4
20gb|AC136699.23| Mus musculus chromosome 9, clone RP23-18E24, com... 40 9.4
21ref|XM_446615.1| Candida glabrata CBS138, CAGL0G05830g partial mRNA 40 9.4
22gb|AC128669.4| Mus musculus BAC clone RP24-115D21 from chromosom... 40 9.4
23emb|BX005268.26| Zebrafish DNA sequence from clone DKEY-11L22 in... 40 9.4
24emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 i... 40 9.4
25ref|XM_724330.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 9.4
26gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, comple... 40 9.4
27emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in ... 40 9.4
28emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chro... 40 9.4
29emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on ch... 40 9.4
30emb|AL096863.13|HS1119I23 Human DNA sequence from clone RP5-1119... 40 9.4
31emb|CR380953.1| Candida glabrata strain CBS138 chromosome G comp... 40 9.4
32emb|AL161982.1|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761... 40 9.4
33emb|CR388146.9| Zebrafish DNA sequence from clone DKEY-205F14 in... 40 9.4
34emb|CR293500.7| Zebrafish DNA sequence from clone DKEY-211I20 in... 40 9.4
35emb|BX511020.10| Zebrafish DNA sequence from clone RP71-9C18, co... 40 9.4
36ref|XM_698012.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 9.4
37emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on ch... 40 9.4
38emb|AL807749.21| Zebrafish DNA sequence from clone CH211-197F20,... 40 9.4
39emb|BX324003.7| Zebrafish DNA sequence from clone DKEY-81I14 in ... 40 9.4
40emb|BX276122.23| Zebrafish DNA sequence from clone CH211-232H22,... 40 9.4
41emb|AL732504.23| Mouse DNA sequence from clone RP23-177I18 on ch... 40 9.4
42gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Canc... 40 9.4
43ref|NM_067199.1| Caenorhabditis elegans Y75B8A.28 (Y75B8A.28) mR... 40 9.4
44emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in ... 40 9.4
45gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete ... 40 9.4
46emb|BX649616.5| Zebrafish DNA sequence from clone CH211-165K17 i... 40 9.4
47emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 i... 40 9.4
48emb|BX510947.20| Zebrafish DNA sequence from clone DKEY-226F16 i... 40 9.4
49emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, compl... 40 9.4
50emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in... 40 9.4
51emb|BX649283.16| Zebrafish DNA sequence from clone DKEYP-86C4 in... 40 9.4
52gb|U22443.1|EFU22443 Ellobius fuscocapillus sex-determining prot... 40 9.4 
>dbj|AK100223.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047H21, full
            insert sequence
          Length = 1245

 Score =  658 bits (332), Expect = 0.0
 Identities = 531/596 (89%), Gaps = 1/596 (0%)
 Strand = Plus / Minus

                                                                        
Query: 91   ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 150
            ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 1082 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 1023

                                                                        
Query: 151  ggtccaatgatgaataccctatctggaggcccctttgcaccaccgatatggatttcaaca 210
            |||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||
Sbjct: 1022 ggtccaatgatgaataccctgtctggaggtccctttgcaccaccaatatggatttcaaca 963

                                                                        
Query: 211  ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 270
            ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 962  ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 903

                                                                        
Query: 271  tttccaggaggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagct 330
            || |||||||||||||| ||||  || ||||||||||| |||||||||   || |||| |
Sbjct: 902  ttgccaggaggcacatccaagactgacaggatatccacctcaggaacataaacatcaggt 843

                                                                        
Query: 331  tcaatgtcatcagggacagttggaagaggtggccaatctgcctgctggttgtcatttatg 390
            ||||| |||||||||||||||||||||||||||||||| || | || |||||||||||||
Sbjct: 842  tcaatttcatcagggacagttggaagaggtggccaatccgcatacttgttgtcatttatg 783

                                                                        
Query: 391  caaaagcacctgcagtatagctcacttcgtactgccagacgccatgaggatactttgctt 450
            |||||||||||||||||||||||||| || |||| |||||||||| | ||||||||||||
Sbjct: 782  caaaagcacctgcagtatagctcactgcgaactgacagacgccataaagatactttgctt 723

