ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags14e03 |
|---|---|
| Clone Library Name | barley_pub |
>MTHR_ORYSA (Q75HE6) Probable methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 594 Score = 352 bits (903), Expect = 6e-97 Identities = 167/187 (89%), Positives = 180/187 (96%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQK 493 SSPWSELDGLQPET IIDDQLVK+N KGFLTINSQPAVN E+S+S SVGWGGPGGYVYQK Sbjct: 408 SSPWSELDGLQPETKIIDDQLVKINQKGFLTINSQPAVNGERSDSTSVGWGGPGGYVYQK 467 Query: 492 AYVEFFCAKEKLDQLIEKSKAFPSLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQ 313 AY+EFFC+KEKLDQLIEKSKAFPSLTYIAVNK+GES SNIP NAVNAVTWGVFPGKEI+Q Sbjct: 468 AYLEFFCSKEKLDQLIEKSKAFPSLTYIAVNKDGESFSNIPTNAVNAVTWGVFPGKEIVQ 527 Query: 312 PTVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISGDL 133 PTVVDSASFMVWKDEAFEIWS+GWACLFPEGDSSRE+L++VQK+Y LVSLVDNDYI+GDL Sbjct: 528 PTVVDSASFMVWKDEAFEIWSKGWACLFPEGDSSREILDKVQKSYFLVSLVDNDYINGDL 587 Query: 132 FAAFKEI 112 FAAFKEI Sbjct: 588 FAAFKEI 594
>MTHR1_MAIZE (Q9SE94) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (ZmMTHFR1) Length = 593 Score = 343 bits (879), Expect = 4e-94 Identities = 163/185 (88%), Positives = 173/185 (93%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQK 493 SSPWSELDGLQPET IIDDQLV +N KGFLTINSQPAVN EKS+SP+VGWGGPGGYVYQK Sbjct: 408 SSPWSELDGLQPETKIIDDQLVNINQKGFLTINSQPAVNGEKSDSPTVGWGGPGGYVYQK 467 Query: 492 AYVEFFCAKEKLDQLIEKSKAFPSLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQ 313 AY+EFFCAKEKLDQLIEK KAFPSLTYIAVNK+GE+ SNI NAVNAVTWGVFPGKEIIQ Sbjct: 468 AYLEFFCAKEKLDQLIEKIKAFPSLTYIAVNKDGETFSNISPNAVNAVTWGVFPGKEIIQ 527 Query: 312 PTVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISGDL 133 PTVVD ASFMVWKDEAFEIW+RGW C+FPEGDSSRELLE+VQKTY LVSLVDNDY+ GDL Sbjct: 528 PTVVDHASFMVWKDEAFEIWTRGWGCMFPEGDSSRELLEKVQKTYYLVSLVDNDYVQGDL 587 Query: 132 FAAFK 118 FAAFK Sbjct: 588 FAAFK 592
>MTHR1_ARATH (Q9SE60) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| (AtMTHFR1) Length = 592 Score = 291 bits (745), Expect = 1e-78 Identities = 135/184 (73%), Positives = 161/184 (87%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQK 493 SSPWSELDGLQPET II++QL K+NS GFLTINSQP+VNA KS+SP++GWGGPGGYVYQK Sbjct: 408 SSPWSELDGLQPETKIINEQLGKINSNGFLTINSQPSVNAAKSDSPAIGWGGPGGYVYQK 467 Query: 492 AYVEFFCAKEKLDQLIEKSKAFPSLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQ 313 AY+EFFC+K+KLD L+EKSKAFPS+TY+AVNK +SN + VNAVTWGVFP KE+IQ Sbjct: 468 AYLEFFCSKDKLDTLVEKSKAFPSITYMAVNKSENWVSNTGESDVNAVTWGVFPAKEVIQ 527 Query: 312 PTVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISGDL 133 PT+VD ASF VWKDEAFEIWSR WA L+PE D SR+LLE+V+ +Y LVSLVDN+YI+GD+ Sbjct: 528 PTIVDPASFKVWKDEAFEIWSRSWANLYPEDDPSRKLLEEVKNSYYLVSLVDNNYINGDI 587 Query: 132 FAAF 121 F+ F Sbjct: 588 FSVF 591
>MTHR2_ARATH (O80585) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| (AtMTHFR2) Length = 594 Score = 289 bits (740), Expect = 5e-78 Identities = 135/187 (72%), Positives = 161/187 (86%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQK 493 SSPWSELDGLQPET II++QL+K+NSKGFLTINSQP+VNAE+S+SP+VGWGGP GYVYQK Sbjct: 408 SSPWSELDGLQPETRIINEQLIKVNSKGFLTINSQPSVNAERSDSPTVGWGGPVGYVYQK 467 Query: 492 AYVEFFCAKEKLDQLIEKSKAFPSLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQ 313 AY+EFFC+KEKLD ++EK KA PS+TY+AVNK + +SN VNAVTWGVFP KEIIQ Sbjct: 468 AYLEFFCSKEKLDAVVEKCKALPSITYMAVNKGEQWVSNTAQADVNAVTWGVFPAKEIIQ 527 Query: 312 PTVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISGDL 133 PT+VD ASF VWKDEAFE WSR WA L+PE D SR LLE+V+ +Y LVSLV+NDYI+GD+ Sbjct: 528 PTIVDPASFNVWKDEAFETWSRSWANLYPEADPSRNLLEEVKNSYYLVSLVENDYINGDI 587 Query: 132 FAAFKEI 112 FA F ++ Sbjct: 588 FAVFADL 594