                                                                        
Query: 451  aacttctccatcattttctcatgtatattgagaaggaagcgcacatcatctgttgctggc 510
            ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||
Sbjct: 722  aacttctccatcattttctcatgtatactgagaaggaagcggacatcatctgtggct-gc 664

                                                                        
Query: 511  tcgtatcatcatttcagacaagggcctatttttccagaaatttgggtcctgccttagaag 570
            ||| |||||||||||||| || |||||||   |||| || || |||||||||||||||||
Sbjct: 663  tcgaatcatcatttcagataaaggcctatgcgtccaaaagttagggtcctgccttagaag 604

                                                                        
Query: 571  ggtacggacttcttccttttcaggatatggcattccacaatagcgaggatcagcaagaag 630
            ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||| ||
Sbjct: 603  ggtacggacttcttccttttcaggatatgccattccacaatatcggggatcagcaaggag 544

                                                                    
Query: 631  gctcacgaaggatatgtaaacatcatatgctctctttttaccttcctgctcttcta 686
            ||| || || ||||||||  |||| ||| |||||||||| ||||||||||| ||||
Sbjct: 543  gctgacaaaagatatgtactcatcgtatcctctctttttcccttcctgctcctcta 488



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 17   agtaccacatgcatttctgtat 38
            ||||||||||||||||||||||
Sbjct: 1177 agtaccacatgcatttctgtat 1156
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>ref|NM_193577.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1209

 Score =  656 bits (331), Expect = 0.0
 Identities = 524/587 (89%), Gaps = 1/587 (0%)
 Strand = Plus / Minus

                                                                        
Query: 100  tccagcattcggcccctcaggatagcctccgcctttctgacttccttcactggtccaatg 159
            |||||||| ||||| |  ||||||||||| || ||||||||||||| |||||||||||||
Sbjct: 1202 tccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcactggtccaatg 1143

                                                                        
Query: 160  atgaataccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaagat 219
            ||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 1142 atgaataccctgtctggaggtccctttgcaccaccaatatggatttcaacattgcaagat 1083

                                                                        
Query: 220  tctttcacggccattattgacgatccttttctgccaataacgcgtcccatttttccagga 279
             |||||||  |||||||||| |||||||||||||||||||| || |||||||| ||||||
Sbjct: 1082 gctttcacttccattattgatgatccttttctgccaataacacgccccattttgccagga 1023

                                                                        
Query: 280  ggcacatctaagagcgaaaggatatccacttcaggaacacggacttcagcttcaatgtca 339
            |||||||| ||||  || ||||||||||| |||||||||   || |||| |||||| |||
Sbjct: 1022 ggcacatccaagactgacaggatatccacctcaggaacataaacatcaggttcaatttca 963

                                                                        
Query: 340  tcagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcac 399
            ||||||||||||||||||||||||||||| || | || ||||||||||||||||||||||
Sbjct: 962  tcagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcac 903

                                                                        
Query: 400  ctgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcc 459
            ||||||||||||||||| || |||| |||||||||| | |||||||||||||||||||||
Sbjct: 902  ctgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcc 843

                                                                        
Query: 460  atcattttctcatgtatattgagaaggaagcgcacatcatctgttgctggctcgtatcat 519
            |||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||| |||||
Sbjct: 842  atcattttctcatgtatactgagaaggaagcggacatcatctgtggct-gctcgaatcat 784

                                                                        
Query: 520  catttcagacaagggcctatttttccagaaatttgggtcctgccttagaagggtacggac 579
            ||||||||| || |||||||   |||| || || ||||||||||||||||||||||||||
Sbjct: 783  catttcagataaaggcctatgcgtccaaaagttagggtcctgccttagaagggtacggac 724

                                                                        
Query: 580  ttcttccttttcaggatatggcattccacaatagcgaggatcagcaagaaggctcacgaa 639
            |||||||||||||||||||| |||||||||||| || ||||||||||| ||||| || ||
Sbjct: 723  ttcttccttttcaggatatgccattccacaatatcggggatcagcaaggaggctgacaaa 664

                                                           
Query: 640  ggatatgtaaacatcatatgctctctttttaccttcctgctcttcta 686
             ||||||||  |||| ||| |||||||||| ||||||||||| ||||
Sbjct: 663  agatatgtactcatcgtatcctctctttttcccttcctgctcctcta 617
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  260 bits (131), Expect = 5e-66
 Identities = 183/199 (91%), Gaps = 1/199 (0%)
 Strand = Plus / Plus

                                                                            
Query: 341      cagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcacc 400
                |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 21696812 cagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcacc 21696871

                                                                            
Query: 401      tgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcca 460
                |||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct: 21696872 tgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcca 21696931

                                                                            
Query: 461      tcattttctcatgtatattgagaaggaagcgcacatcatctgttgctggctcgtatcatc 520
                ||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||| ||||||
Sbjct: 21696932 tcattttctcatgtatactgagaaggaagcggacatcatctgtggct-gctcgaatcatc 21696990

                                   
Query: 521      atttcagacaagggcctat 539
                |||||||| || |||||||
Sbjct: 21696991 atttcagataaaggcctat 21697009



 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                            
Query: 211      ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 270
                ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 21696325 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 21696384

                                                                
Query: 271      tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 318
                || |||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 21696385 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 21696432



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                                 
Query: 558      cctgccttagaagggtacggacttcttccttttcaggatatggcattcc 606
                |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 21697201 cctgccttagaagggtacggacttcttccttttcaggatatgccattcc 21697249



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                            
Query: 91       ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 150
                ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 21695275 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 21695334

                                  
Query: 151      ggtccaatgatgaatacc 168
                ||||||||||||||||||
Sbjct: 21695335 ggtccaatgatgaatacc 21695352



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                    
Query: 165      taccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaa 216
                |||||| |||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct: 21696183 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 21696234



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                            
Query: 605      ccacaatagcgaggatcagcaagaaggctcacgaaggatatgtaaacatcatatgctctc 664
                |||||||| || ||||||||||| ||||| || || ||||||||  |||| ||| |||||
Sbjct: 21698131 ccacaatatcggggatcagcaaggaggctgacaaaagatatgtactcatcgtatcctctc 21698190

                                      
Query: 665      tttttaccttcctgctcttcta 686
                ||||| ||||||||||| ||||
Sbjct: 21698191 tttttcccttcctgctcctcta 21698212



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 17       agtaccacatgcatttctgtat 38
                ||||||||||||||||||||||
Sbjct: 21695180 agtaccacatgcatttctgtat 21695201
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>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0002B05
          Length = 141275

 Score =  260 bits (131), Expect = 5e-66
 Identities = 183/199 (91%), Gaps = 1/199 (0%)
 Strand = Plus / Plus

                                                                         
Query: 341   cagggacagttggaagaggtggccaatctgcctgctggttgtcatttatgcaaaagcacc 400
             |||||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 48863 cagggacagttggaagaggtggccaatccgcatacttgttgtcatttatgcaaaagcacc 48922

                                                                         
Query: 401   tgcagtatagctcacttcgtactgccagacgccatgaggatactttgcttaacttctcca 460
             |||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct: 48923 tgcagtatagctcactgcgaactgacagacgccataaagatactttgcttaacttctcca 48982

                                                                         
Query: 461   tcattttctcatgtatattgagaaggaagcgcacatcatctgttgctggctcgtatcatc 520
             ||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||| ||||||
Sbjct: 48983 tcattttctcatgtatactgagaaggaagcggacatcatctgtggct-gctcgaatcatc 49041

                                
Query: 521   atttcagacaagggcctat 539
             |||||||| || |||||||
Sbjct: 49042 atttcagataaaggcctat 49060