>MTHR_HUMAN (P42898) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 656 Score = 182 bits (463), Expect = 6e-46 Identities = 85/174 (48%), Positives = 121/174 (69%), Gaps = 1/174 (0%) Frame = -2 Query: 666 PWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQKAY 487 PW++ + L ET+++ ++L+++N +G LTINSQP +N + S P VGWG GGYV+QKAY Sbjct: 454 PWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPIVGWGPSGGYVFQKAY 512 Query: 486 VEFFCAKEKLDQLIEKSKAFP-SLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQP 310 +EFF ++E + L++ K + + Y VN +GE+I+N P NAVTWG+FPG+EIIQP Sbjct: 513 LEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQP 572 Query: 309 TVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDY 148 TVVD SFM WKDEAF +W W L+ E SR +++ + Y LV+LVDND+ Sbjct: 573 TVVDPVSFMFWKDEAFALWIERWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626
>MTHR_MACFA (Q60HE5) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 656 Score = 182 bits (462), Expect = 8e-46 Identities = 85/174 (48%), Positives = 121/174 (69%), Gaps = 1/174 (0%) Frame = -2 Query: 666 PWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQKAY 487 PW++ + L ET+++ ++L+++N +G LTINSQP +N + S P VGWG GGYV+QKAY Sbjct: 454 PWND-EPLAAETSLLKEELLRVNRQGILTINSQPNINGKPSSDPVVGWGPSGGYVFQKAY 512 Query: 486 VEFFCAKEKLDQLIEKSKAFP-SLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQP 310 +EFF ++E + L++ K + + Y VN +GE+I+N P NAVTWG+FPG+EIIQP Sbjct: 513 LEFFTSRETAEALLQVLKKYELRVNYHLVNVKGENITNAPELQPNAVTWGIFPGREIIQP 572 Query: 309 TVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDY 148 TVVD SFM WKDEAF +W W L+ E SR +++ + Y LV+LVDND+ Sbjct: 573 TVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRTIIQYIHDNYFLVNLVDNDF 626
>MTHR_MOUSE (Q9WU20) Methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 654 Score = 179 bits (455), Expect = 5e-45 Identities = 84/174 (48%), Positives = 122/174 (70%), Gaps = 1/174 (0%) Frame = -2 Query: 666 PWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQKAY 487 PW++ + L ET+++ ++L+++N G LTINSQP +NA+ S P VGWG GGYV+QKAY Sbjct: 453 PWND-EPLAAETSLMKEELLRVNRLGILTINSQPNINAKPSSDPVVGWGPSGGYVFQKAY 511 Query: 486 VEFFCAKEKLDQLIEKSKAFP-SLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQP 310 +EFF ++E ++ L++ K + + Y V+ +GE+I+N P NAVTWG+FPG+EIIQP Sbjct: 512 LEFFTSRETVEALLQVLKTYELRVNYHIVDVKGENITNAPELQPNAVTWGIFPGREIIQP 571 Query: 309 TVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDY 148 TVVD SFM WKDEAF +W W L+ E SR +++ + Y LV+LVDN++ Sbjct: 572 TVVDPISFMFWKDEAFALWIEQWGKLYEEESPSRMIIQYIHDNYFLVNLVDNEF 625
>MTHR1_SCHPO (Q10258) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| Length = 603 Score = 172 bits (435), Expect = 1e-42 Identities = 90/188 (47%), Positives = 117/188 (62%), Gaps = 1/188 (0%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQK 493 S PWS+L + E +I DQL+ MN FLTINSQPA+N EKS P GWG P GYV+QK Sbjct: 402 SLPWSDLP-ISDEADLIRDQLLSMNRNAFLTINSQPALNGEKSSHPVFGWGPPNGYVFQK 460 Query: 492 AYVEFFCAKEKLDQLIEKSKAFPSLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQ 313 YVEFF L++L E K S++Y NK G+ +N NAVTWGVFP +EIIQ Sbjct: 461 PYVEFFVHPSLLNELKETVKKLNSVSYFVTNKNGDLDTNSQYEIPNAVTWGVFPNREIIQ 520 Query: 312 PTVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISG-D 136 PT+V+S SF+ WKDEA+ + WA + SR+LL + K + L +VDND+ +G Sbjct: 521 PTIVESTSFLAWKDEAYSL-GMEWANAYSPDSISRKLLVSMMKEWFLCVIVDNDFQNGQS 579 Query: 135 LFAAFKEI 112 LF F ++ Sbjct: 580 LFDVFNKM 587