 Score =  119 bits (60), Expect = 1e-23
 Identities = 96/108 (88%)
 Strand = Plus / Plus

                                                                         
Query: 211   ttgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccatt 270
             ||||||||| |||||||  |||||||||| |||||||||||||||||||| || ||||||
Sbjct: 48376 ttgcaagatgctttcacttccattattgatgatccttttctgccaataacacgccccatt 48435

                                                             
Query: 271   tttccaggaggcacatctaagagcgaaaggatatccacttcaggaaca 318
             || |||||||||||||| ||||  || ||||||||||| |||||||||
Sbjct: 48436 ttgccaggaggcacatccaagactgacaggatatccacctcaggaaca 48483



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 48/49 (97%)
 Strand = Plus / Plus

                                                              
Query: 558   cctgccttagaagggtacggacttcttccttttcaggatatggcattcc 606
             |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 49252 cctgccttagaagggtacggacttcttccttttcaggatatgccattcc 49300



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 91    ctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcact 150
             ||||| || |||||||| ||||| |  ||||||||||| || ||||||||||||| ||||
Sbjct: 47326 ctctagaactccagcatgcggcctcggaggatagcctcagcttttctgacttcctgcact 47385

                               
Query: 151   ggtccaatgatgaatacc 168
             ||||||||||||||||||
Sbjct: 47386 ggtccaatgatgaatacc 47403



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                 
Query: 165   taccctatctggaggcccctttgcaccaccgatatggatttcaacattgcaa 216
             |||||| |||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct: 48234 taccctgtctggaggtccctttgcaccaccaatatggatttcaacactgcaa 48285



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 70/82 (85%)
 Strand = Plus / Plus

                                                                         
Query: 605   ccacaatagcgaggatcagcaagaaggctcacgaaggatatgtaaacatcatatgctctc 664
             |||||||| || ||||||||||| ||||| || || ||||||||  |||| ||| |||||
Sbjct: 50182 ccacaatatcggggatcagcaaggaggctgacaaaagatatgtactcatcgtatcctctc 50241

                                   
Query: 665   tttttaccttcctgctcttcta 686
             ||||| ||||||||||| ||||
Sbjct: 50242 tttttcccttcctgctcctcta 50263



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 17    agtaccacatgcatttctgtat 38
             ||||||||||||||||||||||
Sbjct: 47231 agtaccacatgcatttctgtat 47252
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>gb|BT017548.1| Zea mays clone EL01N0423H02.c mRNA sequence
          Length = 428

 Score =  180 bits (91), Expect = 4e-42
 Identities = 160/183 (87%)
 Strand = Plus / Minus

                                                                       
Query: 90  tctctaaaattccagcattcggcccctcaggatagcctccgcctttctgacttccttcac 149
           |||||| || |||||||||||||| || | ||| ||||| || || |||||||| |||||
Sbjct: 193 tctctagaactccagcattcggcctctgaagatggcctcggctttcctgacttcattcac 134

                                                                       
Query: 150 tggtccaatgatgaataccctatctggaggcccctttgcaccaccgatatggatttcaac 209
           || |||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 133 tgatccaatgatgaaaaccctatctggaggccccttagcaccaccaatatggatttcaac 74

                                                                       
Query: 210 attgcaagattctttcacggccattattgacgatccttttctgccaataacgcgtcccat 269
            |||||||||||||||||  ||||||| |  || || |||||||||||||| ||||||||
Sbjct: 73  gttgcaagattctttcacaaccattatagttgacccctttctgccaataactcgtcccat 14

              
Query: 270 ttt 272
           |||
Sbjct: 13  ttt 11
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>ref|XM_741410.1| Aspergillus fumigatus Af293 hypothetical protein (Afu4g03170)
           partial mRNA
          Length = 564

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 244 ccttttctgccaataacgcgtcc 266
           |||||||||||||||||||||||
Sbjct: 139 ccttttctgccaataacgcgtcc 161
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>gb|AC008008.2| Homo sapiens Xp22 PAC RPCI6-102 (Roswell Park Cancer Institute Human
             PAC Library) complete sequence
          Length = 167257

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 463   attttctcatgtatattgagaa 484
             ||||||||||||||||||||||
Sbjct: 59256 attttctcatgtatattgagaa 59235
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 582      cttccttttcaggatatggcat 603
                ||||||||||||||||||||||
Sbjct: 13045049 cttccttttcaggatatggcat 13045028
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>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0531C01
          Length = 158574

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 582   cttccttttcaggatatggcat 603
             ||||||||||||||||||||||
Sbjct: 83850 cttccttttcaggatatggcat 83829
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>dbj|AK059857.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-B02, full
           insert sequence
          Length = 1138

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 582 cttccttttcaggatatggcat 603
           ||||||||||||||||||||||
Sbjct: 30  cttccttttcaggatatggcat 51
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>dbj|AP002782.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-660M18, complete
             sequences
          Length = 153078

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 21    ccacatgcatttctgtattcct 42
             ||||||||||||||||||||||
Sbjct: 24785 ccacatgcatttctgtattcct 24764
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>gb|BT013287.1| Lycopersicon esculentum clone 134897R, mRNA sequence
          Length = 1244

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ttctgccaataacgcgtcccatttt 272
           ||||||||||||| |||||||||||
Sbjct: 889 ttctgccaataacacgtcccatttt 865
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>gb|AC023050.36| Homo sapiens 12 BAC RP11-428G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186864

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 356    gaggtggccaatctgcctgct 376
              |||||||||||||||||||||
Sbjct: 135064 gaggtggccaatctgcctgct 135044
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>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 131209

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 334    atgtcatcagggacagttgga 354
              |||||||||||||||||||||
Sbjct: 113158 atgtcatcagggacagttgga 113138
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>gb|DQ284465.1| Solanum tuberosum clone 096G02 3'-5' exonuclease domain-containing
           protein-like mRNA, complete cds
          Length = 1249

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 248 ttctgccaataacgcgtcccatttt 272
           ||||||||||||| |||||||||||
Sbjct: 867 ttctgccaataacacgtcccatttt 843
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>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    tcacggccattattgacgat 243
              ||||||||||||||||||||
Sbjct: 939367 tcacggccattattgacgat 939386
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     atggatttcaacattgcaag 217
               ||||||||||||||||||||
Sbjct: 4500152 atggatttcaacattgcaag 4500171
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>gb|AC161587.2| Mus musculus BAC clone RP24-492G17 from chromosome 9, complete sequence
          Length = 176237

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 461   tcattttctcatgtatattgagaa 484
             ||||||||||||||| ||||||||
Sbjct: 27965 tcattttctcatgtaaattgagaa 27942
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>gb|AC126448.3| Mus musculus BAC clone RP23-359M2 from chromosome 17, complete
            sequence
          Length = 207537

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 661  tctctttttaccttcctgct 680
            ||||||||||||||||||||
Sbjct: 3990 tctctttttaccttcctgct 4009
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>gb|AC136699.23| Mus musculus chromosome 9, clone RP23-18E24, complete sequence
          Length = 229184

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 461    tcattttctcatgtatattgagaa 484
              ||||||||||||||| ||||||||
Sbjct: 186070 tcattttctcatgtaaattgagaa 186047
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>ref|XM_446615.1| Candida glabrata CBS138, CAGL0G05830g partial mRNA
          Length = 2532

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 453  cttctccatcattttctcat 472
            ||||||||||||||||||||
Sbjct: 1905 cttctccatcattttctcat 1886
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>gb|AC128669.4| Mus musculus BAC clone RP24-115D21 from chromosome 17, complete sequence
          Length = 169571

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 661    tctctttttaccttcctgct 680
              ||||||||||||||||||||
Sbjct: 146774 tctctttttaccttcctgct 146793
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>emb|BX005268.26| Zebrafish DNA sequence from clone DKEY-11L22 in linkage group 14,
              complete sequence
          Length = 182719