>MTHR_CAEEL (Q17693) Probable methylenetetrahydrofolate reductase (EC 1.5.1.20)| Length = 663 Score = 166 bits (420), Expect = 6e-41 Identities = 85/177 (48%), Positives = 113/177 (63%), Gaps = 4/177 (2%) Frame = -2 Query: 666 PWSELD-GLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQKA 490 PW+E + G+QPET++I +QLV N G LT+NSQP+VN S P VGWG PGGY YQKA Sbjct: 468 PWTEAETGVQPETSLISEQLVWCNENGILTVNSQPSVNGAPSTDPLVGWGKPGGYCYQKA 527 Query: 489 YVEFFCAKEKLDQLIE-KSKAFP-SLTYIAVNKEGE-SISNIPANAVNAVTWGVFPGKEI 319 Y+E F E D+LI+ + FP + Y A+NK+ +N AVTWGVFPG EI Sbjct: 528 YLECFMTAELSDKLIQIIEREFPVRVNYHAINKDSTFDKTNSEETTPIAVTWGVFPGSEI 587 Query: 318 IQPTVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDY 148 QPTVVD SF W+DEA+++W W +P+ S +++ V + LV+LVDND+ Sbjct: 588 AQPTVVDPLSFRAWRDEAYQMWMAQWGDFYPKESKSYGVIKAVHDEFRLVTLVDNDF 644
>MTHR2_YEAST (P53128) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| Length = 599 Score = 153 bits (386), Expect = 5e-37 Identities = 79/180 (43%), Positives = 112/180 (62%), Gaps = 3/180 (1%) Frame = -2 Query: 666 PWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQKAY 487 PWS++ + E I L+++N +TINSQP VN +S GWG GYVYQK Y Sbjct: 412 PWSDIP-INDEINPIKAHLIELNQHSIITINSQPQVNGIRSNDKIHGWGPKDGYVYQKQY 470 Query: 486 VEFFCAKEKLDQLIEKSKAFPSLTYIAVNKEGESISNIPANA-VNAVTWGVFPGKEIIQP 310 +EF K KL +LI+ K LTY A++ +G+ +SN P N+ NAVTWG+FPG+EI+QP Sbjct: 471 LEFMLPKTKLPKLIDTLKNNEFLTYFAIDSQGDLLSNHPDNSKSNAVTWGIFPGREILQP 530 Query: 309 TVVDSASFMVWKDEAFEIWSRGWACLFPEGDS--SRELLEQVQKTYCLVSLVDNDYISGD 136 T+V+ SF+ WK+E + I + W + D S + ++ + YCLV++VDNDYIS D Sbjct: 531 TIVEKISFLAWKEEFYHILNE-WKLNMNKYDKPHSAQFIQSLIDDYCLVNIVDNDYISPD 589
>MTHR1_YEAST (P46151) Methylenetetrahydrofolate reductase 1 (EC 1.5.1.20)| Length = 657 Score = 142 bits (358), Expect = 9e-34 Identities = 72/180 (40%), Positives = 106/180 (58%), Gaps = 3/180 (1%) Frame = -2 Query: 666 PWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQKAY 487 PWS+L GL ET +I ++L+++N +G+LT+ SQPA NA S GWG G +YQKA+ Sbjct: 470 PWSDL-GLSAETALIQEELIQLNYRGYLTLASQPATNATLSSDKIFGWGPAKGRLYQKAF 528 Query: 486 VEFFCAKEKLDQLIEKS---KAFPSLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEII 316 VE F +++ + ++ +Y A + G +N+ ++ + VTWGVFP + Sbjct: 529 VEMFIHRQQWETTLKPKLDHYGRRKFSYYAGDSSGSFETNLDPHSSSVVTWGVFPNSPVK 588 Query: 315 QPTVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISGD 136 Q T+++ SF W+DEAF IWS WA LFP + LL V K YCLVS+V +D+ D Sbjct: 589 QTTIIEEESFKAWRDEAFSIWSE-WAKLFPRNTPANILLRLVHKDYCLVSIVHHDFKETD 647
>MTHR2_SCHPO (O74927) Methylenetetrahydrofolate reductase 2 (EC 1.5.1.20)| Length = 641 Score = 139 bits (351), Expect = 6e-33 Identities = 70/174 (40%), Positives = 103/174 (59%) Frame = -2 Query: 666 PWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGWGGPGGYVYQKAY 487 PW + + ++ ET I L+K+N + T+ SQPAVN S P GWG GG V+QKA+ Sbjct: 457 PWID-EPVEVETKTIAKYLLKLNGNSWWTVGSQPAVNGAPSADPVFGWGPKGGRVFQKAF 515 Query: 486 VEFFCAKEKLDQLIEKSKAFPSLTYIAVNKEGESISNIPANAVNAVTWGVFPGKEIIQPT 307 VE F + L I K P +TY A N + E ++N P + +AVTWGV+PG+EIIQ T Sbjct: 516 VECFVNGKDLKDFITKWHDNPQVTYYAGNNKSEFLTNAPKDGASAVTWGVYPGREIIQST 575 Query: 306 VVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYI 145 ++ SF W E+F++W WA L+ + SR+LLE LV+++ +D++ Sbjct: 576 IIAEVSFKAWLSESFQVWGE-WANLYSKNTPSRKLLENCINDRWLVTVIHHDFM 628