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 119686 caaaagtcctttctctaaaa 119705
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>emb|BX510909.19| Zebrafish DNA sequence from clone DKEY-195E19 in linkage group 5,
            complete sequence
          Length = 190731

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   caaaagtcctttctctaaaa 98
            ||||||||||||||||||||
Sbjct: 1964 caaaagtcctttctctaaaa 1983
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>ref|XM_724330.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00166)
           partial mRNA
          Length = 369

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 653 tcatatgctctctttttacc 672
           ||||||||||||||||||||
Sbjct: 70  tcatatgctctctttttacc 51
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>gb|AC072054.10| Homo sapiens BAC clone RP11-33P21 from 7, complete sequence
          Length = 154037

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 443    ctttgcttaacttctccatc 462
              ||||||||||||||||||||
Sbjct: 117696 ctttgcttaacttctccatc 117715
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>emb|CR383684.7| Zebrafish DNA sequence from clone DKEYP-69E1 in linkage group 3,
             complete sequence
          Length = 111124

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   tgcaccaccgatatggattt 205
             ||||||||||||||||||||
Sbjct: 15731 tgcaccaccgatatggattt 15712
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>emb|AL596179.3| Human DNA sequence from clone RP11-49A12 on chromosome 6, complete
              sequence
          Length = 169159

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ctttctctaaaattccagca 106
              ||||||||||||||||||||
Sbjct: 112313 ctttctctaaaattccagca 112294
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>emb|AL512510.13| Human DNA sequence from clone RP11-537P24 on chromosome 6 Contains a CpG
              island, complete sequence
          Length = 170970

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 23     acatgcatttctgtattccttgtgttca 50
              |||| |||||||||||||| ||||||||
Sbjct: 139743 acattcatttctgtattccctgtgttca 139716
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>emb|AL096863.13|HS1119I23 Human DNA sequence from clone RP5-1119I23 on chromosome 10, complete
             sequence
          Length = 98818

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   caacattgcaagattctttc 225
             ||||||||||||||||||||
Sbjct: 23506 caacattgcaagattctttc 23487
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>emb|CR380953.1| Candida glabrata strain CBS138 chromosome G complete sequence
          Length = 992211

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    cttctccatcattttctcat 472
              ||||||||||||||||||||
Sbjct: 562570 cttctccatcattttctcat 562589
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>emb|AL161982.1|HSM802585 Homo sapiens genomic DNA; cDNA DKFZp761J1224 (from clone
            DKFZp761J1224)
          Length = 5412

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 206  caacattgcaagattctttc 225
            ||||||||||||||||||||
Sbjct: 2048 caacattgcaagattctttc 2029
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>emb|CR388146.9| Zebrafish DNA sequence from clone DKEY-205F14 in linkage group 5,
             complete sequence
          Length = 19924

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 19888 caaaagtcctttctctaaaa 19907
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>emb|CR293500.7| Zebrafish DNA sequence from clone DKEY-211I20 in linkage group 18,
              complete sequence
          Length = 164140

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 136757 caaaagtcctttctctaaaa 136776
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>emb|BX511020.10| Zebrafish DNA sequence from clone RP71-9C18, complete sequence
          Length = 160830

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 17818 caaaagtcctttctctaaaa 17799
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>ref|XM_698012.1| PREDICTED: Danio rerio hypothetical protein LOC555615 (LOC555615),
           mRNA
          Length = 1101

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 453 cttctccatcattttctcatgtat 476
           ||||||||||||| ||||||||||
Sbjct: 795 cttctccatcattgtctcatgtat 772
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>emb|BX813317.11| Mouse DNA sequence from clone RP24-297H17 on chromosome 2, complete
             sequence
          Length = 157571

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 90135 caaaagtcctttctctaaaa 90116
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>emb|AL807749.21| Zebrafish DNA sequence from clone CH211-197F20, complete sequence
          Length = 198777

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 79   caaaagtcctttctctaaaa 98
            ||||||||||||||||||||
Sbjct: 9459 caaaagtcctttctctaaaa 9478
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>emb|BX324003.7| Zebrafish DNA sequence from clone DKEY-81I14 in linkage group 17,
              complete sequence
          Length = 247607

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 151546 caaaagtcctttctctaaaa 151527
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>emb|BX276122.23| Zebrafish DNA sequence from clone CH211-232H22, complete sequence
          Length = 186714

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 182384 caaaagtcctttctctaaaa 182403
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>emb|AL732504.23| Mouse DNA sequence from clone RP23-177I18 on chromosome 4, complete
             sequence
          Length = 192031

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 344   ggacagttggaagaggtggc 363
             ||||||||||||||||||||
Sbjct: 53883 ggacagttggaagaggtggc 53864
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>gb|AC021889.29| Homo sapiens 3 BAC RP11-554F8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 178752

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    attccttgtgttcaaaagat 56
             ||||||||||||||||||||
Sbjct: 60006 attccttgtgttcaaaagat 60025
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>ref|NM_067199.1| Caenorhabditis elegans Y75B8A.28 (Y75B8A.28) mRNA, complete cds
          Length = 1092

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 587 ttttcaggatatggcattccacaa 610
           ||||||||||||| ||||||||||
Sbjct: 412 ttttcaggatatgccattccacaa 435
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>emb|BX640584.10| Zebrafish DNA sequence from clone DKEY-78O7 in linkage group 14, complete
              sequence
          Length = 265520

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 103155 caaaagtcctttctctaaaa 103136
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>gb|AC153774.3| Loxodonta africana clone VMRC15-554J14, complete sequence
          Length = 136822

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 324    ttcagcttcaatgtcatcag 343
              ||||||||||||||||||||
Sbjct: 133796 ttcagcttcaatgtcatcag 133815
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>emb|BX649616.5| Zebrafish DNA sequence from clone CH211-165K17 in linkage group 18,
              complete sequence
          Length = 131062

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 117386 caaaagtcctttctctaaaa 117405
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>emb|AL928917.9| Zebrafish DNA sequence from clone CH211-103D12 in linkage group 1,
             complete sequence
          Length = 176961

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 453   cttctccatcattttctcatgtat 476
             ||||||||||||| ||||||||||
Sbjct: 83334 cttctccatcattgtctcatgtat 83311
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>emb|BX510947.20| Zebrafish DNA sequence from clone DKEY-226F16 in linkage group 4,
             complete sequence
          Length = 125275

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 21736 caaaagtcctttctctaaaa 21717
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>emb|AL033514.1|CEY75B8A Caenorhabditis elegans YAC Y75B8A, complete sequence
          Length = 298406

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 587    ttttcaggatatggcattccacaa 610
              ||||||||||||| ||||||||||
Sbjct: 251790 ttttcaggatatgccattccacaa 251813
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>emb|CR792418.18| Zebrafish DNA sequence from clone DKEY-59L11 in linkage group 4, complete
              sequence
          Length = 263674

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     caaaagtcctttctctaaaa 98
              ||||||||||||||||||||
Sbjct: 154217 caaaagtcctttctctaaaa 154236
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>emb|BX649283.16| Zebrafish DNA sequence from clone DKEYP-86C4 in linkage group 14,
             complete sequence
          Length = 193551

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    caaaagtcctttctctaaaa 98
             ||||||||||||||||||||
Sbjct: 14342 caaaagtcctttctctaaaa 14323
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>gb|U22443.1|EFU22443 Ellobius fuscocapillus sex-determining protein (Sry) gene, partial
           cds
          Length = 153

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 266 ccatttttccaggaggcaca 285
           ||||||||||||||||||||
Sbjct: 121 ccatttttccaggaggcaca 140


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,784,271
Number of Sequences: 3902068
Number of extensions: 6784271
Number of successful extensions: 130833
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 130562
Number of HSP's gapped (non-prelim): 267
length of query: 687
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 664
effective length of database: 17,143,297,704
effective search space: 11383149675456
effective search space used: 11383149675456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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