>PROS_RABIT (P98118) Vitamin K-dependent protein S precursor (Fragment)| Length = 646 Score = 32.3 bits (72), Expect = 1.3 Identities = 14/43 (32%), Positives = 22/43 (51%) Frame = -2 Query: 249 RGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISGDLFAAF 121 RGW + +E+++Q QK +CLV++ Y G A F Sbjct: 422 RGWNLMKQGASGVKEIIQQKQKKHCLVTVEKGSYYPGSGIAQF 464
>YB1C_SCHPO (P87177) Hypothetical WD-repeat protein C3D6.12 in chromosome II| Length = 922 Score = 30.8 bits (68), Expect = 3.9 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -2 Query: 318 IQPTVVDSASFMVWKDEAFEIWSRGWACLFPEGDSSRELLEQVQKTYCLVSLVDNDYISG 139 + PT V S S D + +W +G +F E + REL EQ + T LVS +N G Sbjct: 668 VGPTFVVSGSH----DHSIRLWEQGDDLVFLEEERERELEEQYEST--LVSSYENAEADG 721 Query: 138 DL 133 ++ Sbjct: 722 EV 723
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.4 bits (67), Expect = 5.1 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Frame = -2 Query: 393 GESISNIPANA----VNAVTWGVFPG----KEIIQPTVVDSASFMVWKDEAFEIWSRG-W 241 G++I N+ N +N V+ V PG K+ I+ T S F V K E+ E + RG W Sbjct: 466 GQTIQNVQVNVSDNIINVVSGAVTPGGTKKKDDIKETQHRSERFKVVKIESTEPFKRGRW 525 Query: 240 ACL 232 C+ Sbjct: 526 MCM 528
>DXR_LEIXX (Q6AEY1) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 361 Score = 30.0 bits (66), Expect = 6.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +3 Query: 195 ALATPWMSHPPGTGRPIPWTRSQT 266 +L W PGTG P+ WTR+ T Sbjct: 247 SLGLGWPDRVPGTGLPLDWTRAHT 270
>CDD_SHISS (Q3Z062) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 294 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGW 523 S ++E P + L+ +N KG+ + Q AV AEK+++P + W Sbjct: 224 SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQW 273
>CDD_SHIFL (P0ABF7) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 294 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGW 523 S ++E P + L+ +N KG+ + Q AV AEK+++P + W Sbjct: 224 SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQW 273
>CDD_SHIDS (Q32EM3) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 294 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGW 523 S ++E P + L+ +N KG+ + Q AV AEK+++P + W Sbjct: 224 SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQW 273
>CDD_SHIBS (Q322V3) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 294 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGW 523 S ++E P + L+ +N KG+ + Q AV AEK+++P + W Sbjct: 224 SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQW 273
>CDD_ECOLI (P0ABF6) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 294 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGW 523 S ++E P + L+ +N KG+ + Q AV AEK+++P + W Sbjct: 224 SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQW 273
>CDD_ECOL6 (Q8FFV3) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 294 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGW 523 S ++E P + L+ +N KG+ + Q AV AEK+++P + W Sbjct: 224 SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQW 273
>CDD_ECO57 (Q8X648) Cytidine deaminase (EC 3.5.4.5) (Cytidine aminohydrolase)| (CDA) Length = 294 Score = 29.6 bits (65), Expect = 8.7 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = -2 Query: 672 SSPWSELDGLQPETTIIDDQLVKMNSKGFLTINSQPAVNAEKSESPSVGW 523 S ++E P + L+ +N KG+ + Q AV AEK+++P + W Sbjct: 224 SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQW 273 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,745,372 Number of Sequences: 219361 Number of extensions: 2164390 Number of successful extensions: 5653 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5407 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5637 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
